View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8999_low_7 (Length: 415)
Name: NF8999_low_7
Description: NF8999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8999_low_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 356
Target Start/End: Complemental strand, 3924046 - 3923683
Alignment:
| Q |
1 |
aaacaaaaagttctatattttaaaacttgtttagggcttataa-------acaatgaaagggcttgaagagaaatcttccaaacttaatttattccact- |
92 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
3924046 |
aaacaaaaagttctatattttaaaacttgtttagggcttataatttataaacaatgaaagggctagaagagaaatcttccaaacttaatttattccacca |
3923947 |
T |
|
| Q |
93 |
gaaaatattatttagtcctaagatgagcccaaaccaaacaaaaacagcaagtttcatgtagaaacttcatcaaccacacgtaaactctatttcttacaat |
192 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3923946 |
gaaaatattatttagtcccaagatgagcccaaaccaaacaaaaacagcaagtttcatgtagaaacttcatcaaccacacgtaaactctatttcttacaat |
3923847 |
T |
|
| Q |
193 |
gtgacttcccactctatctataacaaaattacaattgcaaatgcatagatgaggaaccatccaaataccattatgtcatatttaggaagaaaattagaat |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3923846 |
gtgacttcccactctatctataacaaaattacaattgcaaatgcatagatgaggaaccatccaaataccattatgtcatatttaggaagaaaattagaat |
3923747 |
T |
|
| Q |
293 |
tcacccacctgcatctttcatatatgtccaccactaacctcaaacctcaaacgtatccctaatt |
356 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3923746 |
tcacccacctgcatctttcatatatgtccaccactaacctcaaacctcaaacgtatccctaatt |
3923683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 255 - 315
Target Start/End: Original strand, 14202065 - 14202125
Alignment:
| Q |
255 |
aaataccattatgtcatatttaggaagaaaattagaattcacccacctgcatctttcatat |
315 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||||||| |||| |||||||| |||| |
|
|
| T |
14202065 |
aaataccatgatgtcatatttaggaagaaatttagaattcaaccactagcatctttgatat |
14202125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 247 - 306
Target Start/End: Original strand, 7421245 - 7421304
Alignment:
| Q |
247 |
aaccatccaaataccattatgtcatatttaggaagaaaattagaattcacccacctgcat |
306 |
Q |
| |
|
||||| ||||||||||| |||| |||||| ||||||||||||||||||| ||||| |||| |
|
|
| T |
7421245 |
aaccacccaaataccatgatgtgatattttggaagaaaattagaattcaaccaccagcat |
7421304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 310
Target Start/End: Original strand, 13573961 - 13574018
Alignment:
| Q |
253 |
ccaaataccattatgtcatatttaggaagaaaattagaattcacccacctgcatcttt |
310 |
Q |
| |
|
||||||| ||| || | ||||| |||||||||||||||||||| ||||| |||||||| |
|
|
| T |
13573961 |
ccaaatagcatgatattatattaaggaagaaaattagaattcaaccaccagcatcttt |
13574018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 317
Target Start/End: Original strand, 13567908 - 13567960
Alignment:
| Q |
265 |
atgtcatatttaggaagaaaattagaattcacccacctgcatctttcatatat |
317 |
Q |
| |
|
|||||||||||| ||||||||||| |||||| |||| |||||||| |||||| |
|
|
| T |
13567908 |
atgtcatatttatgaagaaaattaaaattcaaccactagcatctttgatatat |
13567960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University