View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8997_low_7 (Length: 550)
Name: NF8997_low_7
Description: NF8997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8997_low_7 |
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| [»] scaffold0170 (1 HSPs) |
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Alignment Details
Target: scaffold0170 (Bit Score: 155; Significance: 5e-82; HSPs: 1)
Name: scaffold0170
Description:
Target: scaffold0170; HSP #1
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 254 - 420
Target Start/End: Complemental strand, 19899 - 19733
Alignment:
| Q |
254 |
aacaaacttattttctataattcccaacatttcaagaaacaaaagtaaatgtaacatttgcattaagtctgctcaaggttcaaagatctacacaagcttc |
353 |
Q |
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| T |
19899 |
aacaaacttattttctataattgccaacatttcaaggaacaaaagtaaatgtaacatttgcattaagtctgctcaaggttcaaagatctacacaagcttc |
19800 |
T |
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| Q |
354 |
caaatatgattcaagaaaaagaagacaagatgcaaccgcaactagatctgaaagaattttcatgata |
420 |
Q |
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| T |
19799 |
caaatatgattcaagaaaaagaagacaagctgcaaccgcaactagatctgaaagaattttcatgata |
19733 |
T |
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Target: chr3 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 291 - 403
Target Start/End: Original strand, 3001600 - 3001706
Alignment:
| Q |
291 |
aacaaaagtaaatgtaacatttgcattaagtctgctcaaggttcaaagatctacacaagcttccaaatatgattcaagaaaaagaagacaagatgcaacc |
390 |
Q |
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| T |
3001600 |
aacaaaaataactatagcatttgcatcaaatctgctcaaggttcatagatctacacatgcttccatatttgattc------aagaagacaagctgcaacc |
3001693 |
T |
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| Q |
391 |
gcaactagatctg |
403 |
Q |
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| T |
3001694 |
gcaactagatctg |
3001706 |
T |
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