View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8997_high_4 (Length: 416)
Name: NF8997_high_4
Description: NF8997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8997_high_4 |
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| [»] chr1 (1 HSPs) |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 18 - 416
Target Start/End: Original strand, 39210365 - 39210765
Alignment:
| Q |
18 |
ggtgtatcctcaaagcactcctccacaaagaatgttgttgcagaaccatagtgctcatgcttacgttaatccattcataccatatggtttttctgccctt |
117 |
Q |
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| T |
39210365 |
ggtgtatcctcaaagcactcctccacaaagaatgttgttgcagaaccatagtgctcatgcttacgt-aatcccttcataccatatggttcttctgccctt |
39210463 |
T |
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| Q |
118 |
ttacttcccactaccttc---tataacacaattgttaaggagttaaccgcttctgacgttacttttggaatgttggtgagttgtatgattgtctatatgc |
214 |
Q |
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| T |
39210464 |
ttacttcccactaccttcttctataacacaattgttaaggagttaaccgcttctgacgttacttttggaatgttggtgagttgtatgattgtctatatgc |
39210563 |
T |
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| Q |
215 |
agaatttgaattggcttgacttttgtcaatctgcatttcgggctgagaaaattgaattaactgtcattgattgcctgggaatacttgaaagttgttaacg |
314 |
Q |
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| T |
39210564 |
agaatttgaattggcttgacttttgtcaatctgcatttcaggctgagaaaattgaattaactgtcattgattgcctggaaatacttggaagttgtttacg |
39210663 |
T |
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| Q |
315 |
gatttttgtcatgatgaacagttgtcatgtgttttttctggtgaatggcaagcattgtgcagcgcgcgtaagttgattgaaggagcagagatcaaattag |
414 |
Q |
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| T |
39210664 |
gatttttgtcatgatgaacggttgtcatgtgttttttctggtgaatggcaagcattgtgcagcgcgcataagttgattgaaggagcaaagatcaaattag |
39210763 |
T |
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| Q |
415 |
gt |
416 |
Q |
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| T |
39210764 |
gt |
39210765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 161; Significance: 1e-85; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 203 - 416
Target Start/End: Complemental strand, 27510379 - 27510168
Alignment:
| Q |
203 |
ttgtctatatgcagaatttgaattggcttgacttttgtcaatctgcatttcgggctgagaaaattgaattaactgtcattgattgcctggga-atacttg |
301 |
Q |
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| T |
27510379 |
ttgtctatatgcagaatttgaattggcttggcttttgtcaatctgcatttcgggctgggaaaactgaatcaactgtcattgattgcctgggctatacttg |
27510280 |
T |
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| Q |
302 |
aaagttgttaacggatttttgtcatgatgaacagttgtcatgtgttttttctggtgaatggcaagcattgtgcagcgcgcgtaagttgattgaaggagca |
401 |
Q |
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| T |
27510279 |
gaagttgtttacggatttttgtcatga---acagttgtcatgtgttttttctggtgaatggcaagcattgtgcagcgcgcgtaagttgattgaaggagca |
27510183 |
T |
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| Q |
402 |
gagatcaaattaggt |
416 |
Q |
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| T |
27510182 |
aagatcaaattaggt |
27510168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 18 - 206
Target Start/End: Complemental strand, 27510624 - 27510436
Alignment:
| Q |
18 |
ggtgtatcctcaaagcactcctccacaaagaatgttgttgcagaaccatagtgctcatgcttacgttaatccattcataccatatggtttttctgccctt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| | |||||||||||||||| |||||||||| |
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| T |
27510624 |
ggtgtatcctcaaagcactcctccacaaagaatgttgttgcagaaccatagtgctcatgcgtacgtaaattccttcataccatatggttcttctgccctt |
27510525 |
T |
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| Q |
118 |
ttacttcccactaccttctataacacaattgttaaggagttaaccgcttctgacgttacttttggaatgttggtgagttgtatgattgt |
206 |
Q |
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| T |
27510524 |
ttacttcccactaccttttataacacaattgattaggagttaacctcttctgacgttacttttggaatgttggtgagttgtatgattgt |
27510436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 203 - 416
Target Start/End: Original strand, 27271016 - 27271230
Alignment:
| Q |
203 |
ttgtctatatgcagaatttgaattggcttgacttttgtcaatctgcatttcgggctgagaaaattgaattaactgtcattgattgcctgggaat-acttg |
301 |
Q |
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| T |
27271016 |
ttgtctatgtgcataatttgaattggcttggcttttgtcaatctgcatttccggctgtgaaaactgaattaactgtcattgatttcctgggctttacttg |
27271115 |
T |
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| Q |
302 |
aaagttgttaacggatttttgtcatgatgaacagttgtcatgtgttttttctggtgaatggcaagcattgtgcagcgcgcgtaagttgattgaaggagca |
401 |
Q |
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| T |
27271116 |
gaagttgtttatggaattctgtcataatgaacagctgtcatgtgatttttctggtgaatggcaaacattgtgcaacgcgcgtaagttgattgaaggagca |
27271215 |
T |
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| Q |
402 |
gagatcaaattaggt |
416 |
Q |
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| T |
27271216 |
aatatcaaattaggt |
27271230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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