View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8999_high_9 (Length: 234)
Name: NF8999_high_9
Description: NF8999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8999_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 13 - 227
Target Start/End: Complemental strand, 43638367 - 43638153
Alignment:
| Q |
13 |
tggtggtcgagttgagcttgcaaaagcgtactacaaggcactaactgattccgtgaggaaacatttcaaaggcaatggtgtcatttccagtatgcaacag |
112 |
Q |
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| T |
43638367 |
tggtggtcgagttgagcttgcaaaagcgtactacaaggcactaactgattccgtgaggaaacatttcaaaggcaatggtgtcatttccagtatgcaacaa |
43638268 |
T |
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| Q |
113 |
tgcaacgatttcatgttccttggtacagaaaccatttcacttggacgagttggtacgtattttaaactttttcactcgaagtcaatgtgttgaacattaa |
212 |
Q |
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| T |
43638267 |
tgcaacgatttcatgttccttggtacagaaaccatttcacttggacgagttggtatgtattttaaactttttcactcgaagtcaatgtgttgaacattaa |
43638168 |
T |
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| Q |
213 |
attccgtgactgtgt |
227 |
Q |
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| T |
43638167 |
attccgtgtctgtgt |
43638153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 159
Target Start/End: Complemental strand, 34697394 - 34697243
Alignment:
| Q |
8 |
gagtttggtggtcgagttgagcttgcaaaagcgtactacaaggcactaactgattccgtgaggaaacatttcaaaggcaatggtgtcatttccagtatgc |
107 |
Q |
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| T |
34697394 |
gagtatggtggacgtgttgagcttgctaaagcctattacaaagcactgacctcatcagtgaagaaacatttcaatggcaatggagttattgccagcatgg |
34697295 |
T |
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| Q |
108 |
aacagtgcaacgatttcatgttccttggtacagaaaccatttcacttggacg |
159 |
Q |
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| T |
34697294 |
agcattgcaacgacttctttctccttggcacagaagccatttcccttggacg |
34697243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 167
Target Start/End: Original strand, 488438 - 488534
Alignment:
| Q |
71 |
aaacatttcaaaggcaatggtgtcatttccagtatgcaacagtgcaacgatttcatgttccttggtacagaaaccatttcacttggacgagttggta |
167 |
Q |
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| T |
488438 |
aaacatttcaatggtaatggtgtcattgctagcatggaacattgcaatgatttcatgttgcttggaactgaagccatatcccttggtcgtgttggta |
488534 |
T |
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