View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8998_low_4 (Length: 415)
Name: NF8998_low_4
Description: NF8998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8998_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 173 - 399
Target Start/End: Complemental strand, 43500711 - 43500488
Alignment:
| Q |
173 |
caatttcacagccatcactatgctaagtcctaaaaccaccacctctccaatagcccatgtgctgcacatgattgatgcaataatataatatagtccacca |
272 |
Q |
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| T |
43500711 |
caatttcacagccatcactatgctaagtcctaaaaccaccacctctccaatagcccatgtgctgcacatgattgatgcaataatataatatagtccacca |
43500612 |
T |
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| Q |
273 |
ttgtaaagcactagttagtggctacattaaattacattacatattatatatacaccaatttgttcttctttgttattattaattttagcatcttcctttg |
372 |
Q |
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| T |
43500611 |
ttgtaaagcactagttagtggctacattacattacat---atattatatatacaccaatttgttcttctttgttattattaattttagcatcttcctttg |
43500515 |
T |
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| Q |
373 |
gtttatgagagcctgctgccaaagtat |
399 |
Q |
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| T |
43500514 |
gtttatgagagcctgctgccaaagtat |
43500488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 25 - 135
Target Start/End: Complemental strand, 43500873 - 43500749
Alignment:
| Q |
25 |
acgcggttgtaataattgttgatgttaggctgggaggaagaataacacactgtagcattcgat--------------actttaggaatatttccttttct |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
43500873 |
acgcggttgtaataattgttgatgttaggctgggaggaagaataacacactgtagcattcgataggaacttgtaatcactttaggaatatttccttttct |
43500774 |
T |
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| Q |
111 |
cagaccctcaatatacaccgtagac |
135 |
Q |
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| T |
43500773 |
cagaccctcaatatacaccgtagac |
43500749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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