View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8999_high_8 (Length: 245)
Name: NF8999_high_8
Description: NF8999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8999_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 18 - 231
Target Start/End: Complemental strand, 31051149 - 31050936
Alignment:
| Q |
18 |
attatctgctatcgatcaagccattagtgatggtgttgatataatctcagtttctgttggaggccgacctagttcaaattttgaagaaatttttaccgat |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
31051149 |
attatctgctatcgatcaagccattagtgatggtgttgatataatctcagtttctgttggaggccgatctagttcaaattttgaagaaatttttaccgat |
31051050 |
T |
|
| Q |
118 |
gaaatttcaataggtgcatttcaggcattcactaaaaacatattattagttgcatctgctggaaatggtggaccaacccctggaagtgttactaatgttg |
217 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31051049 |
gaaatttcaataggtgcatttcaggcattcgctaaaaacatattattagttgcatctgctggaaatggtggaccaacccctggaagtgttactaatgttg |
31050950 |
T |
|
| Q |
218 |
ctccttgggtgttc |
231 |
Q |
| |
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|||||||||||||| |
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| T |
31050949 |
ctccttgggtgttc |
31050936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 18 - 227
Target Start/End: Complemental strand, 31063614 - 31063405
Alignment:
| Q |
18 |
attatctgctatcgatcaagccattagtgatggtgttgatataatctcagtttctgttggaggccgacctagttcaaattttgaagaaatttttaccgat |
117 |
Q |
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|||||||||||| |||||||| ||| |||||||||||| ||||| || ||||||| |||||||| | ||||| |||||| |||||||||||||||||| |
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| T |
31063614 |
attatctgctattgatcaagcaattgatgatggtgttgacataatatctgtttctgctggaggcccatctagtacaaattctgaagaaatttttaccgac |
31063515 |
T |
|
| Q |
118 |
gaaatttcaataggtgcatttcaggcattcactaaaaacatattattagttgcatctgctggaaatggtggaccaacccctggaagtgttactaatgttg |
217 |
Q |
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|| ||||||||||||||||||| ||| | ||| ||| |||||||||||||||||||| ||||||| ||||| ||||||||||||||| |||||||| |
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| T |
31063514 |
gaggtttcaataggtgcatttcatgcacttgctagaaatatattattagttgcatctgcgggaaatgaaggacctacccctggaagtgttgttaatgttg |
31063415 |
T |
|
| Q |
218 |
ctccttgggt |
227 |
Q |
| |
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|||||||||| |
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| T |
31063414 |
ctccttgggt |
31063405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 18 - 231
Target Start/End: Complemental strand, 31108701 - 31108488
Alignment:
| Q |
18 |
attatctgctatcgatcaagccattagtgatggtgttgatataatctcagtttctgttggaggccgacctagttcaaattttgaagaaatttttaccgat |
117 |
Q |
| |
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|||||||||||| |||||||| ||| |||||||||||| ||||| || ||||||| |||||||| | ||||| |||||| ||||||||||||||| || |
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| T |
31108701 |
attatctgctattgatcaagcaattgatgatggtgttgacataatatctgtttctgctggaggcccatctagtacaaattctgaagaaatttttactgac |
31108602 |
T |
|
| Q |
118 |
gaaatttcaataggtgcatttcaggcattcactaaaaacatattattagttgcatctgctggaaatggtggaccaacccctggaagtgttactaatgttg |
217 |
Q |
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|| |||||||||||||||||||| ||| | ||| ||| |||||||||||||||||||| ||||||| ||||| ||||||||||||||| |||||||| |
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| T |
31108601 |
gagatttcaataggtgcatttcatgcacttgctagaaatatattattagttgcatctgcgggaaatgaaggacctacccctggaagtgttgttaatgttg |
31108502 |
T |
|
| Q |
218 |
ctccttgggtgttc |
231 |
Q |
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|||| ||||||||| |
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| T |
31108501 |
ctccatgggtgttc |
31108488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 106 - 231
Target Start/End: Complemental strand, 31146363 - 31146238
Alignment:
| Q |
106 |
atttttaccgatgaaatttcaataggtgcatttcaggcattcactaaaaacatattattagttgcatctgctggaaatggtggaccaacccctggaagtg |
205 |
Q |
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|||||||| ||||| |||||||||||||||||||| ||| | ||| ||| ||||||||||||||||| |||||||||| ||||| ||||||||||||| |
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| T |
31146363 |
atttttactgatgagatttcaataggtgcatttcatgcacttgctagaaatatattattagttgcatcggctggaaatgaaggacctacccctggaagtg |
31146264 |
T |
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| Q |
206 |
ttactaatgttgctccttgggtgttc |
231 |
Q |
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|||||||||||||||| ||||||||| |
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| T |
31146263 |
ttactaatgttgctccatgggtgttc |
31146238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 106 - 231
Target Start/End: Complemental strand, 31164189 - 31164064
Alignment:
| Q |
106 |
atttttaccgatgaaatttcaataggtgcatttcaggcattcactaaaaacatattattagttgcatctgctggaaatggtggaccaacccctggaagtg |
205 |
Q |
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|||||||| ||||| |||||||||||||||||||| ||| | ||| ||| ||||||||||||||||| |||||||||| ||||| ||||||||||||| |
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| T |
31164189 |
atttttactgatgagatttcaataggtgcatttcatgcacttgctagaaatatattattagttgcatcggctggaaatgaaggacctacccctggaagtg |
31164090 |
T |
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| Q |
206 |
ttactaatgttgctccttgggtgttc |
231 |
Q |
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|||||||||||||||| ||||||||| |
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| T |
31164089 |
ttactaatgttgctccatgggtgttc |
31164064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 31201554 - 31201607
Alignment:
| Q |
18 |
attatctgctatcgatcaagccattagtgatggtgttgatataatctcagtttc |
71 |
Q |
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|||| ||||||| |||||||||||||||||||||||||||||||||||| |||| |
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| T |
31201554 |
attagctgctattgatcaagccattagtgatggtgttgatataatctcactttc |
31201607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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