View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8997_high_3 (Length: 431)
Name: NF8997_high_3
Description: NF8997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8997_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 367; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 20 - 418
Target Start/End: Original strand, 37753537 - 37753935
Alignment:
| Q |
20 |
aacccggaccatcatatgtcaaccaatgaacataacccgccacaaatattcctgaattaggaataaagctccaagatgggaagtcttcaatccttctcca |
119 |
Q |
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| T |
37753537 |
aacctggaccatcatatgtcaaccaatgaacataacccgccacaaatattcctgaatcaggaataaagctccaagatgggaagtcttcaatccttctcca |
37753636 |
T |
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| Q |
120 |
agaagacgtacccatagtatgaacttcaactgtagttctcttgacacaaaaggtaatagcaaaaaccttataattatcggcgaaaggatcatacccaaaa |
219 |
Q |
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| T |
37753637 |
agaagacgtacccatagtatgaacttcaactgtagttctcttgacacaaaaggtaatagcaaaaaccttataattatcggcgaaaggatcatacccaaaa |
37753736 |
T |
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| Q |
220 |
gtaaataaggaagaaggagttcttttcagtgaaatatattttaaaggaggcaatgttttgaatttattaatgaaagggttccacaaaacagcggaactat |
319 |
Q |
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| T |
37753737 |
gtaaataagcaagaaggcgatcttttcagtgaaatatattttaaaggaggcaatgttttgaatttattaatgaaagggttccacaaaacagcggaactat |
37753836 |
T |
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| Q |
320 |
aatcagtggtgagacaaatgatgccatcgcaagaacaccaattataaggagaagcaaattcctctgtgagacaagtagggtaactgagttgtgtctgtg |
418 |
Q |
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| T |
37753837 |
aatcagtggtgagacaaatgatgccatcgcaagaacaccattcataaggagaagcaaattcctctgtgagacaagtagggtaagtgagttgtgtctgtg |
37753935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 262 - 357
Target Start/End: Original strand, 37758171 - 37758265
Alignment:
| Q |
262 |
aaaggaggcaatgttttgaatttattaatgaaagggttccacaaaacagcggaactataatcagtggtgagacaaatgatgccatcgcaagaacac |
357 |
Q |
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| T |
37758171 |
aaaggaggcaacatcttggatttattaatggaagggttc-acaaaagggcagaactatcattaatggtgaaacaaatgatgccgtcgcaagaacac |
37758265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 262 - 355
Target Start/End: Original strand, 9608799 - 9608892
Alignment:
| Q |
262 |
aaaggaggcaatgttttgaatttattaatgaaagggttccacaaaacagcggaactataatcagtggtgagacaaatgatgccatcgcaagaac |
355 |
Q |
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|||||||||||| || | ||||| | ||| ||||||||||||||| |||||||| || ||| ||||||| |||| ||| ||||||||||||| |
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| T |
9608799 |
aaaggaggcaattttgttaattttctgatggaagggttccacaaaatagcggaaccatcatctatggtgaggcaaaggattccatcgcaagaac |
9608892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 86 - 209
Target Start/End: Original strand, 37757991 - 37758114
Alignment:
| Q |
86 |
agctccaagatgggaagtcttcaatccttctccaagaagacgtacccatagtatgaacttcaactgtagttctcttgacacaaaaggtaatagcaaaaac |
185 |
Q |
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|||| ||| |||| ||||||||||||||||||||| || ||||||| ||||||||| |||| || || | |||| ||| |||| || | ||||||| |
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| T |
37757991 |
agctacaacatggaaagtcttcaatccttctccaacaacttgtacccagagtatgaacactaactttatttttgttgatacagaaggaaacaacaaaaac |
37758090 |
T |
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| Q |
186 |
cttataattatcggcgaaaggatc |
209 |
Q |
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| T |
37758091 |
cttataatcatctgtgaaaggatc |
37758114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 311
Target Start/End: Original strand, 771957 - 772006
Alignment:
| Q |
262 |
aaaggaggcaatgttttgaatttattaatgaaagggttccacaaaacagc |
311 |
Q |
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|||||||||||| | |||||||| | |||| ||||||||||||||||||| |
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| T |
771957 |
aaaggaggcaatatcttgaatttttgaatggaagggttccacaaaacagc |
772006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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