View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8997_low_1 (Length: 721)
Name: NF8997_low_1
Description: NF8997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8997_low_1 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 668; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 668; E-Value: 0
Query Start/End: Original strand, 13 - 721
Target Start/End: Complemental strand, 52423385 - 52422677
Alignment:
| Q |
13 |
cagagacgaatccccttcgaaataagagatagaaacaatctcccaataaagtagaaatcaaacacaccagcctgcaaagaaccaacagcgctgcacttta |
112 |
Q |
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| T |
52423385 |
cagagacgaatccccttcgaaataagagatagaaacaatctcccaataaagtagaaatcaaacacaccagcctgcaaagaaccaacagcgctgcacttta |
52423286 |
T |
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| Q |
113 |
ttggagatttaggnnnnnnncactgacttggaaacttgtaatctaaggaactggaatagatgctaatctctatcaattttataataatttaactgatcaa |
212 |
Q |
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| T |
52423285 |
ttggagatttaggtttttttcactgacttggaaacttgtaatctaaggaactggaatagatgctaatctctatcaattttataataatttaaatgatcaa |
52423186 |
T |
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| Q |
213 |
tgattatgttgtcatcttctattcaaagaattggaagaagttgctctactcagacctacccagtatgatagaaaacttgaaacaaacttgcatttgaata |
312 |
Q |
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| T |
52423185 |
tgattatgttgtcatcttctattcacagaattggaagaagttgctctactcagacctacccagtatgatagaaaacttgaaacaaacttgcatttgaata |
52423086 |
T |
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| Q |
313 |
gattggttattagacctaagaggttggtgattaaattcgacccaatttttcgcattattaagaatttaaacaaaagcactcgtgggaacacataatattg |
412 |
Q |
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| T |
52423085 |
gattggttattagacctaagaggttggtgattaaattcgacccaatttttcgcattattaagaatttaaacaaaagcactcgtgggaacacataatattg |
52422986 |
T |
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| Q |
413 |
gatttctgttgtaatttagaattgaacatgcagtgtctcccaatataagtaacttgcattataaatgataactaacgttttttctttcctgtattattga |
512 |
Q |
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| T |
52422985 |
gatttctgttgtaatttagaattgaatatgcagtgtctcccaatataagtaacttgccttataaatgataactaacgttttttctttcctgtattattga |
52422886 |
T |
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| Q |
513 |
aggagtcaaatcttaaatcaatgtaatgatcactacaccaaaatattgttaaataaactcaaaagcttgtcactatttctcacgttttgatttattaaaa |
612 |
Q |
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| T |
52422885 |
aggagtcaaatcttaaatcaatgtaatgatcactacaccaaaatattgttaaataaactcaaaagcttgtcactatttctcacgttttgatttattaaaa |
52422786 |
T |
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| Q |
613 |
caacatatttcctagcactttcagagccaacaagcacagtagaaatggtttggttattaatgattttatggtacatttcttgcaccacagagaatataag |
712 |
Q |
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| T |
52422785 |
caacatatttcctagcactctcagagccaacaagcacagtagaaatggtttggttattaatgattttatggtacatttcttgcaccacagagaatataag |
52422686 |
T |
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| Q |
713 |
caatacgaa |
721 |
Q |
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| T |
52422685 |
caatacgaa |
52422677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 137 - 361
Target Start/End: Complemental strand, 42716166 - 42715940
Alignment:
| Q |
137 |
gacttggaaacttgtaatctaaggaactgga-atagatgctaatctctatcaattttataataatttaactgatcaatgattatgttgtcatcttctatt |
235 |
Q |
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|||||||||||||||||||||||||| |||| ||||||||||||| || ||||||| |||||| | ||| |||||||||||||| | ||||||||||| |
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| T |
42716166 |
gacttggaaacttgtaatctaaggaattggagatagatgctaatcagtagcaattttttaataaatgaacagatcaatgattatgctttcatcttctata |
42716067 |
T |
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| Q |
236 |
caaagaat-tggaagaagttgctctactcagacctaccc-agtatgatagaaaacttgaaacaaacttgcatttgaatagattggttattagacctaaga |
333 |
Q |
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| T |
42716066 |
caaaaaaactgtaagaagtttctctactcagacctaccccagtatgatagagaacttgaaacaaacttgcttttgaatagattggttattagacctaaga |
42715967 |
T |
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| Q |
334 |
ggttggtgattaaattcgacccaatttt |
361 |
Q |
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| T |
42715966 |
ggttggtgattaaatt-gacccaatttt |
42715940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 673 - 717
Target Start/End: Complemental strand, 42715290 - 42715246
Alignment:
| Q |
673 |
tgattttatggtacatttcttgcaccacagagaatataagcaata |
717 |
Q |
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| T |
42715290 |
tgattttatggtacatttcttgcttcacagagaatatcagcaata |
42715246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 445 - 481
Target Start/End: Complemental strand, 42715529 - 42715493
Alignment:
| Q |
445 |
gtgtctcccaatataagtaacttgcattataaatgat |
481 |
Q |
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| T |
42715529 |
gtgtctcccaatataagtaatttgcattataaatgat |
42715493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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