View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8999_low_17 (Length: 328)
Name: NF8999_low_17
Description: NF8999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8999_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 278; Significance: 1e-155; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 13 - 314
Target Start/End: Original strand, 4367818 - 4368119
Alignment:
| Q |
13 |
agcagagaccacacccacttccaaccttgcgaaccttctgccgaactgaaatttgacagtaagcaagatgctaaactgatagacaaacttcctaattcag |
112 |
Q |
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|||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4367818 |
agcagacaccacacccgcttccaaccttgcgaaccttctgcggaactgaaatttgacagtaagcaagatgctaaactgatagacaaacttcctaattcag |
4367917 |
T |
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| Q |
113 |
catcagaccaaacacacacatccatatcttctccactgcagaacgaagaatagctatcatgttcaaaatacaagattttaaagaaagataaacatttata |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
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| T |
4367918 |
catcagaccaaacacacacatccatatcttctccactgcagaacgaagaatagctatcatgttcaaagtacaagagtttaaagaaagataaacatttata |
4368017 |
T |
|
| Q |
213 |
caaaacagaaccaggatgcaggggaaaaaagaaacaatgatttaaatatgtaaatgtactagacagattaagctgtttataatacaatgaatgcttaaaa |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
4368018 |
caaaacagaaccaggatgcaggggaaaaaagaaacaatgatttaaatatgtaaatgtactaaacagattaagctgtttataatacaatgaatgcttaaaa |
4368117 |
T |
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| Q |
313 |
ct |
314 |
Q |
| |
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|| |
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| T |
4368118 |
ct |
4368119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 38 - 131
Target Start/End: Original strand, 4363407 - 4363500
Alignment:
| Q |
38 |
cttgcgaaccttctgccgaactgaaatttgacagtaagcaagatgctaaactgatagacaaacttcctaattcagcatcagaccaaacacacac |
131 |
Q |
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| T |
4363407 |
cttgcgaaccttctgccgaactgacatttgacagtaaccaagatgctaaactgatatacaaacttcctaattcagcatcaaaccaaacacacac |
4363500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 211 - 314
Target Start/End: Original strand, 4363586 - 4363690
Alignment:
| Q |
211 |
tacaaaacagaaccaggatgcaggggaaaaaag-aaacaatgatttaaatatgtaaatgtactagacagattaagctgtttataatacaatgaatgctta |
309 |
Q |
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|||| |||||||||||||||||| |||||||| |||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||| || |
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| T |
4363586 |
tacataacagaaccaggatgcagtggaaaaaaacaaacaatgatttaaatatataaatgtagtaaacagattaagctgtttataatacaatgaatgcata |
4363685 |
T |
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| Q |
310 |
aaact |
314 |
Q |
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||||| |
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| T |
4363686 |
aaact |
4363690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 211 - 306
Target Start/End: Original strand, 4358274 - 4358369
Alignment:
| Q |
211 |
tacaaaacagaaccaggatgcaggggaaaaaagaaacaatgatttaaatatgtaaatgtactagacagattaagctgtttataatacaatgaatgc |
306 |
Q |
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| T |
4358274 |
tacaaaacatgactaggatgcaggcgaaaaaagaaacattgatttaaatatataaatgtactaaccagattaagctgtttataatacaatgaatgc |
4358369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 110 - 228
Target Start/End: Original strand, 4358146 - 4358261
Alignment:
| Q |
110 |
cagcatcagaccaaacacacacatccatatcttctccactgcagaacgaagaatagctatcat---gttcaaaatacaagattttaaagaaagataaaca |
206 |
Q |
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||||||||||||||| | ||||||||||||| ||| | |||| ||| |||||||||||| |||||||||| ||| |||||||||||| ||||| |
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| T |
4358146 |
cagcatcagaccaaaaatacacatccatatcgtct-----ggagaa-gaaaaatagctatcatcttgttcaaaatatcagagtttaaagaaagagaaaca |
4358239 |
T |
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| Q |
207 |
tttatacaaaacagaaccagga |
228 |
Q |
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|| | ||||||||||||||||| |
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| T |
4358240 |
ttcaaacaaaacagaaccagga |
4358261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 38 - 152
Target Start/End: Complemental strand, 33807136 - 33807021
Alignment:
| Q |
38 |
cttgcgaaccttctgccgaactgaaatttgacagtaagcaagatgctaaactgatagacaaacttcctaattcagcatcagaccaaacaca--cacatcc |
135 |
Q |
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|||| ||||||||||| ||||||||||| |||| ||| ||||| | |||||||| |||||| || ||||||||||||| | |||||||| ||||| | |
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| T |
33807136 |
cttgtgaaccttctgctaaactgaaatttaacagaaag-aagatattgaactgataaacaaacctcgtaattcagcatcaaatcaaacacacacacattc |
33807038 |
T |
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| Q |
136 |
atatcttctccactgca |
152 |
Q |
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||||||||||||||||| |
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| T |
33807037 |
atatcttctccactgca |
33807021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 152
Target Start/End: Complemental strand, 19094667 - 19094629
Alignment:
| Q |
114 |
atcagaccaaacacacacatccatatcttctccactgca |
152 |
Q |
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| T |
19094667 |
atcagaccaaacacacacattcatatcttctccactgca |
19094629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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