View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9000_high_22 (Length: 242)

Name: NF9000_high_22

Description: NF9000

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF9000_high_22

[»] chr7 (1 HSPs)

Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 1)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 202; E-Value: 1e-110

Query Start/End: Original strand, 1 - 242

Target Start/End: Original strand, 36578304 - 36578545

Alignment:

Q	1	tattttagtattttaaacagtttatacgtgagataaaaatcgtcataacatacaaaccaaaaatacttgacgaaagtctaaaacagttgttttattgatt	100	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	36578304	tattttaatattttagacagtttgtacgtgagataaaaattatcataacatacaaaccaaaaatacctaatgaaagtctaaaacaattgttttattgatt	36578403	T

Q	101	ctttgactagctagatatataaaatccaattaagaatgctattgcattatttgtctacatcttgacatgactatacttgatatacatacgtcaaaaagaa	200	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	36578404	ctttgactagctagatatataaaatccaattaagaatgctattgcattatttgtctacatcttgacatgactatacttgatatacatacgtcaaaaagaa	36578503	T

Q	201	aacttgatatacataggtaaataacactacttcacaactcca	242	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|
T	36578504	aacttgatatacataggtaaataacactccttcacaactcca	36578545	T

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