View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8999_low_10 (Length: 371)
Name: NF8999_low_10
Description: NF8999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8999_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Complemental strand, 10566880 - 10566517
Alignment:
| Q |
1 |
aaagtaaatttgtagtgatgtccactgatgctatggataaggattcaaataatagacattctgtagacgttcatgacgaagcttacaagagacagttcct |
100 |
Q |
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| T |
10566880 |
aaagtaaatttgtagtgatgtccactgatgctatggataaggattcaaataatagacattctgtagatgttcatgacgaagcttacaagagacagttcct |
10566781 |
T |
|
| Q |
101 |
tgaaggcaatgctgattcttcttttaactttctattgaatcaaagctatgccagtacgtcttttggtgagctactgcattctggtttggaagattcagag |
200 |
Q |
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| T |
10566780 |
tgaaggcaatgctgattcttcttttaactttctattgaatcaaagctatgccagtacgtcttttggtgagctactgcattctggtttggaagattcagag |
10566681 |
T |
|
| Q |
201 |
gtggaacagtataaatatttagaaacaaataatgatgcatgcttaaacaacacacataaatcacttgatatgtcctggtttccagaatcaagatttgttt |
300 |
Q |
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| T |
10566680 |
gtggaacagtataaatatttagaaacaaataatgatacatgcttaaacaacacatataaatcacttgatatgtcctggtttccagaatcaagatttgttt |
10566581 |
T |
|
| Q |
301 |
ccgagactgcaattcaaaacagaacagaaacattgtctacagttgtgtcttctgatgtccatct |
364 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
10566580 |
ccgagactgcaattcaaaacagaacagaaacattgtctacagttgtgtcttctggtggccatct |
10566517 |
T |
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