View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8996_low_3 (Length: 238)
Name: NF8996_low_3
Description: NF8996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8996_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 19 - 228
Target Start/End: Original strand, 14783363 - 14783572
Alignment:
| Q |
19 |
taaaccccatttcctacagtcacatgatttttggcctaaattcacaatatatgtgtcagttccatttgtcacactaaaaatggcataatcatcatcaaaa |
118 |
Q |
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| T |
14783363 |
taaaccccatttcctacagtcacatgatttttggcctaaattcacaatatatgtgtcagttccatttgtcacactaaaaatggcataatcatcatcaaaa |
14783462 |
T |
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| Q |
119 |
tgccaagttggttcccatccatcagctaccctctttactttttcaagttgtagttggattataggacatatattccctctatatctttgcatgagatcct |
218 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14783463 |
tgccaagttggttcccatccatcaactaccctctttactttttcaagttgtagttggattataggacatatattccctctatatctttgcatgagatcct |
14783562 |
T |
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| Q |
219 |
tctgtgctcc |
228 |
Q |
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|||| ||||| |
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| T |
14783563 |
tctgggctcc |
14783572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 19 - 222
Target Start/End: Complemental strand, 33574080 - 33573877
Alignment:
| Q |
19 |
taaaccccatttcctacagtcacatgatttttggcctaaattcacaatatatgtgtcagttccatttgtcacactaaaaatggcataatcatcatcaaaa |
118 |
Q |
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||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||| |
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| T |
33574080 |
taaaccccatttcctacggtcacatgatttttgggctaaattcacaatatatgtgtcagttccatttgtcacgctaaatatggcatactcatcatcaaaa |
33573981 |
T |
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| Q |
119 |
tgccaagttggttcccatccatcagctaccctctttactttttcaagttgtagttggattataggacatatattccctctatatctttgcatgagatcct |
218 |
Q |
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|||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33573980 |
tgccaagttggttcccatccatcaactaccttctttgctttttcaagttgtagttggattataggacatatattccctctatatctttgcatgagatcct |
33573881 |
T |
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| Q |
219 |
tctg |
222 |
Q |
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|||| |
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| T |
33573880 |
tctg |
33573877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 171 - 221
Target Start/End: Original strand, 44920761 - 44920811
Alignment:
| Q |
171 |
gttggattataggacatatattccctctatatctttgcatgagatccttct |
221 |
Q |
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||||||||||||| ||||| | |||||||||||||||||||||| |||||| |
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| T |
44920761 |
gttggattatagggcatatgtcccctctatatctttgcatgagacccttct |
44920811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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