View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9000_high_19 (Length: 272)

Name: NF9000_high_19
Description: NF9000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9000_high_19
NF9000_high_19
[»] chr2 (16 HSPs)
chr2 (38-192)||(32311019-32311173)
chr2 (11-184)||(28222451-28222623)
chr2 (38-190)||(28213647-28213797)
chr2 (38-155)||(32813371-32813488)
chr2 (47-157)||(32792566-32792676)
chr2 (38-141)||(32563728-32563831)
chr2 (110-192)||(32790292-32790374)
chr2 (200-254)||(32790205-32790259)
chr2 (47-96)||(32799246-32799295)
chr2 (120-180)||(32799187-32799247)
chr2 (200-251)||(32799108-32799159)
chr2 (200-254)||(28213552-28213606)
chr2 (200-254)||(32812343-32812396)
chr2 (47-100)||(32785109-32785163)
chr2 (200-251)||(32306851-32306902)
chr2 (135-192)||(32812435-32812489)
[»] chr5 (2 HSPs)
chr5 (200-254)||(31783700-31783754)
chr5 (149-192)||(31783622-31783665)


Alignment Details
Target: chr2 (Bit Score: 119; Significance: 7e-61; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 38 - 192
Target Start/End: Original strand, 32311019 - 32311173
Alignment:
Q  38 gtgttatggtatgctttattaaaactttgattccaaggtattgaagtatatttttgtataagctccctattcaactctaacaattagagatccagaaatg 137  Q
    ||||| || |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||    
T  32311019 gtgttctgttatgttttattaaaacttggattccaaggtattgaagtatatttttgtataagctccctattcaactcttacaattagagatcaataaatg 32311118  T
Q  138 attcctagatatgatattgcaagtcacaactgcttctgtgatggttcctctccta 192  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  32311119 attcttagatatgatattgcaagtcacaactgcttctgtgatggttcctgtccta 32311173  T

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Target: chr2; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 11 - 184
Target Start/End: Original strand, 28222451 - 28222623
Alignment:
Q  11 gtgttgcaaggctgcagtaaatataaggtgttatggtatgctttattaaaactttgattccaaggtattgaagtatatttttgtataagctccctattca 110  Q
    |||||||||||||||| |||||  ||| |||| || ||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  28222451 gtgttgcaaggctgcaataaatcaaag-tgttctgttatgccttaataaaacttggattccaaggtattgaagtatatttttgtataagctccctattca 28222549  T
Q  111 actctaacaattagagatccagaaatgattcctagatatgatattgcaagtcacaactgcttctgtgatggttc 184  Q
    ||||| ||||||| ||||| || ||| |||| ||||||||||| | ||||||||| ||||||||||||||||||    
T  28222550 actcttacaattatagatcaaggaatcattcttagatatgataatacaagtcacagctgcttctgtgatggttc 28222623  T

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Target: chr2; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 38 - 190
Target Start/End: Complemental strand, 28213797 - 28213647
Alignment:
Q  38 gtgttatggtatgctttattaaaactttgattccaaggtattgaagtatatttttgtataagctccctattcaactctaacaattagagatccagaaatg 137  Q
    ||||| || ||||| ||| |||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||| |||||||||||||  | |||     
T  28213797 gtgttctgttatgccttaataaaacttggattccaaggtattgaagtatatttttgta--agctccctattcaactcttacaattagagatcttggaata 28213700  T
Q  138 attcctagatatgatattgcaagtcacaactgcttctgtgatggttcctctcc 190  Q
    ||||   ||||||||||||||||||||||||||||||||||||||||||||||    
T  28213699 attctatgatatgatattgcaagtcacaactgcttctgtgatggttcctctcc 28213647  T

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Target: chr2; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 38 - 155
Target Start/End: Complemental strand, 32813488 - 32813371
Alignment:
Q  38 gtgttatggtatgctttattaaaactttgattccaaggtattgaagtatatttttgtataagctccctattcaactctaacaattagagatccagaaatg 137  Q
    ||||| || |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||    
T  32813488 gtgttctgttatgttttattaaaacttggattccaaggtattgaagtatatttttgtataagctccctattcaactcttacaattagagatcaataaatg 32813389  T
Q  138 attcctagatatgatatt 155  Q
    |||| |||||||||||||    
T  32813388 attcttagatatgatatt 32813371  T

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Target: chr2; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 47 - 157
Target Start/End: Complemental strand, 32792676 - 32792566
Alignment:
Q  47 tatgctttattaaaactttgattccaaggtattgaagtatatttttgtataagctccctattcaactctaacaattagagatccagaaatgattcctaga 146  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||| | ||||||||| ||||    
T  32792676 tatgctttattaaaacttggattccaaggtattgaagtatatttttgtataagctccgtattgaactcttacaattagagatcaataaatgattcttaga 32792577  T
Q  147 tatgatattgc 157  Q
    ||||| |||||    
T  32792576 tatgagattgc 32792566  T

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Target: chr2; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 38 - 141
Target Start/End: Complemental strand, 32563831 - 32563728
Alignment:
Q  38 gtgttatggtatgctttattaaaactttgattccaaggtattgaagtatatttttgtataagctccctattcaactctaacaattagagatccagaaatg 137  Q
    ||||| || |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||| ||| | |||||    
T  32563831 gtgttctgttatgctttattaaaacttggattccaaggtattgaagtatatttttttataagctccctattcagctcttacaattagatatcaataaatg 32563732  T
Q  138 attc 141  Q
    ||||    
T  32563731 attc 32563728  T

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Target: chr2; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 110 - 192
Target Start/End: Complemental strand, 32790374 - 32790292
Alignment:
Q  110 aactctaacaattagagatccagaaatgattcctagatatgatattgcaagtcacaactgcttctgtgatggttcctctccta 192  Q
    |||||| ||||||||||||  | ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  32790374 aactcttacaattagagattaataaatgattcttagatatgatattgcaagtcacaactgcttctgtgatggtttctctccta 32790292  T

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Target: chr2; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 200 - 254
Target Start/End: Complemental strand, 32790259 - 32790205
Alignment:
Q  200 tagtaagcagcattccatcatggacacagttgcgcggatataaggaatcaacttt 254  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  32790259 tagtaagcagcagtccatcatggacacagttgtgcggatataaggaatcaacttt 32790205  T

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Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 32799295 - 32799246
Alignment:
Q  47 tatgctttattaaaactttgattccaaggtattgaagtatatttttgtat 96  Q
    ||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  32799295 tatgccttattaaaacttagattccaaggtattgaagtatatttttgtat 32799246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 120 - 180
Target Start/End: Complemental strand, 32799247 - 32799187
Alignment:
Q  120 attagagatccagaaatgattcctagatatgatattgcaagtcacaactgcttctgtgatg 180  Q
    |||||||||| || |||||||| ||||||||||||||||||||||||||| || |||||||    
T  32799247 attagagatcaaggaatgattcttagatatgatattgcaagtcacaactgattatgtgatg 32799187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 200 - 251
Target Start/End: Complemental strand, 32799159 - 32799108
Alignment:
Q  200 tagtaagcagcattccatcatggacacagttgcgcggatataaggaatcaac 251  Q
    |||||||||||| ||||| | |||||||||||||||||||||||||||||||    
T  32799159 tagtaagcagcagtccattacggacacagttgcgcggatataaggaatcaac 32799108  T

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Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 200 - 254
Target Start/End: Complemental strand, 28213606 - 28213552
Alignment:
Q  200 tagtaagcagcattccatcatggacacagttgcgcggatataaggaatcaacttt 254  Q
    |||||||||| | |||||||||||||||||||| |||||||| ||||||||||||    
T  28213606 tagtaagcagaagtccatcatggacacagttgcacggatatatggaatcaacttt 28213552  T

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Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 200 - 254
Target Start/End: Complemental strand, 32812396 - 32812343
Alignment:
Q  200 tagtaagcagcattccatcatggacacagttgcgcggatataaggaatcaacttt 254  Q
    |||||||||||| |||||||||||||||||| ||||||||| |||||||||||||    
T  32812396 tagtaagcagcagtccatcatggacacagttacgcggatat-aggaatcaacttt 32812343  T

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Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 32785163 - 32785109
Alignment:
Q  47 tatgctttattaaaactttgattccaaggtattgaagtatat-ttttgtataagc 100  Q
    ||||| |||||||||||| ||||||||||||||||||||||| ||||| ||||||    
T  32785163 tatgccttattaaaacttggattccaaggtattgaagtatatcttttgaataagc 32785109  T

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Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 200 - 251
Target Start/End: Original strand, 32306851 - 32306902
Alignment:
Q  200 tagtaagcagcattccatcatggacacagttgcgcggatataaggaatcaac 251  Q
    ||||||||  || ||||||||||||| |||||||| ||||||||||||||||    
T  32306851 tagtaagctacagtccatcatggacagagttgcgcagatataaggaatcaac 32306902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 135 - 192
Target Start/End: Complemental strand, 32812489 - 32812435
Alignment:
Q  135 atgattcctagatatgatattgcaagtcacaactgcttctgtgatggttcctctccta 192  Q
    ||||||| ||||| |||||||   |||||||||||| |||||||||||||||||||||    
T  32812489 atgattcttagatttgatatt---agtcacaactgcgtctgtgatggttcctctccta 32812435  T

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Target: chr5 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 200 - 254
Target Start/End: Original strand, 31783700 - 31783754
Alignment:
Q  200 tagtaagcagcattccatcatggacacagttgcgcggatataaggaatcaacttt 254  Q
    |||||||||||| |||||||||||||||||||| |||||||||||||||||||||    
T  31783700 tagtaagcagcagtccatcatggacacagttgcacggatataaggaatcaacttt 31783754  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 192
Target Start/End: Original strand, 31783622 - 31783665
Alignment:
Q  149 tgatattgcaagtcacaactgcttctgtgatggttcctctccta 192  Q
    |||| ||||||| |||||||||||||||||||||||||||||||    
T  31783622 tgatgttgcaaggcacaactgcttctgtgatggttcctctccta 31783665  T

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