View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8999_low_19 (Length: 274)
Name: NF8999_low_19
Description: NF8999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8999_low_19 |
 | |
|
| [»] chr7 (6 HSPs) |
| |
|
| [»] chr5 (7 HSPs) |
| |
|
| [»] chr1 (3 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
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|
Alignment Details
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 13 - 274
Target Start/End: Original strand, 5315113 - 5315374
Alignment:
| Q |
13 |
tggtggtggtagaggtacctagactagggaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattactcacttaatcgtttg |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5315113 |
tggtggtggtagaggtacctagactagggaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattactcacttaatcgtttg |
5315212 |
T |
|
| Q |
113 |
caccacaagtggtgttgacatgcctggagcagattatcaactcaccaaactattaggtcttcgcccatatgtgaaaagatacatgatgtaccaacaaggg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5315213 |
caccacaagtggtgttgacatgcctggagcagattatcaactcaccaaactattaggtcttcgcccatatgtgaaaagatacatgatgtaccaacaaggg |
5315312 |
T |
|
| Q |
213 |
tgctttgcaggtggcacggtgctccgtttggctaaagatttggctgagaacaacaaaggtgc |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5315313 |
tgctttgcaggtggcacggtgctccgtttggctaaagatttggctgagaacaacaaaggtgc |
5315374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 13 - 274
Target Start/End: Complemental strand, 5289817 - 5289556
Alignment:
| Q |
13 |
tggtggtggtagaggtacctagactagggaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattactcacttaatcgtttg |
112 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5289817 |
tggtggtggtagaggtacctagactaggaaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattactcacttaatcgtttg |
5289718 |
T |
|
| Q |
113 |
caccacaagtggtgttgacatgcctggagcagattatcaactcaccaaactattaggtcttcgcccatatgtgaaaagatacatgatgtaccaacaaggg |
212 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||||||||||| ||||| || |||||||| |||||||||||||| || |||||||||||||||||| |
|
|
| T |
5289717 |
caccacaagtggtgtagacatgcctggagccgattatcaactcacaaaactcttgggtcttcgtccatatgtgaaaaggtatatgatgtaccaacaaggg |
5289618 |
T |
|
| Q |
213 |
tgctttgcaggtggcacggtgctccgtttggctaaagatttggctgagaacaacaaaggtgc |
274 |
Q |
| |
|
|| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
5289617 |
tgttttgcaggtggcacggtgcttcgtttggccaaagatttggctgagaacaacaaaggtgc |
5289556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 13 - 274
Target Start/End: Original strand, 5284310 - 5284571
Alignment:
| Q |
13 |
tggtggtggtagaggtacctagactagggaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattactcacttaatcgtttg |
112 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
5284310 |
tggtggtggtagaggtacctagactaggaaaggaggctgcagtgaaggctataaaagaatggggccaaccaaagtcaaagattactcacttaatcgtttg |
5284409 |
T |
|
| Q |
113 |
caccacaagtggtgttgacatgcctggagcagattatcaactcaccaaactattaggtcttcgcccatatgtgaaaagatacatgatgtaccaacaaggg |
212 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
5284410 |
caccacaagtggtgtagacatgcctggagccgattatcaactcaccaaactcttgggtcttcgcccatatgtgaaaaggtacatgatgtaccaacaaggg |
5284509 |
T |
|
| Q |
213 |
tgctttgcaggtggcacggtgctccgtttggctaaagatttggctgagaacaacaaaggtgc |
274 |
Q |
| |
|
|| ||||||||||| ||||| || |||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
5284510 |
tgttttgcaggtggtacggtacttcgtttggccaaagatttagctgagaacaacaaaggtgc |
5284571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 13 - 274
Target Start/End: Original strand, 5302498 - 5302759
Alignment:
| Q |
13 |
tggtggtggtagaggtacctagactagggaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattactcacttaatcgtttg |
112 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5302498 |
tggtggtggtagaggtacctagactaggaaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattactcacttaatcgtttg |
5302597 |
T |
|
| Q |
113 |
caccacaagtggtgttgacatgcctggagcagattatcaactcaccaaactattaggtcttcgcccatatgtgaaaagatacatgatgtaccaacaaggg |
212 |
Q |
| |
|
||||||||||||||| |||||||| | ||| |||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
5302598 |
caccacaagtggtgtagacatgcccgaagctgattatcaactcaccaaactcttgggtcttcgcccatatgtgaaaaggtacatgatgtaccaacaaggg |
5302697 |
T |
|
| Q |
213 |
tgctttgcaggtggcacggtgctccgtttggctaaagatttggctgagaacaacaaaggtgc |
274 |
Q |
| |
|
|| |||||||||||||||||||| |||||||| |||||| | |||||||||||||||||||| |
|
|
| T |
5302698 |
tgttttgcaggtggcacggtgcttcgtttggccaaagatctagctgagaacaacaaaggtgc |
5302759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 13 - 274
Target Start/End: Original strand, 5310399 - 5310660
Alignment:
| Q |
13 |
tggtggtggtagaggtacctagactagggaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattactcacttaatcgtttg |
112 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5310399 |
tggtggtggtagaggtacctagactaggaaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattactcacttaatcgtttg |
5310498 |
T |
|
| Q |
113 |
caccacaagtggtgttgacatgcctggagcagattatcaactcaccaaactattaggtcttcgcccatatgtgaaaagatacatgatgtaccaacaaggg |
212 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||||||||||| ||||| || || ||||| |||||||||||||| || |||||||||||||||||| |
|
|
| T |
5310499 |
caccacaagtggtgtagacatgcctggagctgattatcaactcacaaaactcttgggccttcgtccatatgtgaaaaggtatatgatgtaccaacaaggg |
5310598 |
T |
|
| Q |
213 |
tgctttgcaggtggcacggtgctccgtttggctaaagatttggctgagaacaacaaaggtgc |
274 |
Q |
| |
|
|| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
5310599 |
tgttttgcaggtggcacggtgcttcgtttggccaaagatttggctgagaacaacaaaggtgc |
5310660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 13 - 274
Target Start/End: Complemental strand, 46707108 - 46706847
Alignment:
| Q |
13 |
tggtggtggtagaggtacctagactagggaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattactcacttaatcgtttg |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
46707108 |
tggtggtggtagaggtacctagactagggaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattacccacttaatcgtttg |
46707009 |
T |
|
| Q |
113 |
caccacaagtggtgttgacatgcctggagcagattatcaactcaccaaactattaggtcttcgcccatatgtgaaaagatacatgatgtaccaacaaggg |
212 |
Q |
| |
|
||| || |||||||| |||||||||||||| ||||| |||||||| ||||| || ||||||||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
46707008 |
cactactagtggtgtagacatgcctggagctgattaccaactcacaaaactcttcggtcttcgcccatatgtgaaaaggtatatgatgtaccaacaaggt |
46706909 |
T |
|
| Q |
213 |
tgctttgcaggtggcacggtgctccgtttggctaaagatttggctgagaacaacaaaggtgc |
274 |
Q |
| |
|
||||||||||| ||||||| ||| ||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
46706908 |
tgctttgcaggaggcacggggcttcgtttggctaacgatttggctgagaacaacaaaggtgc |
46706847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 13 - 274
Target Start/End: Original strand, 1492170 - 1492431
Alignment:
| Q |
13 |
tggtggtggtagaggtacctagactagggaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattactcacttaatcgtttg |
112 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1492170 |
tggtggtggtagaagtacctagactagggaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattactcacttaatcgtttg |
1492269 |
T |
|
| Q |
113 |
caccacaagtggtgttgacatgcctggagcagattatcaactcaccaaactattaggtcttcgcccatatgtgaaaagatacatgatgtaccaacaaggg |
212 |
Q |
| |
|
||||||||| ||||| ||||||||||| || |||||||||||||| ||||| ||||||||||| |||||||| |||||||||||||||||||| ||||| |
|
|
| T |
1492270 |
caccacaagcggtgtagacatgcctggggccgattatcaactcactaaactcttaggtcttcgtccatatgtaaaaagatacatgatgtaccagcaaggt |
1492369 |
T |
|
| Q |
213 |
tgctttgcaggtggcacggtgctccgtttggctaaagatttggctgagaacaacaaaggtgc |
274 |
Q |
| |
|
|| ||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
1492370 |
tgttttgcaggtggcacggtacttcgtttggctaaggatttggctgagaacaacaaaggtgc |
1492431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 13 - 274
Target Start/End: Original strand, 1504979 - 1505240
Alignment:
| Q |
13 |
tggtggtggtagaggtacctagactagggaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattactcacttaatcgtttg |
112 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| || || |||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
1504979 |
tggtggtggtagaggtacctagactaggaaaggaggctgccgtaaaagctataaaagaatggggtcagccaaagtcaaagattactcacttaattgtttg |
1505078 |
T |
|
| Q |
113 |
caccacaagtggtgttgacatgcctggagcagattatcaactcaccaaactattaggtcttcgcccatatgtgaaaagatacatgatgtaccaacaaggg |
212 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||| || |||||||||||||| ||||| |
|
|
| T |
1505079 |
caccacaagtggtgtagacatgcctggagctgattaccaactcaccaaactcttaggtcttcgcccatatgtgaagaggtacatgatgtaccagcaagga |
1505178 |
T |
|
| Q |
213 |
tgctttgcaggtggcacggtgctccgtttggctaaagatttggctgagaacaacaaaggtgc |
274 |
Q |
| |
|
|| ||||||||||| |||||||| |||||||| || || ||||||||||||||||||||||| |
|
|
| T |
1505179 |
tgttttgcaggtgggacggtgcttcgtttggccaaggacttggctgagaacaacaaaggtgc |
1505240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 13 - 274
Target Start/End: Original strand, 1482195 - 1482456
Alignment:
| Q |
13 |
tggtggtggtagaggtacctagactagggaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattactcacttaatcgtttg |
112 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||| |||| |
|
|
| T |
1482195 |
tggtggtggtagaggtgcctagactaggaaaggaggctgcagtgaaggctataaaagaatggggccaaccaaaatcaaagattacacacttaatattttg |
1482294 |
T |
|
| Q |
113 |
caccacaagtggtgttgacatgcctggagcagattatcaactcaccaaactattaggtcttcgcccatatgtgaaaagatacatgatgtaccaacaaggg |
212 |
Q |
| |
|
|||||||||||||| ||||||||||| || ||||| |||||||| ||||| ||||||||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
1482295 |
taccacaagtggtgtagacatgcctggtgccgattaccaactcacaaaactcttaggtcttcgtccatatgtgaagagatacatgatgtaccaacaagga |
1482394 |
T |
|
| Q |
213 |
tgctttgcaggtggcacggtgctccgtttggctaaagatttggctgagaacaacaaaggtgc |
274 |
Q |
| |
|
|||||||||||||| |||||||| |||||||| || || ||||||||||| || |||||||| |
|
|
| T |
1482395 |
tgctttgcaggtgggacggtgcttcgtttggccaaggacttggctgagaataataaaggtgc |
1482456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 13 - 274
Target Start/End: Original strand, 1478001 - 1478262
Alignment:
| Q |
13 |
tggtggtggtagaggtacctagactagggaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattactcacttaatcgtttg |
112 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||| ||||| ||| |||| |
|
|
| T |
1478001 |
tggtggtggtagaagtacctagactaggaaaggaggctgcagtgaaagctataaaagaatggggccaaccaaaatcaaagattacacacttgatcttttg |
1478100 |
T |
|
| Q |
113 |
caccacaagtggtgttgacatgcctggagcagattatcaactcaccaaactattaggtcttcgcccatatgtgaaaagatacatgatgtaccaacaaggg |
212 |
Q |
| |
|
||||||||||||||| ||||||||||| || ||||| |||||||||||||| ||||||||||| ||||||||||| || || ||||||||||||||||| |
|
|
| T |
1478101 |
caccacaagtggtgtagacatgcctggcgctgattaccaactcaccaaactcttaggtcttcgtccatatgtgaagaggtatatgatgtaccaacaagga |
1478200 |
T |
|
| Q |
213 |
tgctttgcaggtggcacggtgctccgtttggctaaagatttggctgagaacaacaaaggtgc |
274 |
Q |
| |
|
|| ||||||||||| |||||||| |||||||| || || |||||||||||||| |||||||| |
|
|
| T |
1478201 |
tgttttgcaggtgggacggtgcttcgtttggccaaggacttggctgagaacaataaaggtgc |
1478262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 13 - 259
Target Start/End: Original strand, 1509126 - 1509372
Alignment:
| Q |
13 |
tggtggtggtagaggtacctagactagggaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattactcacttaatcgtttg |
112 |
Q |
| |
|
||||||| ||| |||||||||| ||||| || |||| ||||||||||||||||||||||||||| || ||||| ||||||||||| || |||||| |||| |
|
|
| T |
1509126 |
tggtggttgtaaaggtacctaggctaggaaaagaggttgcagtgaaggctataaaagaatggggccagccaaaatcaaagattacacatttaatcttttg |
1509225 |
T |
|
| Q |
113 |
caccacaagtggtgttgacatgcctggagcagattatcaactcaccaaactattaggtcttcgcccatatgtgaaaagatacatgatgtaccaacaaggg |
212 |
Q |
| |
|
|||||||||||||||||| ||| ||||||| |||||||||| |||||||| |||||||||| ||||||||| ||||| |||||||||||||||||| || |
|
|
| T |
1509226 |
caccacaagtggtgttgatatgtctggagctcattatcaacttaccaaacttttaggtcttcacccatatgtaaaaaggtacatgatgtaccaacaaagg |
1509325 |
T |
|
| Q |
213 |
tgctttgcaggtggcacggtgctccgtttggctaaagatttggctga |
259 |
Q |
| |
|
|| |||||||||||||| ||||| | |||||| || ||||||||||| |
|
|
| T |
1509326 |
tgttttgcaggtggcactgtgcttcatttggcaaaggatttggctga |
1509372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 20 - 274
Target Start/End: Original strand, 1499249 - 1499503
Alignment:
| Q |
20 |
ggtagaggtacctagactagggaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattactcacttaatcgtttgcaccaca |
119 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||| || ||||| |||||||| |
|
|
| T |
1499249 |
ggtagagatacctagactagggaaggaggctgcagtgaaggctatcgaagaatggggtcaaccgaagtcaaatattacacatttaattttttgcacctat |
1499348 |
T |
|
| Q |
120 |
agtggtgttgacatgcctggagcagattatcaactcaccaaactattaggtcttcgcccatatgtgaaaagatacatgatgtaccaacaagggtgctttg |
219 |
Q |
| |
|
|||||||| ||||||||||| || ||||| ||||| || ||||| ||||||||| ||||||||||||||| |||||||||||||||| |||||| | || |
|
|
| T |
1499349 |
agtggtgtagacatgcctggtgcggattaccaactaacaaaactcttaggtcttaacccatatgtgaaaaggtacatgatgtaccaactagggtgttatg |
1499448 |
T |
|
| Q |
220 |
caggtggcacggtgctccgtttggctaaagatttggctgagaacaacaaaggtgc |
274 |
Q |
| |
|
||||||| || || || |||||||| || || || |||||||| ||||||||||| |
|
|
| T |
1499449 |
caggtggaacagtacttcgtttggcgaaggacttagctgagaataacaaaggtgc |
1499503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 13 - 270
Target Start/End: Original strand, 1486672 - 1486929
Alignment:
| Q |
13 |
tggtggtggtagaggtacctagactagggaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattactcacttaatcgtttg |
112 |
Q |
| |
|
|||||||| ||| || ||||| ||||| || |||||||||||||| ||||||||||||| ||| |||||||||||||||||||| |||||||| |||| |
|
|
| T |
1486672 |
tggtggtgcgagacgtgcctaggctaggaaatgaggctgcagtgaaagctataaaagaatagggccaaccaaagtcaaagattacacacttaatattttg |
1486771 |
T |
|
| Q |
113 |
caccacaagtggtgttgacatgcctggagcagattatcaactcaccaaactattaggtcttcgcccatatgtgaaaagatacatgatgtaccaacaaggg |
212 |
Q |
| |
|
||||| |||||| | | ||||||||| || ||||| |||||||| ||||| ||||||||| |||| |||||||| | || ||||| ||||||||||| |
|
|
| T |
1486772 |
caccatgagtggtataggcatgcctggtgccgattaccaactcacaaaactcttaggtctttgcccggatgtgaaacggtatatgatataccaacaagga |
1486871 |
T |
|
| Q |
213 |
tgctttgcaggtggcacggtgctccgtttggctaaagatttggctgagaacaacaaag |
270 |
Q |
| |
|
||||||||||| ||||| || || |||| ||| || || |||||||||||||| |||| |
|
|
| T |
1486872 |
tgctttgcagggggcactgttctacgttaggccaaggacttggctgagaacaataaag |
1486929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 13 - 274
Target Start/End: Original strand, 44128576 - 44128837
Alignment:
| Q |
13 |
tggtggtggtagaggtacctagactagggaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattactcacttaatcgtttg |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
44128576 |
tggtggtggtagaggtacctagactagggaaggaggctgcagtgaaggccataaaagaatggggtcaaccaaagtcaaagattactcacttgatcgtttg |
44128675 |
T |
|
| Q |
113 |
caccacaagtggtgttgacatgcctggagcagattatcaactcaccaaactattaggtcttcgcccatatgtgaaaagatacatgatgtaccaacaaggg |
212 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||| |||||||| ||||| |||||||||||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
44128676 |
caccacaagtggtgtagacatgcctggagctgattaccaactcacaaaactcttaggtcttcgcccatatgtgaaaaggtatatgatgtaccaacaaggt |
44128775 |
T |
|
| Q |
213 |
tgctttgcaggtggcacggtgctccgtttggctaaagatttggctgagaacaacaaaggtgc |
274 |
Q |
| |
|
||||||||||| |||||||| || ||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
44128776 |
tgctttgcaggaggcacggtccttcgtttggctaaagatttagctgaaaacaacaaaggtgc |
44128837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 13 - 274
Target Start/End: Original strand, 44132781 - 44133042
Alignment:
| Q |
13 |
tggtggtggtagaggtacctagactagggaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattactcacttaatcgtttg |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
44132781 |
tggtggtggtagaggtacctagactagggaaggaggctgcagtgaaggccataaaagaatggggtcaaccaaagtcaaagattactcacttgatcgtttg |
44132880 |
T |
|
| Q |
113 |
caccacaagtggtgttgacatgcctggagcagattatcaactcaccaaactattaggtcttcgcccatatgtgaaaagatacatgatgtaccaacaaggg |
212 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||| |||||||| ||||| |||||||||||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
44132881 |
caccacaagtggtgtagacatgcctggagctgattaccaactcacaaaactcttaggtcttcgcccatatgtgaaaaggtatatgatgtaccaacaaggt |
44132980 |
T |
|
| Q |
213 |
tgctttgcaggtggcacggtgctccgtttggctaaagatttggctgagaacaacaaaggtgc |
274 |
Q |
| |
|
||||||||||| |||||||| || ||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
44132981 |
tgctttgcaggaggcacggtccttcgtttggctaaagatttagctgaaaacaacaaaggtgc |
44133042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 13 - 274
Target Start/End: Original strand, 44141203 - 44141464
Alignment:
| Q |
13 |
tggtggtggtagaggtacctagactagggaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattactcacttaatcgtttg |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
44141203 |
tggtggtggtagaggtacctagactagggaaggaggctgcagtgaaggccataaaagaatggggtcaaccaaagtcaaagattactcacttgatcgtttg |
44141302 |
T |
|
| Q |
113 |
caccacaagtggtgttgacatgcctggagcagattatcaactcaccaaactattaggtcttcgcccatatgtgaaaagatacatgatgtaccaacaaggg |
212 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||| |||||||| ||||| |||||||||||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
44141303 |
caccacaagtggtgtagacatgcctggagctgattaccaactcacaaaactcttaggtcttcgcccatatgtgaaaaggtatatgatgtaccaacaaggt |
44141402 |
T |
|
| Q |
213 |
tgctttgcaggtggcacggtgctccgtttggctaaagatttggctgagaacaacaaaggtgc |
274 |
Q |
| |
|
||||||||||| |||||||| || ||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
44141403 |
tgctttgcaggaggcacggtccttcgtttggctaaagatttagctgaaaacaacaaaggtgc |
44141464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 13 - 272
Target Start/End: Complemental strand, 24163910 - 24163651
Alignment:
| Q |
13 |
tggtggtggtagaggtacctagactagggaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattactcacttaatcgtttg |
112 |
Q |
| |
|
||||||| ||||||| ||| |||||||| |||||||| || ||||||||||||||||||||||| ||||||||||||||||| || |||||||| |||| |
|
|
| T |
24163910 |
tggtggtagtagaggcaccaagactaggaaaggaggcagccgtgaaggctataaaagaatggggccaaccaaagtcaaagatcacacacttaatattttg |
24163811 |
T |
|
| Q |
113 |
caccacaagtggtgttgacatgcctggagcagattatcaactcaccaaactattaggtcttcgcccatatgtgaaaagatacatgatgtaccaacaaggg |
212 |
Q |
| |
|
||| | ||||||||| || |||||||| || ||||| |||||||| ||||| |||||||||||||||| ||| ||||| || |||||||||||||||||| |
|
|
| T |
24163810 |
cactataagtggtgtagatatgcctggtgccgattaccaactcacaaaactcttaggtcttcgcccatgtgtaaaaaggtatatgatgtaccaacaaggg |
24163711 |
T |
|
| Q |
213 |
tgctttgcaggtggcacggtgctccgtttggctaaagatttggctgagaacaacaaaggt |
272 |
Q |
| |
|
|| ||||||||||||||||| || || ||||| || || ||||||||||||||||||||| |
|
|
| T |
24163710 |
tgttttgcaggtggcacggtacttcgcttggccaaggacttggctgagaacaacaaaggt |
24163651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 100; Significance: 2e-49; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 36 - 271
Target Start/End: Complemental strand, 37863487 - 37863252
Alignment:
| Q |
36 |
ctagggaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattactcacttaatcgtttgcaccacaagtggtgttgacatgc |
135 |
Q |
| |
|
||||| || ||||||||| |||||||| || |||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||| || |||| |
|
|
| T |
37863487 |
ctaggaaaagaggctgcaacaaaggctatcaaggaatggggtcaacctaagtcaaagattactcatctaattttttgcaccacaagtggtgtggatatgc |
37863388 |
T |
|
| Q |
136 |
ctggagcagattatcaactcaccaaactattaggtcttcgcccatatgtgaaaagatacatgatgtaccaacaagggtgctttgcaggtggcacggtgct |
235 |
Q |
| |
|
|||| || || ||||| ||||| || || || ||||||||||| |||||||| | || |||||||| |||||||| || ||||| ||||| |||||||| |
|
|
| T |
37863387 |
ctggtgctgactatcagctcacaaagctcttgggtcttcgcccgtatgtgaagcgttatatgatgtatcaacaaggttgttttgctggtgggacggtgct |
37863288 |
T |
|
| Q |
236 |
ccgtttggctaaagatttggctgagaacaacaaagg |
271 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |
|
|
| T |
37863287 |
tcgtttggctaaagatttggctgaaaacaacaaagg |
37863252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 13 - 274
Target Start/End: Complemental strand, 37859484 - 37859223
Alignment:
| Q |
13 |
tggtggtggtagaggtacctagactagggaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagattactcacttaatcgtttg |
112 |
Q |
| |
|
||||||| || |||||||| |||||||| || ||||| ||| ||||| || || |||||||||||||| ||||| |||||||| ||| | ||| |||| |
|
|
| T |
37859484 |
tggtggttgtggaggtaccaagactaggaaaagaggcagcaacaaaggccatcaaggaatggggtcaacctaagtccaagattacccacctcatcttttg |
37859385 |
T |
|
| Q |
113 |
caccacaagtggtgttgacatgcctggagcagattatcaactcaccaaactattaggtcttcgcccatatgtgaaaagatacatgatgtaccaacaaggg |
212 |
Q |
| |
|
|||||| ||||| || |||||||| || || || ||||| || || || || || || ||||| ||||||||||| | |||||||||||||||||||| |
|
|
| T |
37859384 |
caccaccagtggcgtggacatgcccggtgccgactatcagctgacaaagctcttgggccttcgtccatatgtgaagcgttacatgatgtaccaacaaggt |
37859285 |
T |
|
| Q |
213 |
tgctttgcaggtggcacggtgctccgtttggctaaagatttggctgagaacaacaaaggtgc |
274 |
Q |
| |
|
|| ||||| |||||||||||||| |||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
37859284 |
tgttttgctggtggcacggtgcttcgtttggctaaagacttggctgaaaacaacaaaggtgc |
37859223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 57 - 274
Target Start/End: Original strand, 39030117 - 39030334
Alignment:
| Q |
57 |
aaggctataaaagaatggggtcaaccaaagtcaaagattactcacttaatcgtttgcaccacaagtggtgttgacatgcctggagcagattatcaactca |
156 |
Q |
| |
|
|||||||| || |||||||||||||| ||||||| | ||||||| | || ||||||| |||||||||| || ||||||||||| || ||||| |||| |
|
|
| T |
39030117 |
aaggctatcaatgaatggggtcaacctaagtcaatggttactcatctcatattttgcacttcaagtggtgtcgatatgcctggagctgactatcagctca |
39030216 |
T |
|
| Q |
157 |
ccaaactattaggtcttcgcccatatgtgaaaagatacatgatgtaccaacaagggtgctttgcaggtggcacggtgctccgtttggctaaagatttggc |
256 |
Q |
| |
|
| || || ||||| ||| | |||||||| || | || ||||||||||||||||| || ||||| |||| | || || || ||||||||||||||||| |
|
|
| T |
39030217 |
caaagctcttaggcctttgtccatatgtaaagcgttatatgatgtaccaacaaggttgttttgctggtgcgatggctcttcgcttggctaaagatttggc |
39030316 |
T |
|
| Q |
257 |
tgagaacaacaaaggtgc |
274 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
39030317 |
tgagaacaacaaaggtgc |
39030334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 122 - 163
Target Start/End: Complemental strand, 40421929 - 40421888
Alignment:
| Q |
122 |
tggtgttgacatgcctggagcagattatcaactcaccaaact |
163 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||| |||||| |
|
|
| T |
40421929 |
tggtgttgacatgcctggtgctgattatcaactcatcaaact |
40421888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 69 - 274
Target Start/End: Original strand, 35250869 - 35251074
Alignment:
| Q |
69 |
gaatggggtcaaccaaagtcaaagattactcacttaatcgtttgcaccacaagtggtgttgacatgcctggagcagattatcaactcaccaaactattag |
168 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||| | || |||||| || |||||||| || |||||||| || |||||||| ||||| ||| | ||| |
|
|
| T |
35250869 |
gaatggggtcaaccaaagtccaagatcactcacctcatattttgcattactagtggtgtggatatgcctggtgctgattatcagctcacaaaattgctag |
35250968 |
T |
|
| Q |
169 |
gtcttcgcccatatgtgaaaagatacatgatgtaccaacaagggtgctttgcaggtggcacggtgctccgtttggctaaagatttggctgagaacaacaa |
268 |
Q |
| |
|
| ||||| || | |||||| | || |||||||||||||||||||| || || ||||| | ||| || ||||||||||||||||||||||||||||| || |
|
|
| T |
35250969 |
gacttcgtccgtcggtgaaacgttatatgatgtaccaacaagggtgtttcgctggtggtatggttcttcgtttggctaaagatttggctgagaacaataa |
35251068 |
T |
|
| Q |
269 |
aggtgc |
274 |
Q |
| |
|
|||||| |
|
|
| T |
35251069 |
aggtgc |
35251074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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