View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8998_low_2 (Length: 644)
Name: NF8998_low_2
Description: NF8998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8998_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-175; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 21 - 375
Target Start/End: Original strand, 9267866 - 9268218
Alignment:
| Q |
21 |
ggaatgatatcaatgatgcacttcaacaacattataatattgagaaggtgattttccttttaatgcagcccttccatgcatatcaaagtgagcatttcac |
120 |
Q |
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| T |
9267866 |
ggaatgatatcaatgatgcacttcatcaacattataatattga--aggtgattttccttttaatgcagcccttccatgcatatcaaagtgagcatttcac |
9267963 |
T |
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| Q |
121 |
aattgaattgcggagtctatggaagagcataaatatgaaactttggccacattttgatgagacaagtaaccatacagaggagtgtgtaattcatctccta |
220 |
Q |
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| T |
9267964 |
aattgaattgtggagtctatggaagagcataaatatgaaactttggccacattttgatgagacaagtaaccagacagaggagtgtgtaattcatctacta |
9268063 |
T |
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| Q |
221 |
gaagacttgaaattggctaatgcgattaggcagcctagacactgtcgtacaaatggtaataccaacacatgtacaatgactcagcaggggtcgaatagtg |
320 |
Q |
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| T |
9268064 |
gaagacttgaaattggctaatgcgattaggcagcctagacactgtcgtacaaatggtaatagcaacacatgtacaatgactcagcaggggtcgcatagtg |
9268163 |
T |
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| Q |
321 |
atttggttcatgcgtgggtgaaatcggctcttaatgacagccaatcatacactat |
375 |
Q |
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| T |
9268164 |
atttggttcatgcgtgggtgaaatcggctcttgatgacagccagtcatacactat |
9268218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 485 - 630
Target Start/End: Original strand, 9268330 - 9268475
Alignment:
| Q |
485 |
tactaatatatgatggggaaagtgataatggaacgaaaagaaacaaaaataaaggcacaatatggcagttgtgaaattaagaatgtcattggattataaa |
584 |
Q |
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| T |
9268330 |
tactaatatatgatggggaaagtgataatggaatgaaaagaaacaaaaattaagccacaatatggcagttgtgaaattaagaatgtcaatggattataaa |
9268429 |
T |
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| Q |
585 |
aagaggaggtgggttgagcaaaagaaaaacgtaacaacatgatgtc |
630 |
Q |
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| T |
9268430 |
aaggggaggtgggttgagcaaaagaaaaacgtaacaacatgctgtc |
9268475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 485 - 593
Target Start/End: Original strand, 47701580 - 47701688
Alignment:
| Q |
485 |
tactaatatatgatggggaaagtgataatggaacgaaaagaaacaaaaataaaggcacaatatggcagttgtgaaattaagaatgtcattggattataaa |
584 |
Q |
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| T |
47701580 |
tactaatatatgatgtgcaaagtgagaatgaaataaaaagaaacaaaaataaagccacaacatggcagttgtgaaactaagaatgacattggattataaa |
47701679 |
T |
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| Q |
585 |
aagaggagg |
593 |
Q |
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| T |
47701680 |
aagaggagg |
47701688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 132 - 187
Target Start/End: Complemental strand, 29816115 - 29816060
Alignment:
| Q |
132 |
ggagtctatggaagagcataaatatgaaactttggccacattttgatgagacaagt |
187 |
Q |
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| T |
29816115 |
ggagtatatggaagagcagaaatttgaaactttggcaacatgtcgatgagacaagt |
29816060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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