View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8996_low_2 (Length: 249)

Name: NF8996_low_2
Description: NF8996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8996_low_2
NF8996_low_2
[»] chr3 (9 HSPs)
chr3 (7-249)||(21554178-21554421)
chr3 (79-249)||(22970657-22970838)
chr3 (79-249)||(3041129-3041309)
chr3 (55-156)||(18013829-18013930)
chr3 (55-156)||(19348389-19348490)
chr3 (55-113)||(20767517-20767575)
chr3 (149-187)||(15806479-15806517)
chr3 (139-189)||(17796595-17796645)
chr3 (139-189)||(19105035-19105085)
[»] scaffold0526 (1 HSPs)
scaffold0526 (79-249)||(7779-7948)
[»] chr2 (7 HSPs)
chr2 (60-249)||(20034320-20034510)
chr2 (57-249)||(41001767-41001958)
chr2 (60-249)||(27524195-27524395)
chr2 (87-156)||(7301718-7301787)
chr2 (79-249)||(34577740-34577921)
chr2 (73-119)||(21869875-21869921)
chr2 (149-193)||(19257484-19257528)
[»] chr8 (5 HSPs)
chr8 (60-199)||(40542132-40542271)
chr8 (149-241)||(2040118-2040212)
chr8 (60-156)||(2040010-2040106)
chr8 (159-193)||(16751953-16751987)
chr8 (207-241)||(16752012-16752046)
[»] scaffold0079 (1 HSPs)
scaffold0079 (60-249)||(14955-15155)
[»] chr4 (6 HSPs)
chr4 (55-186)||(55475600-55475731)
chr4 (55-156)||(8409195-8409296)
chr4 (60-156)||(18327363-18327458)
chr4 (60-156)||(18437939-18438034)
chr4 (149-184)||(10394639-10394674)
chr4 (207-241)||(8409349-8409383)
[»] chr1 (6 HSPs)
chr1 (60-185)||(17197681-17197805)
chr1 (55-155)||(4547-4647)
chr1 (60-154)||(8772724-8772818)
chr1 (60-133)||(27502238-27502311)
chr1 (69-156)||(12003174-12003263)
chr1 (150-192)||(21243232-21243274)
[»] chr7 (6 HSPs)
chr7 (149-249)||(23618528-23618629)
chr7 (55-156)||(8303432-8303533)
chr7 (60-155)||(8254323-8254418)
chr7 (89-185)||(1981684-1981780)
chr7 (79-144)||(25842956-25843021)
chr7 (149-193)||(25842897-25842941)
[»] chr5 (6 HSPs)
chr5 (55-186)||(19377071-19377202)
chr5 (63-156)||(41427107-41427200)
chr5 (60-193)||(4289831-4289974)
chr5 (100-156)||(15052231-15052287)
chr5 (207-241)||(15052143-15052177)
chr5 (151-193)||(24648065-24648107)
[»] scaffold0017 (1 HSPs)
scaffold0017 (60-156)||(128973-129069)
[»] chr6 (4 HSPs)
chr6 (60-155)||(27890153-27890248)
chr6 (55-156)||(33583742-33583843)
chr6 (149-192)||(1178867-1178910)
chr6 (207-241)||(27890301-27890335)
[»] scaffold0027 (1 HSPs)
scaffold0027 (86-187)||(133235-133341)
[»] scaffold0182 (1 HSPs)
scaffold0182 (60-241)||(24212-24404)
[»] scaffold0061 (2 HSPs)
scaffold0061 (60-156)||(1920-2016)
scaffold0061 (60-156)||(7431-7527)
[»] scaffold0259 (1 HSPs)
scaffold0259 (147-190)||(18163-18206)


Alignment Details
Target: chr3 (Bit Score: 162; Significance: 1e-86; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 7 - 249
Target Start/End: Complemental strand, 21554421 - 21554178
Alignment:
Q  7 ttggtgttgattagtactttctacatattactattgttatnnnnnnntgcgatttaagtcccaaaattcagatttttgtgactttgcgtagcttcaacga 106  Q
    ||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  21554421 ttggtgttgattagtactttctacatattactattgttataaaaaaatgcgatttaagtcccaaaatttagatttttgcgactttgcgtagcttcaacga 21554322  T
Q  107 ctcaaatccatagcgaaattccaaaaataagcaaaatcttatcaaaatcgttaaatccattcaaaatcgcaggattttgaaggatttcgttca-nnnnnn 205  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||           
T  21554321 ctcaaatccatagcgaaattccaaaaacaagcaaaatcctatcaaaatcgttaaatccattcaaaatcgcaggattttgaagaatttcgttcattttttt 21554222  T
Q  206 nataagggttaatttttgacccggttcgtaaattgatccgattt 249  Q
     |||||||| |||||||||||| ||||||||||||||| |||||    
T  21554221 tataagggtcaatttttgacccagttcgtaaattgatctgattt 21554178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 79 - 249
Target Start/End: Original strand, 22970657 - 22970838
Alignment:
Q  79 tttttgtgactttgcgtagcttcaacgactcaaatccatagcgaaattccaaaaataagcaaaatcttatcaaaatcg----------ttaaatccattc 168  Q
    |||||| ||||||||||||||||||||| ||||||||||||| || | ||||||| | |||||||| |||||||||||          | ||||||||||    
T  22970657 tttttgcgactttgcgtagcttcaacgattcaaatccatagcaaagtcccaaaaacaggcaaaatcctatcaaaatcgcacaaaatcatgaaatccattc 22970756  T
Q  169 aaaatcgcaggattttgaaggatttcgttca-nnnnnnnataagggttaatttttgacccggttcgtaaattgatccgattt 249  Q
    ||||||||||||||||||||||||| | |||        |||||||| ||||||||||| |||||||||||||| |||||||    
T  22970757 aaaatcgcaggattttgaaggattttgctcatttttttgataagggtcaatttttgacctggttcgtaaattgacccgattt 22970838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 79 - 249
Target Start/End: Original strand, 3041129 - 3041309
Alignment:
Q  79 tttttgtgactttgcgtagcttcaacgactcaaatccatagcgaaattccaaaaataagcaaaatcttatcaaaatcg----------ttaaatccattc 168  Q
    |||||| ||||||| |||||||||| |||||||||||||||| || | ||||||| |   |||||| |||||||||||          | ||||||||||    
T  3041129 tttttgcgactttgtgtagcttcaatgactcaaatccatagcaaagtcccaaaaacagagaaaatcatatcaaaatcgcacaaaatcgtgaaatccattc 3041228  T
Q  169 aaaatcgcaggattttgaaggatttcgttcannnnnnnataagggttaatttttgacccggttcgtaaattgatccgattt 249  Q
    |||||||||||||||||| |||||| | |||       |||||||| ||||||||||  ||||||||||||||||||||||    
T  3041229 aaaatcgcaggattttgatggattttggtcatttttttataagggtcaatttttgactaggttcgtaaattgatccgattt 3041309  T

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Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 55 - 156
Target Start/End: Original strand, 18013829 - 18013930
Alignment:
Q  55 gcgatttaagtcccaaaattcagatttttgtgactttgcgtagcttcaacgactcaaatccatagcgaaattccaaaaataagcaaaatcttatcaaaat 154  Q
    |||| ||||| |||||||| | | |||||| ||||||||||||||||||| ||||||||||||||| || | ||||||||| ||||||||  ||||||||    
T  18013829 gcgacttaaggcccaaaatcctggtttttgcgactttgcgtagcttcaactactcaaatccatagcaaagtcccaaaaataggcaaaatccaatcaaaat 18013928  T
Q  155 cg 156  Q
    ||    
T  18013929 cg 18013930  T

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Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 55 - 156
Target Start/End: Original strand, 19348389 - 19348490
Alignment:
Q  55 gcgatttaagtcccaaaattcagatttttgtgactttgcgtagcttcaacgactcaaatccatagcgaaattccaaaaataagcaaaatcttatcaaaat 154  Q
    |||| |||||||||||||| | | |||||| || |||| ||||||||||||||||||||||||||| || |   ||||||| ||||||||  ||||||||    
T  19348389 gcgacttaagtcccaaaatcctggtttttgcgattttgtgtagcttcaacgactcaaatccatagcaaagtcttaaaaataggcaaaatccaatcaaaat 19348488  T
Q  155 cg 156  Q
    ||    
T  19348489 cg 19348490  T

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Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 55 - 113
Target Start/End: Complemental strand, 20767575 - 20767517
Alignment:
Q  55 gcgatttaagtcccaaaattcagatttttgtgactttgcgtagcttcaacgactcaaat 113  Q
    |||| |||||||||||||||||| ||||||  |||||||||||||||||| ||||||||    
T  20767575 gcgacttaagtcccaaaattcaggtttttgcaactttgcgtagcttcaacaactcaaat 20767517  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 187
Target Start/End: Complemental strand, 15806517 - 15806479
Alignment:
Q  149 caaaatcgttaaatccattcaaaatcgcaggattttgaa 187  Q
    ||||||||| |||||||| ||||||||||||||||||||    
T  15806517 caaaatcgtgaaatccatacaaaatcgcaggattttgaa 15806479  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 189
Target Start/End: Original strand, 17796595 - 17796645
Alignment:
Q  139 aaaatcttatcaaaatcgttaaatccattcaaaatcgcaggattttgaagg 189  Q
    |||||| |||||||||||| |||||||| |||||| |||||||||| ||||    
T  17796595 aaaatcgtatcaaaatcgtgaaatccatacaaaattgcaggattttaaagg 17796645  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 189
Target Start/End: Original strand, 19105035 - 19105085
Alignment:
Q  139 aaaatcttatcaaaatcgttaaatccattcaaaatcgcaggattttgaagg 189  Q
    |||||| |||||||||||| |||||||| |||||| |||||||||| ||||    
T  19105035 aaaatcgtatcaaaatcgtgaaatccatacaaaattgcaggattttaaagg 19105085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0526 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: scaffold0526
Description:

Target: scaffold0526; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 79 - 249
Target Start/End: Original strand, 7779 - 7948
Alignment:
Q  79 tttttgtgactttgcgtagcttcaacgactcaaatccatagcgaaattccaaaaataagcaaaatcttatcaaaatcgttaaatccattcaaaatcgcag 178  Q
    |||||| ||||||| ||||||||||||||||||||||||||| || | ||||||| | |||||||| |||||||||||| |||||| |||||||||||||    
T  7779 tttttgcgactttgtgtagcttcaacgactcaaatccatagcaaagtcccaaaaacaggcaaaatcctatcaaaatcgtgaaatccgttcaaaatcgcag 7878  T
Q  179 gattttgaaggatttcgttcannnnnnnataagggttaatttttgacccggttcgtaaattgatccgattt 249  Q
    |||||||| |||||| |||||       |||| ||| ||||||| |||||||||||||||||| |||||||    
T  7879 gattttgatggattttgttcattttttgataa-ggtcaattttttacccggttcgtaaattgacccgattt 7948  T

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Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 60 - 249
Target Start/End: Complemental strand, 20034510 - 20034320
Alignment:
Q  60 ttaagtcccaaaattcagatttttgtgactttgcgtagcttcaacgactcaaatccatagcgaaattccaaaaataagcaaaatcttatcaaaatcgtta 159  Q
    ||||||| |||||| | | |||||| ||||||||||||||||||||||||||||||||| | || | ||||||| | |||||||| |||||||||||| |    
T  20034510 ttaagtctcaaaatcctggtttttgcgactttgcgtagcttcaacgactcaaatccatatcaaagtcccaaaaacaggcaaaatcctatcaaaatcgtga 20034411  T
Q  160 aatccattcaaaatcgcaggattttgaaggatttcgttca-nnnnnnnataagggttaatttttgacccggttcgtaaattgatccgattt 249  Q
    |||||||||||||||||||||||| || |||||| |||||         ||||||| ||||||||||||||||| |||||| | |||||||    
T  20034410 aatccattcaaaatcgcaggatttggatggattttgttcatttttttgttaagggtcaatttttgacccggttcataaatttacccgattt 20034320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 57 - 249
Target Start/End: Original strand, 41001767 - 41001958
Alignment:
Q  57 gatttaagtcccaaaattcagatttttgtgactttgcgtagcttcaacgactcaaatccatagcgaaattccaaaaataagcaaaatcttatcaaaatcg 156  Q
    |||||||||| |||||| | | ||||||  |||||||||||||||||||||||||||||||||| || | ||||||| | ||||||||  | ||| ||||    
T  41001767 gatttaagtctcaaaatcctggtttttgcaactttgcgtagcttcaacgactcaaatccatagcaaagtcccaaaaacaggcaaaatcaca-caatatcg 41001865  T
Q  157 ttaaatccattcaaaatcgcaggattttgaaggatttcgttcannnnnnnataagggttaatttttgacccggttcgtaaattgatccgattt 249  Q
    | |||||| ||||||||| ||||||||||| |||||| |||||       |||||||| ||||||||| | |||||||||||||| |||||||    
T  41001866 tgaaatccgttcaaaatcacaggattttgagggattttgttcattttttgataagggtcaatttttgaacgggttcgtaaattgacccgattt 41001958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 60 - 249
Target Start/End: Complemental strand, 27524395 - 27524195
Alignment:
Q  60 ttaagtcccaaaattcagatttttgtgactttgcgtagcttcaacgactcaaatccatagcgaaattccaaaaataagcaaaatcttat----------c 149  Q
    ||||||| |||||||| | |||||| |||||||||||||||| |||||||||||| ||||| || | ||||||||| |||||||| |||          |    
T  27524395 ttaagtctcaaaattctggtttttgcgactttgcgtagcttcgacgactcaaatctatagcaaagtcccaaaaataggcaaaatcctatcaaaattgcac 27524296  T
Q  150 aaaatcgttaaatccattcaaaatcgcaggattttgaaggatttcgttca-nnnnnnnataagggttaatttttgacccggttcgtaaattgatccgatt 248  Q
    |||||||| ||||| |||||||||||||||||| ||| |||||| |||||         ||||||| ||||||||| |||||||||||||||| ||||||    
T  27524295 aaaatcgtgaaatctattcaaaatcgcaggattgtgatggattttgttcatttttttgttaagggtcaatttttgagccggttcgtaaattgacccgatt 27524196  T
Q  249 t 249  Q
    |    
T  27524195 t 27524195  T

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Target: chr2; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 87 - 156
Target Start/End: Original strand, 7301718 - 7301787
Alignment:
Q  87 actttgcgtagcttcaacgactcaaatccatagcgaaattccaaaaataagcaaaatcttatcaaaatcg 156  Q
    ||||||||||||||||| ||||||||| |||||| || ||||||||||| |||||||| |||||||||||    
T  7301718 actttgcgtagcttcaatgactcaaattcatagcaaagttccaaaaataggcaaaatcctatcaaaatcg 7301787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 79 - 249
Target Start/End: Original strand, 34577740 - 34577921
Alignment:
Q  79 tttttgtgactttgcgtagcttcaacgactcaaatccatagcgaaattccaaaaataagcaaaatcttatcaaaatcg----------ttaaatccattc 168  Q
    |||||| ||||||| ||||| ||||||||||||||||||||| || || |||||| | |||||||| |||||||||||          |  ||| |||||    
T  34577740 tttttgcgactttgtgtagcatcaacgactcaaatccatagcaaagtttcaaaaacaggcaaaatcctatcaaaatcgcacaaaatcgtggaattcattc 34577839  T
Q  169 aaaatcgcaggattttgaaggatttcgttca-nnnnnnnataagggttaatttttgacccggttcgtaaattgatccgattt 249  Q
    |||||||||||||||||| |||||| |||||        ||| |||| ||||||||||  |||||||||||||| |||||||    
T  34577840 aaaatcgcaggattttgatggattttgttcattttttttatatgggtcaatttttgacatggttcgtaaattgacccgattt 34577921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 119
Target Start/End: Complemental strand, 21869921 - 21869875
Alignment:
Q  73 ttcagatttttgtgactttgcgtagcttcaacgactcaaatccatag 119  Q
    ||||| |||| | ||||||||||||||||||||| ||||||||||||    
T  21869921 ttcaggttttggcgactttgcgtagcttcaacgattcaaatccatag 21869875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 193
Target Start/End: Complemental strand, 19257528 - 19257484
Alignment:
Q  149 caaaatcgttaaatccattcaaaatcgcaggattttgaaggattt 193  Q
    |||||| || |||||||||||||||||||||||||| ||| ||||    
T  19257528 caaaattgtgaaatccattcaaaatcgcaggattttaaagaattt 19257484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 60 - 199
Target Start/End: Complemental strand, 40542271 - 40542132
Alignment:
Q  60 ttaagtcccaaaattcagatttttgtgactttgcgtagcttcaacgactcaaatccatagcgaaattccaaaaataagcaaaatcttatcaaaatcgtta 159  Q
    |||||||||||||||  | |||||| ||||||| |||||||||||||||||||||||| || || | ||||||| | |||||||  |||||||||||| |    
T  40542271 ttaagtcccaaaattttggtttttgcgactttgtgtagcttcaacgactcaaatccatggcaaagtcccaaaaacaggcaaaattctatcaaaatcgtga 40542172  T
Q  160 aatccattcaaaatcgcaggattttgaaggatttcgttca 199  Q
    ||||  ||||||||||||||||||||| |||||| |||||    
T  40542171 aatcagttcaaaatcgcaggattttgatggattttgttca 40542132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 149 - 241
Target Start/End: Original strand, 2040118 - 2040212
Alignment:
Q  149 caaaatcgttaaatccattcaaaatcgcaggattttgaaggatttcgttca--nnnnnnnataagggttaatttttgacccggttcgtaaattga 241  Q
    ||||||||| |||||||||||||| |||||||||||||||||||| |||||         |||||||| ||||||| ||||||||||||||||||    
T  2040118 caaaatcgtgaaatccattcaaaaccgcaggattttgaaggattttgttcatttttttttataagggtcaatttttcacccggttcgtaaattga 2040212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 60 - 156
Target Start/End: Original strand, 2040010 - 2040106
Alignment:
Q  60 ttaagtcccaaaattcagatttttgtgactttgcgtagcttcaacgactcaaatccatagcgaaattccaaaaataagcaaaatcttatcaaaatcg 156  Q
    ||||||| |||||| | |||||| | ||| ||| ||||||||||||||||||||||||||| || | ||||||| |  |||| || |||||||||||    
T  2040010 ttaagtctcaaaatcctgattttggcgacattgtgtagcttcaacgactcaaatccatagcaaagtcccaaaaacagacaaattcctatcaaaatcg 2040106  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 193
Target Start/End: Original strand, 16751953 - 16751987
Alignment:
Q  159 aaatccattcaaaatcgcaggattttgaaggattt 193  Q
    |||||||||||||||||||||||||||| ||||||    
T  16751953 aaatccattcaaaatcgcaggattttgatggattt 16751987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 241
Target Start/End: Original strand, 16752012 - 16752046
Alignment:
Q  207 ataagggttaatttttgacccggttcgtaaattga 241  Q
    |||||||| ||||||||||||||||||||||||||    
T  16752012 ataagggtcaatttttgacccggttcgtaaattga 16752046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 60 - 249
Target Start/End: Complemental strand, 15155 - 14955
Alignment:
Q  60 ttaagtcccaaaattcagatttttgtgactttgcgtagcttcaacgactcaaatccatagcgaaattccaaaaataagcaaaatcttatcaaa------- 152  Q
    ||||||| |||||||| | |||||||||||||| ||||||||||||||||||||||||||| || |  |||||| | |||||||| |||||||           
T  15155 ttaagtctcaaaattctggtttttgtgactttgtgtagcttcaacgactcaaatccatagcaaagtctcaaaaacaggcaaaatcctatcaaaatcgcac 15056  T
Q  153 ---atcgttaaatccattcaaaatcgcaggattttgaaggatttcgttca-nnnnnnnataagggttaatttttgacccggttcgtaaattgatccgatt 248  Q
       ||||| ||||||||||||||||||||||||||||| ||||| |||||        |||||||| |||||||| |||||||||||||| || ||||||    
T  15055 aaaatcgtaaaatccattcaaaatcgcaggattttgaatgattttgttcatttttttgataagggtcaatttttgtcccggttcgtaaatagacccgatt 14956  T
Q  249 t 249  Q
    |    
T  14955 t 14955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 55 - 186
Target Start/End: Original strand, 55475600 - 55475731
Alignment:
Q  55 gcgatttaagtcccaaaattcagatttttgtgactttgcgtagcttcaacgactcaaatccatagcgaaattccaaaaataagcaaaatcttatcaaaat 154  Q
    |||| |||||| | ||||| | |||||||| |||||||||||  || ||||||| ||||||||||| || ||||||||| | |||||||| |||||||||    
T  55475600 gcgacttaagttctaaaatcctgatttttgcgactttgcgtaattttaacgacttaaatccatagcaaagttccaaaaacaggcaaaatcctatcaaaat 55475699  T
Q  155 cgttaaatccattcaaaatcgcaggattttga 186  Q
    ||| |||||| |||||||||||||||||||||    
T  55475700 cgtgaaatccgttcaaaatcgcaggattttga 55475731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 55 - 156
Target Start/End: Original strand, 8409195 - 8409296
Alignment:
Q  55 gcgatttaagtcccaaaattcagatttttgtgactttgcgtagcttcaacgactcaaatccatagcgaaattccaaaaataag-caaaatcttatcaaaa 153  Q
    |||| |||||| ||||||| ||| ||||||  ||||||||||||||||| |||||||||||||||  ||| ||| ||||| || ||||||| ||||||||    
T  8409195 gcgacttaagtaccaaaatccaggtttttgcaactttgcgtagcttcaaagactcaaatccatag-taaagtcccaaaatcagacaaaatcctatcaaaa 8409293  T
Q  154 tcg 156  Q
    |||    
T  8409294 tcg 8409296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 156
Target Start/End: Original strand, 18327363 - 18327458
Alignment:
Q  60 ttaagtcccaaaattcagatttttgtgactttgcgtagcttcaacgactcaaatccatagcgaaattccaaaaataagcaaaatcttatcaaaatcg 156  Q
    ||||||| ||||||| ||  ||||| |||||| | |||||||||||||||||| | ||| | ||||||||||||  ||||||||  |||||||||||    
T  18327363 ttaagtctcaaaatttaggattttgcgactttacttagcttcaacgactcaaaactataac-aaattccaaaaaccagcaaaatactatcaaaatcg 18327458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 156
Target Start/End: Complemental strand, 18438034 - 18437939
Alignment:
Q  60 ttaagtcccaaaattcagatttttgtgactttgcgtagcttcaacgactcaaatccatagcgaaattccaaaaataagcaaaatcttatcaaaatcg 156  Q
    ||||||| ||||||| ||  ||||| |||||| | |||||||||||||||||| | ||| | ||||||||||||  ||||||||  |||||||||||    
T  18438034 ttaagtctcaaaatttaggattttgcgactttacttagcttcaacgactcaaaactataac-aaattccaaaaaccagcaaaatactatcaaaatcg 18437939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 184
Target Start/End: Original strand, 10394639 - 10394674
Alignment:
Q  149 caaaatcgttaaatccattcaaaatcgcaggatttt 184  Q
    ||||||| ||||||||||||||||||||||||||||    
T  10394639 caaaatcattaaatccattcaaaatcgcaggatttt 10394674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 241
Target Start/End: Original strand, 8409349 - 8409383
Alignment:
Q  207 ataagggttaatttttgacccggttcgtaaattga 241  Q
    |||||||| ||||||||||||||||||||||||||    
T  8409349 ataagggtcaatttttgacccggttcgtaaattga 8409383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 7e-27; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 60 - 185
Target Start/End: Complemental strand, 17197805 - 17197681
Alignment:
Q  60 ttaagtcccaaaattcagatttttgtgactttgcgtagcttcaacgactcaaatccatagcgaaattccaaaaataagcaaaatcttatcaaaatcgtta 159  Q
    ||||||| |||||| | | ||| || ||||||||||| ||||||||||||||||||||||| || | ||||||| | |||||||| |||||||||||| |    
T  17197805 ttaagtctcaaaatcctggtttatgcgactttgcgta-cttcaacgactcaaatccatagcaaagtcccaaaaacaggcaaaatcctatcaaaatcgtga 17197707  T
Q  160 aatccattcaaaatcgcaggattttg 185  Q
    |||||||||||||| |||||||||||    
T  17197706 aatccattcaaaattgcaggattttg 17197681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 55 - 155
Target Start/End: Original strand, 4547 - 4647
Alignment:
Q  55 gcgatttaagtcccaaaattcagatttttgtgactttgcgtagcttcaacgactcaaatccatagcgaaattccaaaaataagcaaaatcttatcaaaat 154  Q
    |||| ||||||| |||||||  | |||||| |||||||||||||||||||||||||||| |||||  || ||  ||||||| |||||||| ||| |||||    
T  4547 gcgacttaagtctcaaaattttggtttttgcgactttgcgtagcttcaacgactcaaattcatagtaaagttttaaaaataggcaaaatcctattaaaat 4646  T
Q  155 c 155  Q
    |    
T  4647 c 4647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 60 - 154
Target Start/End: Original strand, 8772724 - 8772818
Alignment:
Q  60 ttaagtcccaaaattcagatttttgtgactttgcgtagcttcaacgactcaaatccatagcgaaattccaaaaataagcaaaatcttatcaaaat 154  Q
    |||| ||||||||| |||| ||||| ||||||| ||||||||||| |||||||||||||||  | | ||||||| |  ||||||| |||||||||    
T  8772724 ttaaatcccaaaatccagaattttgcgactttgtgtagcttcaacaactcaaatccatagcagagtcccaaaaaaagacaaaatcctatcaaaat 8772818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 133
Target Start/End: Complemental strand, 27502311 - 27502238
Alignment:
Q  60 ttaagtcccaaaattcagatttttgtgactttgcgtagcttcaacgactcaaatccatagcgaaattccaaaaa 133  Q
    |||||| ||||||| ||||||||||| ||||||  || |||||||||||||||||||||||  ||| |||||||    
T  27502311 ttaagttccaaaatccagatttttgtaactttgtttaacttcaacgactcaaatccatagcagaatcccaaaaa 27502238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 156
Target Start/End: Complemental strand, 12003263 - 12003174
Alignment:
Q  69 aaaattcagatttttgtgactttgcgtag---cttcaacgactcaaatccatagcgaaattccaaaaataagcaaaatcttatcaaaatcg 156  Q
    ||||||||| |||||||||||||| ||||   ||||||||| |||||| |||||| ||| ||| |||| | |||||||| |||||||||||    
T  12003263 aaaattcaggtttttgtgactttgtgtagtagcttcaacgattcaaattcatagc-aaaatcccaaaacaggcaaaatcctatcaaaatcg 12003174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 192
Target Start/End: Complemental strand, 21243274 - 21243232
Alignment:
Q  150 aaaatcgttaaatccattcaaaatcgcaggattttgaaggatt 192  Q
    |||||||  |||| |||||||||||||||||||||||||||||    
T  21243274 aaaatcgcaaaattcattcaaaatcgcaggattttgaaggatt 21243232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 7e-24; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 149 - 249
Target Start/End: Complemental strand, 23618629 - 23618528
Alignment:
Q  149 caaaatcgttaaatccattcaaaatcgcaggattttgaaggatttcgttcannnnnnn-ataagggttaatttttgacccggttcgtaaattgatccgat 247  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||| |||||        |||||||| ||||||||||||||||||||||||||||||||    
T  23618629 caaaatcgtgaaatccattcaaaatcgtaggattttgaaggattttgttcatttttttgataagggtcaatttttgacccggttcgtaaattgatccgat 23618530  T
Q  248 tt 249  Q
    ||    
T  23618529 tt 23618528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 55 - 156
Target Start/End: Original strand, 8303432 - 8303533
Alignment:
Q  55 gcgatttaagtcccaaaattcagatttttgtgactttgcgtagcttcaacgactcaaatccatagcgaaattccaaaaataagcaaaatcttatcaaaat 154  Q
    |||| ||||||| |||||||||| |||||| |||||||||||||||||||||||||||| |||| |  |||  |||||| | |||||||| |||||||||    
T  8303432 gcgacttaagtctcaaaattcaggtttttgcgactttgcgtagcttcaacgactcaaattcataacagaatctcaaaaacaggcaaaatcctatcaaaat 8303531  T
Q  155 cg 156  Q
    ||    
T  8303532 cg 8303533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 60 - 155
Target Start/End: Complemental strand, 8254418 - 8254323
Alignment:
Q  60 ttaagtcccaaaattcagatttttgtgactttgcgtagcttcaacgactcaaatccatagcgaaattccaaaaataagcaaaatcttatcaaaatc 155  Q
    ||||||| |||||| | | |||||| |||||||||||||||||||||||||||| |||||| || |  |||||| |||||||||| ||||||||||    
T  8254418 ttaagtctcaaaatcctggtttttgcgactttgcgtagcttcaacgactcaaattcatagcaaagtctcaaaaacaagcaaaatcctatcaaaatc 8254323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 89 - 185
Target Start/End: Complemental strand, 1981780 - 1981684
Alignment:
Q  89 tttgcgtagcttcaacgactcaaatccatagcgaaattccaaaaataagcaaaatcttatcaaaatcgttaaatccattcaaaatcgcaggattttg 185  Q
    |||| |||| ||||||||||||||| |||||| || |   || || | |||||||| |||||||||||| |||||||||||||||||||||||||||    
T  1981780 tttgtgtagtttcaacgactcaaattcatagcaaagtcttaataagaggcaaaatcctatcaaaatcgtgaaatccattcaaaatcgcaggattttg 1981684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 79 - 144
Target Start/End: Complemental strand, 25843021 - 25842956
Alignment:
Q  79 tttttgtgactttgcgtagcttcaacgactcaaatccatagcgaaattccaaaaataagcaaaatc 144  Q
    |||||| ||||||| ||||||||||||||||||||||||||| || | ||||||| | ||||||||    
T  25843021 tttttgcgactttgtgtagcttcaacgactcaaatccatagcaaagtcccaaaaacaggcaaaatc 25842956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 193
Target Start/End: Complemental strand, 25842941 - 25842897
Alignment:
Q  149 caaaatcgttaaatccattcaaaatcgcaggattttgaaggattt 193  Q
    ||||||||| |||| |||||||||||||| |||||||| ||||||    
T  25842941 caaaatcgtgaaattcattcaaaatcgcaagattttgatggattt 25842897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 55 - 186
Target Start/End: Original strand, 19377071 - 19377202
Alignment:
Q  55 gcgatttaagtcccaaaattcagatttttgtgactttgcgtagcttcaacgactcaaatccatagcgaaattccaaaaataagcaaaatcttatcaaaat 154  Q
    ||||||||||||| ||||||  | |||||| ||||||| ||||||||||||||||||||| |||||  |||  |||||| ||| |||||||||| |||||    
T  19377071 gcgatttaagtcctaaaattttggtttttgcgactttgtgtagcttcaacgactcaaatctatagcagaatctcaaaaacaagtaaaatcttataaaaat 19377170  T
Q  155 cgttaaatccattcaaaatcgcaggattttga 186  Q
    ||| |||||| || |||||| |||| ||||||    
T  19377171 cgtgaaatccgtttaaaatcacaggtttttga 19377202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 63 - 156
Target Start/End: Original strand, 41427107 - 41427200
Alignment:
Q  63 agtcccaaaattcagatttttgtgactttgcgtagcttcaacgactcaaatccatagcgaaattccaaaaataagcaaaatcttatcaaaatcg 156  Q
    ||||||||||| ||| ||||||  ||||||||||||||||||||||||||||||||||  ||| ||| ||| | |||||||| |||||||||||    
T  41427107 agtcccaaaatccaggtttttgcaactttgcgtagcttcaacgactcaaatccatagcagaatcccataaacaggcaaaatcctatcaaaatcg 41427200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 193
Target Start/End: Original strand, 4289831 - 4289974
Alignment:
Q  60 ttaagtcccaaaattcagatttttgtgactttgcgtagcttcaacgactcaaatccatagcgaaattccaaaaataagcaaaatcttatcaaaatcg--- 156  Q
    |||||||||||||  |||||||||| ||||||||||||||||||| ||| |||||| |||| || | ||||||| |  |||| || |||||||||||       
T  4289831 ttaagtcccaaaacccagatttttgcgactttgcgtagcttcaacaacttaaatccctagcaaagtcccaaaaacagacaaactcctatcaaaatcgcac 4289930  T
Q  157 -------ttaaatccattcaaaatcgcaggattttgaaggattt 193  Q
           | |||||| ||||||||||||||||||||| ||||||    
T  4289931 aaaatcgtgaaatccgttcaaaatcgcaggattttgatggattt 4289974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 100 - 156
Target Start/End: Complemental strand, 15052287 - 15052231
Alignment:
Q  100 tcaacgactcaaatccatagcgaaattccaaaaataagcaaaatcttatcaaaatcg 156  Q
    ||||||||||||||||||||| || | ||||||| |||||||||| |||||||||||    
T  15052287 tcaacgactcaaatccatagcaaagtcccaaaaacaagcaaaatcctatcaaaatcg 15052231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 241
Target Start/End: Complemental strand, 15052177 - 15052143
Alignment:
Q  207 ataagggttaatttttgacccggttcgtaaattga 241  Q
    |||||||| ||||||||||||||||||||||||||    
T  15052177 ataagggtcaatttttgacccggttcgtaaattga 15052143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 193
Target Start/End: Original strand, 24648065 - 24648107
Alignment:
Q  151 aaatcgttaaatccattcaaaatcgcaggattttgaaggattt 193  Q
    ||||||| |||||||| |||||||||| |||||||||||||||    
T  24648065 aaatcgtgaaatccatacaaaatcgcaagattttgaaggattt 24648107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 60 - 156
Target Start/End: Complemental strand, 129069 - 128973
Alignment:
Q  60 ttaagtcccaaaattcagatttttgtgactttgcgtagcttcaacgactcaaatccatagcgaaattccaaaaataagcaaaatcttatcaaaatcg 156  Q
    |||||||||||||| ||| | |||| || ||||||||||||||||||||||||||||||||  |||  ||||||||| ||||||| |||||||||||    
T  129069 ttaagtcccaaaatccaggtgtttgcgagtttgcgtagcttcaacgactcaaatccatagcagaatctcaaaaataaacaaaatcatatcaaaatcg 128973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 60 - 155
Target Start/End: Original strand, 27890153 - 27890248
Alignment:
Q  60 ttaagtcccaaaattcagatttttgtgactttgcgtagcttcaacgactcaaatccatagcgaaattccaaaaataagcaaaatcttatcaaaatc 155  Q
    |||||||||||||||||| |||||| ||||||| ||||||| ||||||||||||||||| |  ||| ||||||| |  ||||||| ||||||||||    
T  27890153 ttaagtcccaaaattcaggtttttgcgactttgtgtagctttaacgactcaaatccatatcagaatcccaaaaacagacaaaatcctatcaaaatc 27890248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 55 - 156
Target Start/End: Complemental strand, 33583843 - 33583742
Alignment:
Q  55 gcgatttaagtcccaaaattcagatttttgtgactttgcgtagcttcaacgactcaaatccatagcgaaattccaaaaataagcaaaatcttatcaaaat 154  Q
    |||| |||||||||||||| |||  ||||  ||||||   ||||||||||||||||||||||||||  ||  ||||||| |||||| ||| |||||||||    
T  33583843 gcgacttaagtcccaaaatccaggatttttagactttaattagcttcaacgactcaaatccatagcagaaacccaaaaacaagcaatatcctatcaaaat 33583744  T
Q  155 cg 156  Q
    ||    
T  33583743 cg 33583742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 192
Target Start/End: Original strand, 1178867 - 1178910
Alignment:
Q  149 caaaatcgttaaatccattcaaaatcgcaggattttgaaggatt 192  Q
    ||||||||| |||||||| | |||||||||||||||||||||||    
T  1178867 caaaatcgtgaaatccatgcgaaatcgcaggattttgaaggatt 1178910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 241
Target Start/End: Original strand, 27890301 - 27890335
Alignment:
Q  207 ataagggttaatttttgacccggttcgtaaattga 241  Q
    |||||||| ||||||||||||||||||||||||||    
T  27890301 ataagggtcaatttttgacccggttcgtaaattga 27890335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 86 - 187
Target Start/End: Complemental strand, 133341 - 133235
Alignment:
Q  86 gactttgcgtagcttcaacgactcaaatc-----catagcgaaattccaaaaataagcaaaatcttatcaaaatcgttaaatccattcaaaatcgcagga 180  Q
    |||||||||||||||||||||||||||||     || | | || |  |||||| | |||||||| |||||||||||| ||||||||||||||||||||||    
T  133341 gactttgcgtagcttcaacgactcaaatcaaatccacatcaaagtctcaaaaacaggcaaaatcctatcaaaatcgtgaaatccattcaaaatcgcagga 133242  T
Q  181 ttttgaa 187  Q
    |||||||    
T  133241 ttttgaa 133235  T

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Target: scaffold0182 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 60 - 241
Target Start/End: Original strand, 24212 - 24404
Alignment:
Q  60 ttaagtcccaaaattcagatttttgtgactttgcgtagcttcaacgactcaaatccatagcgaaattccaaaaataagcaaaatcttat----------c 149  Q
    ||||||| |||||| | | || ||| ||||||||||| |||||| |||||||||||||||| || | ||||||| || ||||||| |||          |    
T  24212 ttaagtctcaaaatcctggttcttgcgactttgcgtaacttcaatgactcaaatccatagcaaagtcccaaaaacaaacaaaatcctatcaaaatcgcac 24311  T
Q  150 aaaatcgttaaatccattcaaaatcgcaggattttgaaggatttcgttc-annnnnnnataagggttaatttttgacccggttcgtaaattga 241  Q
    |||||||| |||||||||||||||| ||||||||| | |||||| |||| |       |||||||||||||||| ||||||||| ||||||||    
T  24312 aaaatcgtgaaatccattcaaaatcacaggattttaatggattttgttcaatttttttataagggttaattttttacccggttcataaattga 24404  T

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Target: scaffold0061 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 60 - 156
Target Start/End: Complemental strand, 2016 - 1920
Alignment:
Q  60 ttaagtcccaaaattcagatttttgtgactttgcgtagcttcaacgactcaaatccatagcgaaattccaaaaataagcaaaatcttatcaaaatcg 156  Q
    |||||||||||||| ||| | |||| ||||||||||||||| |||||||||||||||||||  |||  ||||||||  ||||||| ||||| |||||    
T  2016 ttaagtcccaaaatccaggtgtttgcgactttgcgtagctttaacgactcaaatccatagcagaatctcaaaaatagacaaaatcatatcacaatcg 1920  T

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Target: scaffold0061; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 60 - 156
Target Start/End: Complemental strand, 7527 - 7431
Alignment:
Q  60 ttaagtcccaaaattcagatttttgtgactttgcgtagcttcaacgactcaaatccatagcgaaattccaaaaataagcaaaatcttatcaaaatcg 156  Q
    |||||||||||||| ||| | |||| ||||||||||||||| |||||||||||||||||||  |||  ||||||||  ||||||| ||||| |||||    
T  7527 ttaagtcccaaaatccaggtgtttgcgactttgcgtagctttaacgactcaaatccatagcagaatctcaaaaatagacaaaatcatatcacaatcg 7431  T

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Target: scaffold0259 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 190
Target Start/End: Original strand, 18163 - 18206
Alignment:
Q  147 atcaaaatcgttaaatccattcaaaatcgcaggattttgaagga 190  Q
    ||||||||||| |||||||| |||||||||| ||||||||||||    
T  18163 atcaaaatcgtgaaatccatgcaaaatcgcaagattttgaagga 18206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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