View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8997_low_6 (Length: 558)

Name: NF8997_low_6
Description: NF8997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8997_low_6
NF8997_low_6
[»] chr7 (5 HSPs)
chr7 (55-558)||(28891924-28892428)
chr7 (278-346)||(24672791-24672859)
chr7 (293-342)||(8558804-8558853)
chr7 (304-377)||(32888970-32889043)
chr7 (293-325)||(34925274-34925306)
[»] chr2 (5 HSPs)
chr2 (277-377)||(28804370-28804470)
chr2 (295-345)||(35928065-35928115)
chr2 (293-338)||(38434182-38434227)
chr2 (293-337)||(9882605-9882649)
chr2 (283-339)||(11521806-11521862)
[»] chr3 (1 HSPs)
chr3 (293-345)||(5038249-5038301)
[»] chr1 (3 HSPs)
chr1 (293-330)||(15707576-15707613)
chr1 (293-332)||(46982851-46982890)
chr1 (293-337)||(46937635-46937679)
[»] chr5 (2 HSPs)
chr5 (302-346)||(42440160-42440204)
chr5 (293-345)||(17124805-17124857)
[»] chr8 (2 HSPs)
chr8 (303-346)||(21226893-21226936)
chr8 (293-337)||(10372611-10372655)
[»] chr6 (2 HSPs)
chr6 (288-337)||(29166816-29166865)
chr6 (400-452)||(507810-507862)


Alignment Details
Target: chr7 (Bit Score: 477; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 55 - 558
Target Start/End: Complemental strand, 28892428 - 28891924
Alignment:
Q  55 tcccaaatcacataccttgcgtaggtcttgcatgaacttcaacatctctggagtaaccccctaacaattgagtaggcaacagtaaatagatgtgatccaa 154  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28892428 tcccaaatcacataccttgcgtaggtcttgcatgaacttcaacatctctggagtaaccccctaacaattgagtaggcaacagtaaatagatgtgatccaa 28892329  T
Q  155 agccaaacaataaaaaataacaaatccatattttctagtcttgttcacagcaaggagaaatcacggcattttatgataagcagactgatgattaacatta 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||    
T  28892328 agccaaacaataaaaaataacaaatccatattttctagtcttgttcacagcaaggagaagtcacggcattttatgataagcggactgatgattaagatta 28892229  T
Q  255 gatgactcaacagcaatattgccaattacggatcatgcaaaatagcagtttgttcaaattcggctatgctatagtgttatagcaccgctatatccattat 354  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  28892228 gatgactcaacagcaatattgccaattacggatcatgcaaaatagcagtttgttcaaattcggctatgctatagtgttatagcatcgctatatccattat 28892129  T
Q  355 ttggaaatcc-tttgtactaaataaaggatcgtgaaacagtactgatttgttaaaattctgctaagttacaacgctacagccgttatttgacaatactgc 453  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28892128 ttggaaatccttttgtactaaataaaggatcgtgaaacagtactgatttgttaaaattctgctaagttacaacgctacagccgttatttgacaatactgc 28892029  T
Q  454 ttagcagacaatagatctgataacaattcagaatcatataaaattgcagcattgctaaattgatcacaacaaaataaccacactaatggagtgtcaatat 553  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  28892028 ttagcagacaatagatctgataacaattcagaatcatataaaattgcagcattgctaaattgatcacaacaaaataactacactaatggagtgtcaatat 28891929  T
Q  554 ctgta 558  Q
    |||||    
T  28891928 ctgta 28891924  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 278 - 346
Target Start/End: Original strand, 24672791 - 24672859
Alignment:
Q  278 aattacggatcatgcaaaatagcagtttgttcaaattcggctatgctatagtgttatagcaccgctata 346  Q
    |||||||||||||| |||||||| |||||||||||||| |||| || |||||| ||| |||||||||||    
T  24672791 aattacggatcatggaaaatagcggtttgttcaaattctgctacgcaatagtgatatggcaccgctata 24672859  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 342
Target Start/End: Original strand, 8558804 - 8558853
Alignment:
Q  293 aaaatagcagtttgttcaaattcggctatgctatagtgttatagcaccgc 342  Q
    ||||||| ||||||||||||||| ||||||||| | ||||||||| ||||    
T  8558804 aaaatagtagtttgttcaaattccgctatgctacaatgttatagctccgc 8558853  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 377
Target Start/End: Complemental strand, 32889043 - 32888970
Alignment:
Q  304 ttgttcaaattcggctatgctatagtgttatagcaccgctatatccattatttggaaatcctttgtactaaata 377  Q
    ||||||||||||  |||||||| || |||||||| |||| ||| ||| ||||||  ||| ||||||||||||||    
T  32889043 ttgttcaaattccactatgctacagagttatagcgccgcaatagccactatttgacaatactttgtactaaata 32888970  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 293 - 325
Target Start/End: Original strand, 34925274 - 34925306
Alignment:
Q  293 aaaatagcagtttgttcaaattcggctatgcta 325  Q
    ||||||||||||||||||||||| |||||||||    
T  34925274 aaaatagcagtttgttcaaattctgctatgcta 34925306  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 277 - 377
Target Start/End: Complemental strand, 28804470 - 28804370
Alignment:
Q  277 caattacggatcatgcaaaatagcagtttgttcaaattcggctatgctatagtgttatagcaccgctatatccattatttggaaatcctttgtactaaat 376  Q
    |||| |||||||||| |||||||||||||||||||||| || |||| |||| ||||||||   | ||||| || |||||||  ||| |||||||||||||    
T  28804470 caatcacggatcatggaaaatagcagtttgttcaaatttggatatgttatattgttatagtgtcactatagccgttatttgacaatactttgtactaaat 28804371  T
Q  377 a 377  Q
    |    
T  28804370 a 28804370  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 295 - 345
Target Start/End: Complemental strand, 35928115 - 35928065
Alignment:
Q  295 aatagcagtttgttcaaattcggctatgctatagtgttatagcaccgctat 345  Q
    |||||||| |||||||||||| ||||||| ||||| |||| ||||||||||    
T  35928115 aatagcagattgttcaaattccgctatgcaatagtattatcgcaccgctat 35928065  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 338
Target Start/End: Complemental strand, 38434227 - 38434182
Alignment:
Q  293 aaaatagcagtttgttcaaattcggctatgctatagtgttatagca 338  Q
    ||||||||||||||||||||||| |||||| || |||| |||||||    
T  38434227 aaaatagcagtttgttcaaattctgctatgttacagtgctatagca 38434182  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 293 - 337
Target Start/End: Original strand, 9882605 - 9882649
Alignment:
Q  293 aaaatagcagtttgttcaaattcggctatgctatagtgttatagc 337  Q
    |||||| |||||| |||||||| ||||||||||||||| ||||||    
T  9882605 aaaataacagtttattcaaatttggctatgctatagtgctatagc 9882649  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 283 - 339
Target Start/End: Original strand, 11521806 - 11521862
Alignment:
Q  283 cggatcatgcaaaatagcagtttgttcaaattcggctatgctatagtgttatagcac 339  Q
    ||||||||  |||||||| |||||||||||||| |||||| || |||||| ||||||    
T  11521806 cggatcatagaaaatagctgtttgttcaaattccgctatgatacagtgttgtagcac 11521862  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 293 - 345
Target Start/End: Original strand, 5038249 - 5038301
Alignment:
Q  293 aaaatagcagtttgttcaaattcggctatgctatagtgttatagcaccgctat 345  Q
    |||||||||||||||||||| || |||| ||||||||| ||||||||||||||    
T  5038249 aaaatagcagtttgttcaaaatccgctacgctatagtgctatagcaccgctat 5038301  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 293 - 330
Target Start/End: Original strand, 15707576 - 15707613
Alignment:
Q  293 aaaatagcagtttgttcaaattcggctatgctatagtg 330  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  15707576 aaaatagcagtttgttcaaattccgctatgctatagtg 15707613  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 293 - 332
Target Start/End: Complemental strand, 46982890 - 46982851
Alignment:
Q  293 aaaatagcagtttgttcaaattcggctatgctatagtgtt 332  Q
    ||||||||||||||||||||||  ||||||||||||||||    
T  46982890 aaaatagcagtttgttcaaattttgctatgctatagtgtt 46982851  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 293 - 337
Target Start/End: Complemental strand, 46937679 - 46937635
Alignment:
Q  293 aaaatagcagtttgttcaaattcggctatgctatagtgttatagc 337  Q
    |||||||| |||||||||||||| ||||||| | |||||||||||    
T  46937679 aaaatagcggtttgttcaaattccgctatgcaacagtgttatagc 46937635  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 302 - 346
Target Start/End: Complemental strand, 42440204 - 42440160
Alignment:
Q  302 gtttgttcaaattcggctatgctatagtgttatagcaccgctata 346  Q
    |||||||||||||| ||||||||| ||||||||||||| ||||||    
T  42440204 gtttgttcaaattccgctatgctacagtgttatagcactgctata 42440160  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 293 - 345
Target Start/End: Original strand, 17124805 - 17124857
Alignment:
Q  293 aaaatagcagtttgttcaaattcggctatgctatagtgttatagcaccgctat 345  Q
    |||| ||||||||||||||||||  |||||||| |||||| ||||||| ||||    
T  17124805 aaaagagcagtttgttcaaattccactatgctacagtgttgtagcaccactat 17124857  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 346
Target Start/End: Complemental strand, 21226936 - 21226893
Alignment:
Q  303 tttgttcaaattcggctatgctatagtgttatagcaccgctata 346  Q
    ||||||||||||| |||||||||||| | |||||||||||||||    
T  21226936 tttgttcaaattccgctatgctatagcggtatagcaccgctata 21226893  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 293 - 337
Target Start/End: Complemental strand, 10372655 - 10372611
Alignment:
Q  293 aaaatagcagtttgttcaaattcggctatgctatagtgttatagc 337  Q
    |||||| ||||||||||||||| |||||||||||| || ||||||    
T  10372655 aaaataacagtttgttcaaatttggctatgctatattgctatagc 10372611  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 337
Target Start/End: Complemental strand, 29166865 - 29166816
Alignment:
Q  288 catgcaaaatagcagtttgttcaaattcggctatgctatagtgttatagc 337  Q
    |||| |||||||||||||||||||||||  |||||| | |||||||||||    
T  29166865 catggaaaatagcagtttgttcaaattccactatgcaacagtgttatagc 29166816  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 400 - 452
Target Start/End: Complemental strand, 507862 - 507810
Alignment:
Q  400 tttgttaaaattctgctaagttacaacgctacagccgttatttgacaatactg 452  Q
    |||||| ||||||||||| ||||||  |||||| ||| |||||||||||||||    
T  507862 tttgtttaaattctgctatgttacagtgctacaaccgctatttgacaatactg 507810  T

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