View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8997_low_15 (Length: 312)
Name: NF8997_low_15
Description: NF8997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8997_low_15 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 19 - 296
Target Start/End: Original strand, 37428628 - 37428905
Alignment:
| Q |
19 |
caaccgttgcactctctttccataacccttattatatttatttctgtgatttgtaaatgatgcaggaagtgtatgagcagcagaaagaattaattttact |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37428628 |
caaccgttgcactctctttccataacccttattatatttatttctgtgatttgtaaatgatgcaggaagtgtatgagcagcagaaagaattaattttact |
37428727 |
T |
|
| Q |
119 |
tggagagagggtgttacttgccactttagattttgacctgaatgttcaacttccatatgagccccttgctgagggcataatcaagctcaatctcgcaaag |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37428728 |
tggagagagggtgttacttgccactttagatttttacctgaatgttcaacttccgtatgagccccttgctgagggcataatcaagctcaatctcgcaaag |
37428827 |
T |
|
| Q |
219 |
aattatgcccttgtacaagctgcatggtcctttgttgatgacgggtatgattaagttgccacttgttctaatttaatt |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37428828 |
aattatgcccttgtacaagctgcatggtcctttgttgatgacgggtatgattaagttgccacttgttctaatttaatt |
37428905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 68 - 296
Target Start/End: Complemental strand, 37436478 - 37436253
Alignment:
| Q |
68 |
tttgtaaatgatgcaggaagtgtatgagcagcagaaagaattaattttacttggagagagggtgttacttgccactttagattttgacctgaatgttcaa |
167 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||| | |||||||| |
|
|
| T |
37436478 |
tttgtaaatgatgcaggaagtgtatgagcagcagaaagaattaattttacttggagaaagggttgtacttgccactttaggttttgacttcgatgttcaa |
37436379 |
T |
|
| Q |
168 |
cttccatatgagccccttgctgagggcataatcaagctcaatctcgcaaagaattatgcccttgtacaagctgcatggtcctttgttgatgacgggtatg |
267 |
Q |
| |
|
||||||| ||||||| || || ||||| ||| ||||| | ||| ||| ||||||||| ||||| ||||||| |||| || |||| ||||||| |
|
|
| T |
37436378 |
gaaccatatgggccccttattgcggccataaagaagttcaatgttgca---aataatgcccttgcacaagttgcatggaactttcttaatgatgggtatg |
37436282 |
T |
|
| Q |
268 |
attaagttgccacttgttctaatttaatt |
296 |
Q |
| |
|
||| || |||||||||||||||||||| |
|
|
| T |
37436281 |
attgtgtatccacttgttctaatttaatt |
37436253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 71 - 280
Target Start/End: Original strand, 32505244 - 32505451
Alignment:
| Q |
71 |
gtaaatgatgcaggaagtgtatgagcagcagaaagaattaattttacttggagagagggtgttacttgccactttagattttgacctgaatgttcaactt |
170 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| | ||||||| ||||||| |||| | |
|
|
| T |
32505244 |
gtaaatgatgtaggaagtgtatgagcagcagaaagagttaattttacttggagagagggttgtacttgccactttggcttttgacttgaatgtccaacat |
32505343 |
T |
|
| Q |
171 |
ccatatgagccccttgctgagggcataatcaagctcaatctcgcaaagaattatgcccttgtacaagctgcatggtcctttgttgatgacgggtatg-at |
269 |
Q |
| |
|
|||||| ||||||||| |||| ||||| ||| ||||| | || |||| | ||||||| ||||| ||||||| ||||||| |||| ||||||| || |
|
|
| T |
32505344 |
ccatataagccccttgtcgaggccataaagaagttcaatgttgctaaga---acgcccttgcacaagttgcatggaactttgttaatgatgggtatgaat |
32505440 |
T |
|
| Q |
270 |
taagttgccac |
280 |
Q |
| |
|
|||||| |||| |
|
|
| T |
32505441 |
taagtttccac |
32505451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 81 - 130
Target Start/End: Original strand, 28518007 - 28518056
Alignment:
| Q |
81 |
caggaagtgtatgagcagcagaaagaattaattttacttggagagagggt |
130 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |||||| ||||||||| |
|
|
| T |
28518007 |
caggaagtgtatgagcagcagaaggaattaattctacttgcagagagggt |
28518056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University