View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8998_low_6 (Length: 239)
Name: NF8998_low_6
Description: NF8998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8998_low_6 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 29453642 - 29453863
Alignment:
| Q |
18 |
taaggagaatcatcttatagttaataataatattaaaacaaaaacaaattcattagaacaaggagattgtcaagtccttataaataaccatgttagacaa |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
29453642 |
taaggagaatcatcttatagttaataataatattaaaacaaaaacaaattcattagaacaaggagattgtcaagtccttataaataaccatgttagataa |
29453741 |
T |
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| Q |
118 |
tcattcaaatatacaatcaatctaagcaatcataaaaacgaatatttactcaatcgattataatgaaaacaacatatacaaatgaatgaaaattcaaaca |
217 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29453742 |
tcattcaaaaatacaatcaatctaagcaatcataaaaacgaatatttactcaatcgattataatgaaaacaacatatacaaatgaatgaaaattcaaaca |
29453841 |
T |
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| Q |
218 |
actaaaccacagaggaggaact |
239 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
29453842 |
actaaaccacagaggaggaact |
29453863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 20 - 239
Target Start/End: Original strand, 29430511 - 29430728
Alignment:
| Q |
20 |
aggagaatcatcttatagttaataataatattaaaacaaaaacaaattcattagaacaaggagattgtcaagtccttataaataaccatgttagacaatc |
119 |
Q |
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|||||||| ||||||||||| ||| |||||| |||| | |||||||||| || |||| | ||| ||||||||||||| ||||| ||| |||| | || |
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| T |
29430511 |
aggagaataatcttatagttgatattaatataaaaatacaaacaaattcgtttgaacttgtagactgtcaagtccttaacaataatcat--tagatagtc |
29430608 |
T |
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| Q |
120 |
attcaaatatacaatcaatctaagcaatcataaaaacgaatatttactcaatcgattataatgaaaacaacatatacaaatgaatgaaaattcaaacaac |
219 |
Q |
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||||||| ||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
29430609 |
attcaaaattacaatcaatctaagcaatcagaaaatcgaatattcactcaatcgattataatgaaaacaacgtatacaaatgaatgaaaattcaaacaag |
29430708 |
T |
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| Q |
220 |
taaaccacagaggaggaact |
239 |
Q |
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|||||||||||||||||||| |
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| T |
29430709 |
taaaccacagaggaggaact |
29430728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 128 - 224
Target Start/End: Original strand, 29475935 - 29476031
Alignment:
| Q |
128 |
atacaatcaatctaagcaatcataaaaacgaatatttactcaatcgattataatgaaaacaacatatacaaatgaatgaaaattcaaacaactaaac |
224 |
Q |
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|||||||||||| ||||||||||||||| |||| | |||||||| |||| ||||||||||| ||||| ||||||| |||||||||||| ||||| |
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| T |
29475935 |
atacaatcaatccaagcaatcataaaaatcaatactcactcaatctattaaaatgaaaacaaaatataaaaatgaacataaattcaaacaagtaaac |
29476031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 144 - 223
Target Start/End: Original strand, 29459671 - 29459750
Alignment:
| Q |
144 |
caatcataaaaacgaatatttactcaatcgattataatgaaaacaacatatacaaatgaatgaaaattcaaacaactaaa |
223 |
Q |
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|||||||||||| |||||| |||||||| |||| ||||||||||||||||||||||||| |||||||||||| |||| |
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| T |
29459671 |
caatcataaaaataaatattcactcaatctattaaaatgaaaacaacatatacaaatgaacataaattcaaacaagtaaa |
29459750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 225
Target Start/End: Complemental strand, 29899831 - 29899724
Alignment:
| Q |
118 |
tcattcaaatatacaatcaatctaagcaatcataaaaacgaatatttactcaatcgattataatgaaaacaacatatacaaatgaatgaaaattcaaaca |
217 |
Q |
| |
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||||||||| ||||||| || |||||||||||||||| ||||| | |||||| |||||||||||||||||||| |||| ||| |||||||| || |
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| T |
29899831 |
tcattcaaaaatacaattaacataagcaatcataaaaaggaataatctctcaataacttataatgaaaacaacatatccaaacgaacataaattcaatca |
29899732 |
T |
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| Q |
218 |
actaaacc |
225 |
Q |
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| |||||| |
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| T |
29899731 |
agtaaacc |
29899724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 226
Target Start/End: Original strand, 53429628 - 53429826
Alignment:
| Q |
39 |
taataataatattaaaacaaaaacaaattcattagaacaaggagattgtcaagtccttat--aaataaccatgttagacaatcattcaaatatacaatca |
136 |
Q |
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|||||| ||| | |||||||||||| |||||| | ||| |||||||||||||||| ||| ||||||||| |||| | ||||||||||| ||||||| |
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| T |
53429628 |
taataacaatttaaaaacaaaaacatattcatcaaaaccaggagattgtcaagtctttaacaaaataaccaa--tagatagtcattcaaatacacaatca |
53429725 |
T |
|
| Q |
137 |
atctaagcaatcataaaaacga----atatttactcaatcgattataa--------tgaaaacaacatatacaaatgaatgaaaattcaaacaactaaac |
224 |
Q |
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| ||||||| ||||||||| | ||||| |||||||| | ||||| | | ||||||||||||||| |||||||||||||||||| ||||| |
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| T |
53429726 |
acctaagcagtcataaaaaaaattatatattcactcaatccactataactataagtttataacaacatatacaaa-gaatgaaaattcaaacaagtaaac |
53429824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 239
Target Start/End: Complemental strand, 3558172 - 3558076
Alignment:
| Q |
143 |
gcaatcataaaaacgaatatttactcaatcgattataatgaaaacaacatatacaaatgaatgaaaattcaaacaactaaaccacagaggaggaact |
239 |
Q |
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||||||||||||| ||||||| || ||||| |||| ||||||| |||||||||||| | |||||||||||| ||||| | ||| |||||||| |
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| T |
3558172 |
gcaatcataaaaatgaatattcacacaatctattaatatgaaaaatacatatacaaatttacataaattcaaacaagtaaacgatagaagaggaact |
3558076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 223
Target Start/End: Complemental strand, 10219438 - 10219353
Alignment:
| Q |
139 |
ctaagcaatcataaaaacgaatatttactc-aatcgattataatgaaaacaacatatacaaatgaatgaaaattcaaacaactaaa |
223 |
Q |
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||||||||||||||||| | ||||| | | |||| ||||| |||||||||||||||||||||||| |||||||||||| |||| |
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| T |
10219438 |
ctaagcaatcataaaaaagcatattcaaaccaatctattattatgaaaacaacatatacaaatgaacctaaattcaaacaagtaaa |
10219353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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