View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8997_high_1 (Length: 705)
Name: NF8997_high_1
Description: NF8997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8997_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 680; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 680; E-Value: 0
Query Start/End: Original strand, 1 - 688
Target Start/End: Complemental strand, 37558345 - 37557658
Alignment:
| Q |
1 |
cggcttcactggttttgttgcttcaagaagaatctccaatggaatctttggttttgacctttccataggaaccgtgtaatgatagtatttctctgggtct |
100 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37558345 |
cggcttcactggttttgttgcttcaagaagaacctccaatggaatctttggttttgacctttccataggaaccgtgtaatgatagtatttctctgggtct |
37558246 |
T |
|
| Q |
101 |
ggacaaagatcctgcagaatttcacctttgattagttcgcttcaaacaccgacaaatatgaaaatatcaacgtcttttaatttacaatacctgattagca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37558245 |
ggacaaagatcctgcagaatttcacctttgattagttcgcttcaaacaccgacaaatatgaaaatatcaacgtcttttaatttacaatacctgattagca |
37558146 |
T |
|
| Q |
201 |
tgcatctttttcacaaagattttgaatatatcaaaattttgtttctggaataattcttctgtcaaacgtaggtatgtgactccatacatccttagttttg |
300 |
Q |
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| T |
37558145 |
tgcatctttttcacaaagattttgaatatatcaaaattttgtttctggaataattcttctgtcaaacgtaggtatgtgactccatacatccttagttttg |
37558046 |
T |
|
| Q |
301 |
gagggccctttttgttaacaccatttggccttgcatttagaaggatttggttgtaaccttcactgtcataccttggaagtgcattttccccagcaacttc |
400 |
Q |
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| T |
37558045 |
gagggccctttttgttaacaccatttggccttgcatttagaaggatttggttgtaaccttcactgtcataccttggaagtgcattttccccagcaacttc |
37557946 |
T |
|
| Q |
401 |
aaggttctctctccatccatcactcaagacctataaagaaatgaacataaaacaggctaaattatgagtaacttgtttcatgaatagcaacatgtcatgg |
500 |
Q |
| |
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| T |
37557945 |
aaggttctctctccatccatcactcaagacctataaagaaatgaacataaaacaggctaaattatgagtaacttgtttcatgaatagcaacatgtcatgg |
37557846 |
T |
|
| Q |
501 |
agtttatcaatcacagattctttttgattttgcagagaacatattagattagatttgaagccagaatgaattacctgctgaacaagttcctgggcacaac |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37557845 |
agtttatcaatcacagattctttttgattttgcagagaacatattagattagatttgaagccagaatgaattacctgctgaacaagttcctgggcacaac |
37557746 |
T |
|
| Q |
601 |
ttttggcttcttctggttgctccgaatttctcatctcaagacatgtgaaattcaagatagcattatgtcgagcaaacatccttgctac |
688 |
Q |
| |
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| T |
37557745 |
ttttggcttcttctggttgctccgaatttctcatctcaagacatgtgaaattcaagatagcattatgtcgagcgaacatccttgctac |
37557658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 189 - 432
Target Start/End: Complemental strand, 15504394 - 15504151
Alignment:
| Q |
189 |
acctgattagcatgcatctttttcacaaagattttgaatatatcaaaattttgtttctggaataattcttctgtcaaacgtaggtatgtgactccataca |
288 |
Q |
| |
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||||||| |||||||||||| |||||| |||||||||||||||||||| || || | || || |||| | ||| |||||||| |||||||||| |
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| T |
15504394 |
acctgatctgcatgcatctttaccacaaactttttgaatatatcaaaatttgattgttgcattagatcatctgatagacgaaggtatgttactccataca |
15504295 |
T |
|
| Q |
289 |
tccttagttttggagggccctttttgttaacaccatttggccttgcatttagaaggatttggttgtaaccttcactgtcataccttggaagtgcattttc |
388 |
Q |
| |
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||| |||||||||||||| | |||||| || || | ||| |||||||| || | ||||||||| ||| || |||||||||| |||||||||||| |
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| T |
15504294 |
tccgaagttttggagggccgtctttgttgaccccttgtggtcttgcattcagtatgatttggttataagctgttgcatcataccttgaaagtgcattttc |
15504195 |
T |
|
| Q |
389 |
cccagcaacttcaaggttctctctccatccatcactcaagacct |
432 |
Q |
| |
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||||||||||||| ||| |||||||| || ||||||| |||| |
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| T |
15504194 |
gccagcaacttcaatgttttctctccaacctccactcaatacct |
15504151 |
T |
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