View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8997_low_19 (Length: 297)
Name: NF8997_low_19
Description: NF8997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8997_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 7 - 251
Target Start/End: Original strand, 32302270 - 32302513
Alignment:
| Q |
7 |
gagtttggtggtggttcgtaaatccgttttgatccttcatgattgaatttggatagagtggctgaaatgacatttattttgatgttttcatagtgagttg |
106 |
Q |
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| T |
32302270 |
gagtttgggggtggttcgtaaatctgtttcgatccttcatgtttgaatttgcatagagtggctgaaatgacatttattt-gatgttttcatagtgagttg |
32302368 |
T |
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| Q |
107 |
ttggtgtttggacttgttattgtgttggtggtcgagttcaaacatcattatcaaatatccaacttggtaacgtagttgattgctctagattaggatttgt |
206 |
Q |
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| T |
32302369 |
ttggtgtttggactcgttattgtgttggtggtcgagtttaaacatcattatcaaatatccaacttcgtaacgtagttgattgctctagattaggatttgt |
32302468 |
T |
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| Q |
207 |
ggctactttacattatagggttgttctatatcacgcttttgggtt |
251 |
Q |
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| T |
32302469 |
ggctactttatattatagggttgttctatatcacacttttgggtt |
32302513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 32275767 - 32275811
Alignment:
| Q |
81 |
tattttgatgttttcatagtgagttgttggtgtttggacttgtta |
125 |
Q |
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| T |
32275767 |
tattttgatgttttcatagtgaattgttggtgtttggactcgtta |
32275811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 213 - 273
Target Start/End: Original strand, 32275889 - 32275949
Alignment:
| Q |
213 |
tttacattatagggttgttctatatcacgcttttgggttgttgtttgtattaattacattg |
273 |
Q |
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| T |
32275889 |
tttatattatagggtttttctatatcacgcttttgagttgttgtttgtttcaattgcattg |
32275949 |
T |
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