View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8999_low_18 (Length: 304)

Name: NF8999_low_18
Description: NF8999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8999_low_18
NF8999_low_18
[»] chr8 (1 HSPs)
chr8 (20-304)||(41026982-41027268)


Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 20 - 304
Target Start/End: Original strand, 41026982 - 41027268
Alignment:
Q  20 gtcaattgaccttattgagagtaatattatgaatgaggagacgagaagaaagtctcaggttccatttcacatgtagaactattggttactaaacaagggg 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  41026982 gtcaattgaccttattgagagtaatattatgaatgaggagacgagaagaaagtctcaggttccatttcacatgtagaattattggttactaaacaagggg 41027081  T
Q  120 gacaaacaagaaccaatatacaagtaa--gagatnnnnnnnnnntcaatttcaaatcaggtacaaagttgttgataatgtgataaaatgcggtggccttc 217  Q
    | |||||||||||||||||||||||||  |||||          |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  41027082 gccaaacaagaaccaatatacaagtaatagagataaaaaaaaaatcaatttcaaatcaggtacaaagttgttgatagtgtgataaaatgtggtggccttc 41027181  T
Q  218 gataagataatttggagatgtccaatgacacaaagttaactctcaaatatgtgagcatgtttgagacattcaattgaatttaatttt 304  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41027182 cataagataatttggagatgtccaatgacacaaagttaactctcaaatatgtgagcatgtttgagacattcaattgaatttaatttt 41027268  T

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