View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8999_low_6 (Length: 520)
Name: NF8999_low_6
Description: NF8999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8999_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 18 - 376
Target Start/End: Original strand, 35164804 - 35165162
Alignment:
| Q |
18 |
aatagtgatggtggttctataactatgggtagttctcctaggtttccgatgtatgacaatgattttggttgggggaaaccgttggtggttaggagtggga |
117 |
Q |
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| T |
35164804 |
aatagtgatggtggttctataactatgggtagttctcctaggtttccgatgtatgacaatgattttggttgggggaaacccttggtggttaggagtggga |
35164903 |
T |
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| Q |
118 |
aagcgaataaatttgacggtaagatttcggcgtttccagggagagatggaagtgggacggttgatttggaggttgttttggcgccagaaactatggcggc |
217 |
Q |
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| T |
35164904 |
aagcgaataaatttgacggtaagatttcggcgtttccagggagagatggaagtgggacggttgatttggaggttgtattggcgccagaaactatggcggc |
35165003 |
T |
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| Q |
218 |
tcttgagttagataccgagtttatgacttatgcgacgaggcagttataacacgtgttgtgttttggtgggtacaacttaactactgatggtgtcattgtg |
317 |
Q |
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| T |
35165004 |
tcttgaattagataccgagtttatgacttatgcgacgaggcagttataacacgtgttgtgttttggtgggtacaacttaactactgatggtgtcattgtg |
35165103 |
T |
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| Q |
318 |
gtcttggttggttctaacgtgtgttgagttcttgagactgtggggtctattgtgacata |
376 |
Q |
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| T |
35165104 |
gtcttggttggttctaatgtgtgttgagttcttgagactgtggggtctattgtgacata |
35165162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 451 - 514
Target Start/End: Original strand, 35165236 - 35165299
Alignment:
| Q |
451 |
atcaacttgacagttaatatcctcttttcttttgtttcaacttgcagtatcacattcacaatct |
514 |
Q |
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| T |
35165236 |
atcaacttgacagttaatatcctcttttcttttgtttcaacttgcagtatcacattcacaatct |
35165299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 42 - 160
Target Start/End: Original strand, 31439838 - 31439956
Alignment:
| Q |
42 |
atgggtagttctcctaggtttccgatgtatgacaatgattttggttgggggaaaccgttggtggttaggagtgggaaagcgaataaatttgacggtaaga |
141 |
Q |
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| T |
31439838 |
atgggaagttcccataggtttccgatgtatgagaatgattttggatgggggcggccgttggcggtgaggagtggtggtgcgaataagtttgatgggaaga |
31439937 |
T |
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| Q |
142 |
tttcggcgtttccagggag |
160 |
Q |
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| T |
31439938 |
tgtcggcgtttccggggag |
31439956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 36 - 197
Target Start/End: Original strand, 4410361 - 4410522
Alignment:
| Q |
36 |
ataactatgggtagttctcctaggtttccgatgtatgacaatgattttggttgggggaaaccgttggtggttaggagtgggaaagcgaataaatttgacg |
135 |
Q |
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| T |
4410361 |
ataactatgggtagttcaccacgttttcctatgtatgataatgattttgggtggggtatacctttggctataaggagtggtaaaagtaataaatttgatg |
4410460 |
T |
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| Q |
136 |
gtaagatttcggcgtttccagggagagatggaagtgggacggttgatttggaggttgttttg |
197 |
Q |
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| T |
4410461 |
gtaaaatttcagcttttcctggtagagaaggaaatgggagtgttgatcttgaagttgttttg |
4410522 |
T |
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