View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8999_high_4 (Length: 345)
Name: NF8999_high_4
Description: NF8999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8999_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 21 - 317
Target Start/End: Original strand, 42501468 - 42501764
Alignment:
| Q |
21 |
tagaggacgtcaacgatgacgacaaagacgaatctgaggacgaagaagatgacgaatcccctcaaggtagaaccgctattcctctttagtatcttatagt |
120 |
Q |
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| T |
42501468 |
tagaggacgacaacgatgacgacaaagacgaatctgaggacgaagaagatgacgaatcccctcaaggtagaaccgctattcctttttagtatcttatagt |
42501567 |
T |
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| Q |
121 |
attattaacatcgtttattgtcattctaaaaaattgattaatgtcaaagttactaattaccatgtagaacaaatataattactgacaatgttgttgttcc |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42501568 |
attattaacatcgtttattgtcattctaaaaaattgattaaggtcaaagttaccaattaccatgtagaacaaatataattactgacaatgttgttgttcc |
42501667 |
T |
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| Q |
221 |
atttgtactgtcttacgattttaaattttgagccttttgtatagtgtacgtgtaaaacttagttcttgtaaagtcggtgacgtacctgtaccacata |
317 |
Q |
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||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42501668 |
atttgtactatcttacaattttaaattttgagccttttgtatagtgtacgtgtaaaacttagttcttgtaaagtcggtgacgtacctgtaccacata |
42501764 |
T |
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