View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8997_low_16 (Length: 299)
Name: NF8997_low_16
Description: NF8997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8997_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 17 - 287
Target Start/End: Complemental strand, 28721341 - 28721067
Alignment:
| Q |
17 |
aattgggccatagcatgccctaacccaattccttcccattacgcctaatgtaacttaacaccgtcaaatccccttttccttccatcgcttgaattagggt |
116 |
Q |
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| T |
28721341 |
aattgggccatagcatgccctaacccaattccttcccattacgcctaacgtaacttaacaccgtcaaatccccttttccttccatcgcttgaattagggt |
28721242 |
T |
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| Q |
117 |
ttcatcgtcgcactcaaacaccgcaatggagggcccagcgacggtggatagaatcagctccttatcaaacaagtta----gtcgcattctatctcttctt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
28721241 |
ttcatcgtcgcactcaaacaccgcaatggagggcccagcgacggtggatagaatcagctccttatcaaacaagttactctgtcgcattctatctcttctt |
28721142 |
T |
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| Q |
213 |
ccgatcaaacaagctttcaccaccaccgtcctttcaacccgctggaccccactatgctactccctcaccactctc |
287 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28721141 |
ccgatcaaacaagctttcaccaccaccgtcctttcaacccgctggaccccactatgctactccctcaccactctc |
28721067 |
T |
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