View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8997_low_13 (Length: 409)
Name: NF8997_low_13
Description: NF8997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8997_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 339; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 19 - 394
Target Start/End: Complemental strand, 11442273 - 11441898
Alignment:
| Q |
19 |
ttaatgactgtggtgtgagttttgcttttactatacctgaaaatgttaagaaattagaaccattaggcattcctattatttcagtgccagaaaatgaaaa |
118 |
Q |
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| T |
11442273 |
ttaatgactgtggtgtgagttttgcttttactatacctgaaaatgtaaagaaattagaaccattaggcattcctattatttctgtgccagaaaatgaaaa |
11442174 |
T |
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| Q |
119 |
ggatttgaagcatgcttgtttcacatgnnnnnnnaacctgatttctggtaactttgttttgcctcaaaagccggttattaaacaagaagacactgctgct |
218 |
Q |
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| T |
11442173 |
ggatttgaagcatgcttgtttctcatgtttttttaacctgatttctggtaactttgttttgcctcaaaagtcggttattaaacaagaagacactgctgct |
11442074 |
T |
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| Q |
219 |
atattgttttcttctggtactactggtgtgagcaaaggagttgttttaactcatagaaatcttattgctatggttgagctttcggcaaggtttgaagctt |
318 |
Q |
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| T |
11442073 |
atattgttttcttctggtactactggtgtgagcaaaggagttgttttaactcatagaaatcttattgctatggttgagctttcggcaaggtttgaagctt |
11441974 |
T |
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| Q |
319 |
ctaaatatgaatactctagttccaaaaatgtgtatctagatgttttgccgatgttccatttatatggtttatctct |
394 |
Q |
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| T |
11441973 |
ctaaatatgaatactctagttccaaaaatgtgtatctagatgttttgccgatgttccatttatatggtttatctct |
11441898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 153 - 389
Target Start/End: Complemental strand, 11452676 - 11452440
Alignment:
| Q |
153 |
aacctgatttctggtaactttgttttgcctcaaaagccggttattaaacaagaagacactgctgctatattgttttcttctggtactactggtgtgagca |
252 |
Q |
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| T |
11452676 |
aaccttatttatggtgactttgatttgcctcaaaggccggttattaaacaagaagacactgctggtatattatattcttctggtactacaggtgtgagca |
11452577 |
T |
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| Q |
253 |
aaggagttgttttaactcatagaaatcttattgctatggttgagctttcggcaaggtttgaagcttctaaatatgaatactctagttccaaaaatgtgta |
352 |
Q |
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| T |
11452576 |
aaggagttgttttaactcatagaaatcttattgctatggttgagctttttgtgaggtttgaagcttctcaatatgattactctagttccaagactgtgca |
11452477 |
T |
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| Q |
353 |
tctagatgttttgccgatgttccatttatatggttta |
389 |
Q |
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| T |
11452476 |
tctagctgttttgcctatgttccatttatatggttta |
11452440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 31 - 145
Target Start/End: Complemental strand, 11452834 - 11452720
Alignment:
| Q |
31 |
gtgtgagttttgcttttactatacctgaaaatgttaagaaattagaaccattaggcattcctattatttcagtgccagaaaatgaaaaggatttgaagca |
130 |
Q |
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| T |
11452834 |
gtgtgagcttttcttttactatacctgaaaatatcaagaagctagagtcattaggcattcctgttattgctgtgccagaaaatgaaatggatttgaagca |
11452735 |
T |
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| Q |
131 |
tgcttgtttcacatg |
145 |
Q |
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| T |
11452734 |
tgattgtttctcatg |
11452720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 128; Significance: 5e-66; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 27 - 401
Target Start/End: Original strand, 29911980 - 29912360
Alignment:
| Q |
27 |
tgtggtgtgagttttgcttttactatacctgaaaatgttaagaaattagaaccattagg---catt---cctattatttcagtgccagaaaatgaaaagg |
120 |
Q |
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| T |
29911980 |
tgtggtgtgagttttgcttttactatacctgaaaatgtcaagaaactagagctattaggtggcattaatcccattattgctgtgccagaaaatgagaagg |
29912079 |
T |
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| Q |
121 |
atttgaagcatgcttgtttcacatgnnnnnnnaacctgatttctggtaactttgttttgcctcaaaagccggttattaaacaagaagacactgctgctat |
220 |
Q |
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|||||| | ||| ||||| || | ||||| ||| |||||| |||| ||||||||||| | ||||||||||| ||||| ||||||| ||| |
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| T |
29912080 |
atttgaggaatgacggtttctcaagtttctttaaccttctttatggtaaatttgatttgcctcaaagggtagttattaaacaggaagatactgctggtat |
29912179 |
T |
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| Q |
221 |
attgttttcttctggtactactggtgtgagcaaaggagttgttttaactcatagaaatcttattgctatggttgagctttcggcaaggtttgaagcttct |
320 |
Q |
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||||| ||| ||||| ||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| | || |||||||||||| |
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| T |
29912180 |
attgtattcatctgggactacaggtgtgagtaaaggagttgttttaactcatagaaatcttatttctatggttgagctttttgtgagatttgaagcttct |
29912279 |
T |
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| Q |
321 |
aaatatgaatactctagttccaaaaatgtgtatctagatgttttgccgatgttccatttatatggtttatctctctctgct |
401 |
Q |
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||||||| |||||| ||||||| | ||||| ||||| ||||||||| ||||| ||| | ||||||||||| |||| |||| |
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| T |
29912280 |
caatatgattactcttgttccaagagtgtgtttctagctgttttgccaatgtttcatgtgtatggtttatcgctctttgct |
29912360 |
T |
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