View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8999_high_5 (Length: 340)

Name: NF8999_high_5
Description: NF8999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8999_high_5
NF8999_high_5
[»] chr1 (14 HSPs)
chr1 (1-324)||(47771033-47771358)
chr1 (4-153)||(47775304-47775453)
chr1 (17-128)||(6502829-6502940)
chr1 (216-322)||(47774925-47775031)
chr1 (22-131)||(6525530-6525639)
chr1 (31-132)||(47743674-47743775)
chr1 (31-132)||(47758075-47758176)
chr1 (30-125)||(6510466-6510561)
chr1 (31-125)||(47700915-47701009)
chr1 (30-119)||(6514865-6514954)
chr1 (31-125)||(47711197-47711291)
chr1 (30-125)||(6497483-6497578)
chr1 (227-321)||(47698431-47698525)
chr1 (31-107)||(47627684-47627760)
[»] chr5 (6 HSPs)
chr5 (9-157)||(27368295-27368441)
chr5 (208-325)||(27368580-27368697)
chr5 (17-137)||(28828661-28828781)
chr5 (18-137)||(28859750-28859869)
chr5 (31-137)||(28854376-28854482)
chr5 (93-137)||(28874406-28874450)
[»] scaffold0341 (2 HSPs)
scaffold0341 (17-128)||(4508-4619)
scaffold0341 (30-125)||(12146-12241)
[»] chr8 (1 HSPs)
chr8 (31-132)||(11225253-11225354)
[»] chr4 (1 HSPs)
chr4 (58-131)||(31702568-31702641)
[»] chr6 (1 HSPs)
chr6 (221-264)||(21968190-21968233)
[»] chr3 (3 HSPs)
chr3 (287-325)||(3080480-3080518)
chr3 (287-325)||(3094917-3094955)
chr3 (287-325)||(4548013-4548051)
[»] chr7 (2 HSPs)
chr7 (31-107)||(19939325-19939401)
chr7 (31-107)||(19970464-19970540)


Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 47771358 - 47771033
Alignment:
Q  1 ccatgaccaatgtttgtactatttttatgaccacttataatctcaagaaccaataccccaaagctaaagacatccgattttaccgaaaattgtccatgca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47771358 ccatgaccaatgtttgtactatttttatgaccacttataatctcaagaaccaataccccaaagctaaagacatccgattttaccgaaaattgtccatgca 47771259  T
Q  101 ttgcatactcaggtgccatgtatccgctgcatgccaatatagacgagcttaattagt--nnnnnnnncaagaaattttacttgtagttgattcaacctaa 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||    
T  47771258 ttgcatactcaggtgccatgtatccgctgcatgccaatatagacgagcttaattagtaaaaaaaaaacaagaaattttacttgtagttgattcaacctaa 47771159  T
Q  199 cataaagtaatctcaagcatattttgaaacttactaagttccaacaattctatctgtatttccttcagattgatctataacaaacaatcttgccaatcca 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  47771158 cataaagtaatctcaagcatattttgaaacttactaagttccaacaatttgatctgtatttccttcagattgatctataacaaacaatcttgccaatcca 47771059  T
Q  299 aaatcagatatcttaggattcatctc 324  Q
    ||||||||||||||||||||||||||    
T  47771058 aaatcagatatcttaggattcatctc 47771033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 4 - 153
Target Start/End: Complemental strand, 47775453 - 47775304
Alignment:
Q  4 tgaccaatgtttgtactatttttatgaccacttataatctcaagaaccaataccccaaagctaaagacatccgattttaccgaaaattgtccatgcattg 103  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||    
T  47775453 tgaccaatgtttgtactatttttatgaccacttaaaatctcaagaaccaatactccgaaactaaagacatccgattttaccgaaaattgtccatgcattg 47775354  T
Q  104 catactcaggtgccatgtatccgctgcatgccaatatagacgagcttaat 153  Q
    |||||||||||||||| ||||| |||||| ||||||||||  ||||||||    
T  47775353 catactcaggtgccatatatccactgcataccaatatagagaagcttaat 47775304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 17 - 128
Target Start/End: Original strand, 6502829 - 6502940
Alignment:
Q  17 tactatttttatgaccacttataatctcaagaaccaataccccaaagctaaagacatccgattttaccgaaaattgtccatgcattgcatactcaggtgc 116  Q
    |||||||||||  |||||||| ||| |||||||||||||  ||||| || |||||||| |||||||||||||||||||| |||||| |||||||||||||    
T  6502829 tactatttttagcaccacttacaatttcaagaaccaatataccaaaactgaagacatctgattttaccgaaaattgtccgtgcattacatactcaggtgc 6502928  T
Q  117 catgtatccgct 128  Q
    ||| ||||||||    
T  6502929 catatatccgct 6502940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 216 - 322
Target Start/End: Complemental strand, 47775031 - 47774925
Alignment:
Q  216 catattttgaaacttactaagttccaacaattctatctgtatttccttcagattgatctataacaaacaatcttgccaatccaaaatcagatatcttagg 315  Q
    ||||||| ||||||||||| |||||||||||| ||  ||||||||||| || |||||| |||||||||||||| |||||||||||||| ||||| |||||    
T  47775031 catatttagaaacttactaggttccaacaattttacttgtatttccttgagtttgatcaataacaaacaatctcgccaatccaaaatcggatattttagg 47774932  T
Q  316 attcatc 322  Q
    |||||||    
T  47774931 attcatc 47774925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 22 - 131
Target Start/End: Complemental strand, 6525639 - 6525530
Alignment:
Q  22 tttttatgaccacttataatctcaagaaccaataccccaaagctaaagacatccgattttaccgaaaattgtccatgcattgcatactcaggtgccatgt 121  Q
    ||||| || ||||||||||||||||||| |||||| ||||| ||||| ||||| || || || |||||||||||||||||||||||||| |||||||| |    
T  6525639 tttttgtggccacttataatctcaagaatcaatacaccaaaactaaatacatctgacttcactgaaaattgtccatgcattgcatactccggtgccatat 6525540  T
Q  122 atccgctgca 131  Q
    |||| |||||    
T  6525539 atccactgca 6525530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 31 - 132
Target Start/End: Original strand, 47743674 - 47743775
Alignment:
Q  31 ccacttataatctcaagaaccaataccccaaagctaaagacatccgattttaccgaaaattgtccatgcattgcatactcaggtgccatgtatccgctgc 130  Q
    |||||||||||||| | ||| | ||| ||||| ||||| ||||| |||||||||||||||| ||||  ||||||||||||||| ||||| ||||| ||||    
T  47743674 ccacttataatctccaaaactagtacaccaaaactaaaaacatctgattttaccgaaaattctccaaacattgcatactcaggagccatatatccactgc 47743773  T
Q  131 at 132  Q
    ||    
T  47743774 at 47743775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 31 - 132
Target Start/End: Original strand, 47758075 - 47758176
Alignment:
Q  31 ccacttataatctcaagaaccaataccccaaagctaaagacatccgattttaccgaaaattgtccatgcattgcatactcaggtgccatgtatccgctgc 130  Q
    |||||||||||||| | ||| | ||| ||||| ||||| ||||| |||||||||||||||| ||||  ||||||||||||||| ||||| ||||| ||||    
T  47758075 ccacttataatctccaaaactagtacaccaaaactaaaaacatctgattttaccgaaaattctccaaacattgcatactcaggagccatatatccactgc 47758174  T
Q  131 at 132  Q
    ||    
T  47758175 at 47758176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 30 - 125
Target Start/End: Original strand, 6510466 - 6510561
Alignment:
Q  30 accacttataatctcaagaaccaataccccaaagctaaagacatccgattttaccgaaaattgtccatgcattgcatactcaggtgccatgtatcc 125  Q
    |||||||| ||| || | ||||||||  ||||| ||||||||||| |||||||| ||||| ||||| |||||| |||||||||||||||| |||||    
T  6510466 accacttacaatttctaaaaccaatataccaaaactaaagacatcggattttactgaaaactgtccttgcattacatactcaggtgccatatatcc 6510561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 31 - 125
Target Start/End: Original strand, 47700915 - 47701009
Alignment:
Q  31 ccacttataatctcaagaaccaataccccaaagctaaagacatccgattttaccgaaaattgtccatgcattgcatactcaggtgccatgtatcc 125  Q
    |||||||||||||| ||||| | ||| ||||| ||||| ||||||||||| || ||||||||||||  ||||||||| ||  ||||||| |||||    
T  47700915 ccacttataatctctagaactagtacgccaaaactaaaaacatccgatttgactgaaaattgtccaaacattgcatattcgagtgccatatatcc 47701009  T

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Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 119
Target Start/End: Original strand, 6514865 - 6514954
Alignment:
Q  30 accacttataatctcaagaaccaataccccaaagctaaagacatccgattttaccgaaaattgtccatgcattgcatactcaggtgccat 119  Q
    |||||||| ||| |||||||| ||||  ||||| ||||||||||| ||||||   ||||||||||||||| | |||||||| ||||||||    
T  6514865 accacttacaatttcaagaactaatataccaaaactaaagacatctgattttgttgaaaattgtccatgcctcgcatactctggtgccat 6514954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 125
Target Start/End: Original strand, 47711197 - 47711291
Alignment:
Q  31 ccacttataatctcaagaaccaataccccaaagctaaagacatccgattttaccgaaaattgtccatgcattgcatactcaggtgccatgtatcc 125  Q
    |||||||||||||| | ||| ||||| ||||| ||||| ||||| |||||||||||||||| ||||  | || ||||||| || ||||| |||||    
T  47711197 ccacttataatctccaaaactaatactccaaaactaaaaacatctgattttaccgaaaattctccaaaccttacatactcgggagccatatatcc 47711291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 30 - 125
Target Start/End: Original strand, 6497483 - 6497578
Alignment:
Q  30 accacttataatctcaagaaccaataccccaaagctaaagacatccgattttaccgaaaattgtccatgcattgcatactcaggtgccatgtatcc 125  Q
    ||||||||  || |||||||||||||  || || || || |||||||| || || ||||||||||| ||||| ||||| ||||||||||| |||||    
T  6497483 accacttacgatttcaagaaccaatataccgaaactgaatacatccgacttcactgaaaattgtccgtgcatagcatattcaggtgccatatatcc 6497578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 321
Target Start/End: Complemental strand, 47698525 - 47698431
Alignment:
Q  227 acttactaagttccaacaattctatctgtatttccttcagattgatctataacaaacaatcttgccaatccaaaatcagatatcttaggattcat 321  Q
    |||||||| |||||||||||||||| |||| |||||  |  |||||||| | | | || ||||||||  || ||||||||||| |||||||||||    
T  47698525 acttactatgttccaacaattctatttgtacttcctcgatcttgatctagagccaccattcttgccatgccgaaatcagatattttaggattcat 47698431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 107
Target Start/End: Complemental strand, 47627760 - 47627684
Alignment:
Q  31 ccacttataatctcaagaaccaataccccaaagctaaagacatccgattttaccgaaaattgtccatgcattgcata 107  Q
    ||||| |||||||| |||||||  || ||||| ||||| ||||| || ||  | |||||||||||||||||||||||    
T  47627760 ccactaataatctcgagaaccatcactccaaaactaaaaacatcagacttctctgaaaattgtccatgcattgcata 47627684  T

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Target: chr5 (Bit Score: 86; Significance: 4e-41; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 9 - 157
Target Start/End: Original strand, 27368295 - 27368441
Alignment:
Q  9 aatgtttgtactatttttatgaccacttataatctcaagaaccaataccccaaagctaaagacatccgattttaccgaaaattgtccatgcattgcatac 108  Q
    |||||||| ||||||||||||||||||||||||||||||||  ||||| ||||| ||| ||||||| |||||||||||||||| ||||||||| ||||||    
T  27368295 aatgtttgcactatttttatgaccacttataatctcaagaagtaatactccaaaactatagacatctgattttaccgaaaattctccatgcatcgcatac 27368394  T
Q  109 tcaggtgccatgtatccgctgcatgccaatatagacgagcttaattagt 157  Q
    ||||||||||| ||||| ||||||| ||  |||||| ||||||||||||    
T  27368395 tcaggtgccatatatccactgcatgtca--atagacaagcttaattagt 27368441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 208 - 325
Target Start/End: Original strand, 27368580 - 27368697
Alignment:
Q  208 atctcaagcatattttgaaacttactaagttccaacaattctatctgtatttccttcagattgatctataacaaacaatcttgccaatccaaaatcagat 307  Q
    ||||||||| ||||||||||||||||| |||||||| ||||||| |||| ||||||||| |||| | ||||||||   |||||||||||||||||| |||    
T  27368580 atctcaagcttattttgaaacttactaggttccaacgattctatttgtacttccttcagtttgaccgataacaaatcgtcttgccaatccaaaatcggat 27368679  T
Q  308 atcttaggattcatctct 325  Q
    ||||||||||||||||||    
T  27368680 atcttaggattcatctct 27368697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 17 - 137
Target Start/End: Original strand, 28828661 - 28828781
Alignment:
Q  17 tactatttttatgaccacttataatctcaagaaccaataccccaaagctaaagacatccgattttaccgaaaattgtccatgcattgcatactcaggtgc 116  Q
    ||||||| || || |||||||||||||||||||| | ||| ||||| | ||||||||| ||||| |||||||||| |||||||||| |||||||||||||    
T  28828661 tactattcttttggccacttataatctcaagaactagtacaccaaaaccaaagacatctgatttcaccgaaaattctccatgcattacatactcaggtgc 28828760  T
Q  117 catgtatccgctgcatgccaa 137  Q
    ||||||||| || ||||||||    
T  28828761 catgtatccactacatgccaa 28828781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 28859750 - 28859869
Alignment:
Q  18 actatttttatgaccacttataatctcaagaaccaataccccaaagctaaagacatccgattttaccgaaaattgtccatgcattgcatactcaggtgcc 117  Q
    |||||| || || ||||||||||||||||||||||  || ||||| ||||||||||| ||||| || ||||||| |||||||||| ||||||||||||||    
T  28859750 actattcttttggccacttataatctcaagaaccagaacaccaaaactaaagacatctgatttcactgaaaattctccatgcattacatactcaggtgcc 28859849  T
Q  118 atgtatccgctgcatgccaa 137  Q
    || |||||||| ||||||||    
T  28859850 atatatccgctacatgccaa 28859869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 31 - 137
Target Start/End: Original strand, 28854376 - 28854482
Alignment:
Q  31 ccacttataatctcaagaaccaataccccaaagctaaagacatccgattttaccgaaaattgtccatgcattgcatactcaggtgccatgtatccgctgc 130  Q
    |||||||||||||||||||| | ||| ||||| || |||||||| |||||||| ||||||| |||||||||| |||||||||||||||| || ||||| |    
T  28854376 ccacttataatctcaagaactagtacaccaaaactgaagacatctgattttactgaaaattctccatgcattacatactcaggtgccatatacccgctac 28854475  T
Q  131 atgccaa 137  Q
    |||||||    
T  28854476 atgccaa 28854482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 137
Target Start/End: Original strand, 28874406 - 28874450
Alignment:
Q  93 tccatgcattgcatactcaggtgccatgtatccgctgcatgccaa 137  Q
    |||||||||| |||||||||||||||| |||||||| ||||||||    
T  28874406 tccatgcattacatactcaggtgccatatatccgctacatgccaa 28874450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 17 - 128
Target Start/End: Original strand, 4508 - 4619
Alignment:
Q  17 tactatttttatgaccacttataatctcaagaaccaataccccaaagctaaagacatccgattttaccgaaaattgtccatgcattgcatactcaggtgc 116  Q
    |||||||||||  |||||||| ||| |||||||||||||  ||||| || |||||||| |||||||||||||||||||| |||||| |||||||||||||    
T  4508 tactatttttagcaccacttacaatttcaagaaccaatataccaaaactgaagacatctgattttaccgaaaattgtccgtgcattacatactcaggtgc 4607  T
Q  117 catgtatccgct 128  Q
    ||| ||||||||    
T  4608 catatatccgct 4619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 30 - 125
Target Start/End: Original strand, 12146 - 12241
Alignment:
Q  30 accacttataatctcaagaaccaataccccaaagctaaagacatccgattttaccgaaaattgtccatgcattgcatactcaggtgccatgtatcc 125  Q
    |||||||| ||| || | ||||||||  ||||| ||||||||||| |||||||| ||||| ||||| |||||| |||||||||||||||| |||||    
T  12146 accacttacaatttctaaaaccaatataccaaaactaaagacatcggattttactgaaaactgtccttgcattacatactcaggtgccatatatcc 12241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 31 - 132
Target Start/End: Complemental strand, 11225354 - 11225253
Alignment:
Q  31 ccacttataatctcaagaaccaataccccaaagctaaagacatccgattttaccgaaaattgtccatgcattgcatactcaggtgccatgtatccgctgc 130  Q
    |||||||||||||| | ||| | ||| ||||| ||||| ||||| |||||||||||||||| ||||  ||||||||||||||| ||||| ||||| ||||    
T  11225354 ccacttataatctccaaaactagtacaccaaaactaaaaacatctgattttaccgaaaattctccaaacattgcatactcaggagccatatatccactgc 11225255  T
Q  131 at 132  Q
    ||    
T  11225254 at 11225253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 58 - 131
Target Start/End: Complemental strand, 31702641 - 31702568
Alignment:
Q  58 ccaaagctaaagacatccgattttaccgaaaattgtccatgcattgcatactcaggtgccatgtatccgctgca 131  Q
    |||||||| || ||||||||||| || |||||||||||||  || |||||||| ||||||||||| || |||||    
T  31702641 ccaaagctgaaaacatccgatttcacggaaaattgtccatcaatagcatactctggtgccatgtacccactgca 31702568  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 221 - 264
Target Start/End: Original strand, 21968190 - 21968233
Alignment:
Q  221 tttgaaacttactaagttccaacaattctatctgtatttccttc 264  Q
    |||||||||||||| |||||||||||||||| |||| |||||||    
T  21968190 tttgaaacttactatgttccaacaattctatttgtacttccttc 21968233  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 325
Target Start/End: Complemental strand, 3080518 - 3080480
Alignment:
Q  287 cttgccaatccaaaatcagatatcttaggattcatctct 325  Q
    ||||||||||||||||||||||| || ||||||||||||    
T  3080518 cttgccaatccaaaatcagatatttttggattcatctct 3080480  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 325
Target Start/End: Complemental strand, 3094955 - 3094917
Alignment:
Q  287 cttgccaatccaaaatcagatatcttaggattcatctct 325  Q
    ||||||||||||||||||||||| || ||||||||||||    
T  3094955 cttgccaatccaaaatcagatatttttggattcatctct 3094917  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 325
Target Start/End: Original strand, 4548013 - 4548051
Alignment:
Q  287 cttgccaatccaaaatcagatatcttaggattcatctct 325  Q
    ||||||||||||||||||||||| || ||||||||||||    
T  4548013 cttgccaatccaaaatcagatatttttggattcatctct 4548051  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 107
Target Start/End: Complemental strand, 19939401 - 19939325
Alignment:
Q  31 ccacttataatctcaagaaccaataccccaaagctaaagacatccgattttaccgaaaattgtccatgcattgcata 107  Q
    ||||| |||||||||||||  || || ||||||||||||||||| |||||  | |||||  |||| |||||||||||    
T  19939401 ccactaataatctcaagaagtaaaactccaaagctaaagacatcagatttatcagaaaacagtccttgcattgcata 19939325  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 107
Target Start/End: Complemental strand, 19970540 - 19970464
Alignment:
Q  31 ccacttataatctcaagaaccaataccccaaagctaaagacatccgattttaccgaaaattgtccatgcattgcata 107  Q
    ||||| |||||||||||||  || || ||||||||||||||||| |||||  | |||||  |||| |||||||||||    
T  19970540 ccactaataatctcaagaagtaaaactccaaagctaaagacatcagatttatcagaaaacagtccttgcattgcata 19970464  T

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