View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9000_low_1 (Length: 1287)
Name: NF9000_low_1
Description: NF9000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9000_low_1 |
 | |
|
| [»] scaffold1506 (2 HSPs) |
| | |
|
| [»] scaffold0254 (1 HSPs) |
| | |
|
| [»] scaffold0394 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 913; Significance: 0; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 913; E-Value: 0
Query Start/End: Original strand, 157 - 1153
Target Start/End: Complemental strand, 18413929 - 18412933
Alignment:
| Q |
157 |
gcagtagttgcagactttgtctggacagtttgaagcataatgtcccaatttcttgcaacagaaacattgaatagcactcatgtcatgacttcttgtcttt |
256 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
18413929 |
gcagtagttgcagactttgtctggacagtttgaagcataatgtcccaatttcttgcaacagaaacattgaacagcactcatgtcacgacttcttgtcttt |
18413830 |
T |
|
| Q |
257 |
cctcgtgccacataagccactggaacagtagacactttttgatcttcaatgatggactgtgtcagcagacgttgttcttcacgtaacagatcattgaaac |
356 |
Q |
| |
|
||||||||||||||||||||| || |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18413829 |
cctcgtgccacataagccactataatagtagaaactttttgatcttcaatgatggactatgtcagcagacgttgttcttcacgtaacagatcattgaaac |
18413730 |
T |
|
| Q |
357 |
atgcatccaatgatggtacagggtttctatacatgagattggaccgaataccttcaaattcagatctcaatttcataagaaattaatctcgcttggtagt |
456 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
18413729 |
atgcatccaatgatggtacagggtttctatgcatgagattggaccgaataccttcaaattcagatctcaatttcataagaaattgatctcgcttggtagt |
18413630 |
T |
|
| Q |
457 |
ttcatgaacagattgtacagaacttaaaccttcagaagttaagtctgcataaactatctcagtatattcagcccaaagattcatgaattgatagtaaaat |
556 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
18413629 |
ttcatgaacagattatacagaacttaaaccttcagaagttaagtctgcataaactatctcagtatattcagcccaaagattcatgaattgagagtaaaat |
18413530 |
T |
|
| Q |
557 |
tcagagatggagagactatcctgtttaaataaggctatgtcgtgttcaagctggaatcttcgagcagcgttgttctgattgtagactttcttcaagtaat |
656 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
18413529 |
tcagagatggagagactatcctgtttaaataaggctatgtcgtgttcaagctggaatcttcgagcggcattgttctgattgtagactttcttcaagtaat |
18413430 |
T |
|
| Q |
657 |
cccacattgtggctgctgttttgtaaggtcggagattcaagacaatgtttggatcaacagaacctaggacccaggacatgacttgagcatctttgactac |
756 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18413429 |
tccactttgtggctgctgttttgtaaggtcggagattcaggacaatgtttggatcaacagaacctaggacccaggacatgacttgagcatctttgactac |
18413330 |
T |
|
| Q |
757 |
ccatttggcaggtgtaaccttatctttctctttgtcaggaactggagtgctgccatcaacatgaccccacaaatcttttcccgtgacaaatatctcgaaa |
856 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
18413329 |
ccatttggcatgtgtaaccttatctttctctttgtcaggaactgaagtgctgccatcaacatgacctcacaaatcttttcccgtgacaaatatctcgaaa |
18413230 |
T |
|
| Q |
857 |
tggaatgcccaagttgagtagtttttgccattaaggcgaaccaccaagatttcatgcttttcggtagacatgtgactatgaaaataggtattgaacaaga |
956 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
18413229 |
tggaatgcccaagttgagtagtttttgccattaaggcgaaccaccaagatttcatgcttttcggtagacatgtgactatgaaaatacgtattgaacaaga |
18413130 |
T |
|
| Q |
957 |
atgagaggttaatctggactgggaaacgaataaccgagacacagaagtgaaaagaaaagaaaaacagactaggttcttggattgtaacctaggctgatac |
1056 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18413129 |
atgagaggttaatctggactgggaaacgaataaccgagacacagaagtgaaatgaaaagaaaaacagactaggttcttggattgtaacctaggctgatac |
18413030 |
T |
|
| Q |
1057 |
catgttagactcaaagaaactaagaaatgagggatgtttaaactcagagagactaagagaaatgagggtcaaaactgtgtccctcttcattctgatt |
1153 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18413029 |
catgttagactcaaagaaactaagaaatgagggatgtttaaactcagagagactaagagaaatgagggtcaaaactgtgtccctcttcattctgatt |
18412933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 801; E-Value: 0
Query Start/End: Original strand, 127 - 1001
Target Start/End: Complemental strand, 5287917 - 5287044
Alignment:
| Q |
127 |
cattccttcagaatatgtccgtcnnnnnnngcagtagttgcagactttgtctggacagtttgaagcataatgtcccaatttcttgcaacagaaacattga |
226 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5287917 |
cattccttcagaatatgtccgtctttttt-gcagtagttgcagactttgtctggacagtttgaagcataatgtcccaatttcttgcaacagaaacattga |
5287819 |
T |
|
| Q |
227 |
atagcactcatgtcatgacttcttgtctttcctcgtgccacataagccactggaacagtagacactttttgatcttcaatgatggactgtgtcagcagac |
326 |
Q |
| |
|
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5287818 |
acaacactcatgtcatgacttcttgtctttcctcgtgccacataagccactggaacagtagacactttttgatcttcaatgatggactgtgtcagcagat |
5287719 |
T |
|
| Q |
327 |
gttgttcttcacgtaacagatcattgaaacatgcatccaatgatggtacagggtttctatacatgagattggaccgaataccttcaaattcagatctcaa |
426 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5287718 |
gttgttcttcacgtaacatatcattgaaacatgcatccaatgatggtacagggtttctatgcatgagattggaccgaataccttcaaattcagatctcaa |
5287619 |
T |
|
| Q |
427 |
tttcataagaaattaatctcgcttggtagtttcatgaacagattgtacagaacttaaaccttcagaagttaagtctgcataaactatctcagtatattca |
526 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5287618 |
tttcataagaaattgatctcgcttggtagtttcatgaacagattgtacagaacttaaaccttcagaagttaagtctgcataaactatctcagtatattca |
5287519 |
T |
|
| Q |
527 |
gcccaaagattcatgaattgatagtaaaattcagagatggagagactatcctgtttaaataaggctatgtcgtgttcaagctggaatcttcgagcagcgt |
626 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
5287518 |
gcccaaagattcatgaattgagagtaaaattcagagatggagagactatcctgtttaaataaggctatgtcgtgttcaagctggaatcttcgagcggcgt |
5287419 |
T |
|
| Q |
627 |
tgttctgattgtagactttcttcaagtaatcccacattgtggctgctgttttgtaaggtcggagattcaagacaatgtttggatcaacagaacctaggac |
726 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
5287418 |
tgttctgattgtagactttcttcaagtagtcccacattgtggctgctgttttgtaaggtcggagattcaggacaatgtttggatcaacagaacctaggac |
5287319 |
T |
|
| Q |
727 |
ccaggacatgacttgagcatctttgactacccatttggcaggtgtaaccttatctttctctttgtcaggaactggagtgctgccatcaacatgaccccac |
826 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5287318 |
ccaggacatgacttgagcatctttcactacccatttggcatgtgtaaccttatctttctctttgtcaggaactggagtgctgccatcaacatgaccccac |
5287219 |
T |
|
| Q |
827 |
aaatcttttcccgtgacaaatatctcgaaatggaatgcccaagttgagtagtttttgccattaaggcgaaccaccaagatttcatgcttttcggtagaca |
926 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5287218 |
aaatcttttcccgtgacaaatatctcgaaatggaatgcccaagttgagtagtttttgccattaaggcgaaccaccaagatttcatgcttttcggtagaca |
5287119 |
T |
|
| Q |
927 |
tgtgactatgaaaataggtattgaacaagaatgagaggttaatctggactgggaaacgaataaccgagacacaga |
1001 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5287118 |
tgtgactatgaaaataggtattgaacaagaatgagaggttaatctggactgggaaacgaataaccgagacacaga |
5287044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 1020 - 1270
Target Start/End: Complemental strand, 5287048 - 5286798
Alignment:
| Q |
1020 |
acagactaggttcttggattgtaacctaggctgataccatgttagactcaaagaaactaagaaatgagggatgtttaaactcagagagactaagagaaat |
1119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5287048 |
acagactaggttcttggattgtaacctaggctgataccatgttagactcaaagaaactaagaaatgagggatgtttaaactcagagagactaagagaaat |
5286949 |
T |
|
| Q |
1120 |
gagggtcaaaactgtgtccctcttcattctgatttctcatataaatacaatgcaattacaagctttcaagttgactttcaacccactaaattagctaaac |
1219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
5286948 |
gagggtcaaaactgtgtccctcttcattctgatttctcatataaatacaatgcaattacaagctttcaagttgactttcaacccaataaattagctaaac |
5286849 |
T |
|
| Q |
1220 |
tgacatatatacatttacagctaattatgctaattgattgaatgattattt |
1270 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
5286848 |
tgacatatatacatttacagctaattatgctaattgatagaatgattattt |
5286798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 1050 - 1270
Target Start/End: Complemental strand, 18412938 - 18412718
Alignment:
| Q |
1050 |
ctgataccatgttagactcaaagaaactaagaaatgagggatgtttaaactcagagagactaagagaaatgagggtcaaaactgtgtccctcttcattct |
1149 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18412938 |
ctgattccatgttagactcaaagaaactaagaaatgagggatgtttaaactcagagagactaagagaaatgagggtcaaaactgtgtccctcttcattct |
18412839 |
T |
|
| Q |
1150 |
gatttctcatataaatacaatgcaattacaagctttcaagttgactttcaacccactaaattagctaaactgacatatatacatttacagctaattatgc |
1249 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18412838 |
gatttctcatataaatacaatgcaattacaagctttcaagttgactttcaacccactaaattagctaaactgacatatatacatttacagctaattatgc |
18412739 |
T |
|
| Q |
1250 |
taattgattgaatgattattt |
1270 |
Q |
| |
|
|||||||| |||||||||||| |
|
|
| T |
18412738 |
taattgatagaatgattattt |
18412718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1059 - 1270
Target Start/End: Complemental strand, 5291455 - 5291244
Alignment:
| Q |
1059 |
tgttagactcaaagaaactaagaaatgagggatgtttaaactcagagagactaagagaaatgagggtcaaaactgtgtccctcttcattctgatttctca |
1158 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5291455 |
tgttagactcaaagaaactaagaaatgagggatgtttaaactcagagagactaagagaaatgagggtcaaaactgtgtccctcttcattctgatttctca |
5291356 |
T |
|
| Q |
1159 |
tataaatacaatgcaattacaagctttcaagttgactttcaacccactaaattagctaaactgacatatatacatttacagctaattatgctaattgatt |
1258 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5291355 |
tataaatacaatgcaattacaagctttcaagttgactttcaacccaataaattagctaaactgacatatatacatttacagctaattatgctaattgata |
5291256 |
T |
|
| Q |
1259 |
gaatgattattt |
1270 |
Q |
| |
|
|||||||||||| |
|
|
| T |
5291255 |
gaatgattattt |
5291244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1059 - 1270
Target Start/End: Complemental strand, 18417441 - 18417230
Alignment:
| Q |
1059 |
tgttagactcaaagaaactaagaaatgagggatgtttaaactcagagagactaagagaaatgagggtcaaaactgtgtccctcttcattctgatttctca |
1158 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
18417441 |
tgttagactcaaagaaactaagaaatgagggatgtttaaactcagagagactaagagaaatgagggtcaaaactgtgtacctcttcattctgatttctca |
18417342 |
T |
|
| Q |
1159 |
tataaatacaatgcaattacaagctttcaagttgactttcaacccactaaattagctaaactgacatatatacatttacagctaattatgctaattgatt |
1258 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18417341 |
tataaatacaatgcaattacaagctttcaagttgactttcaacccactaaattagctaaactgacatatatacatttacagctaattatgctaattgata |
18417242 |
T |
|
| Q |
1259 |
gaatgattattt |
1270 |
Q |
| |
|
|||||||||||| |
|
|
| T |
18417241 |
gaatgattattt |
18417230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 153; E-Value: 2e-80
Query Start/End: Original strand, 1098 - 1270
Target Start/End: Original strand, 27953447 - 27953619
Alignment:
| Q |
1098 |
actcagagagactaagagaaatgagggtcaaaactgtgtccctcttcattctgatttctcatataaatacaatgcaattacaagctttcaagttgacttt |
1197 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
27953447 |
actcagagaaactaagagaaatgagggtcaaaactgtgtccctcttcattctgatttctcatataaatacaaggcaattacaagctctcaagttgacttt |
27953546 |
T |
|
| Q |
1198 |
caacccactaaattagctaaactgacatatatacatttacagctaattatgctaattgattgaatgattattt |
1270 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
27953547 |
caacccactaaattagctaaattgacatatatacatttacagctaattatgctaattgatagaatgattattt |
27953619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 115; E-Value: 9e-58
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 5288072 - 5287940
Alignment:
| Q |
1 |
aaatgatcatttgttgaaccatttcaggggtcactgatga---agcagtaggagcattttgctgaaccggtgctggattgaccgagttgctaggaataaa |
97 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
5288072 |
aaatgatcatttgttgaaccatttcaggggtcactgatgatgaagcagtaggagcattttgctgaaccggtgctggattgaccgagttgctaggaataga |
5287973 |
T |
|
| Q |
98 |
tgaatcaaccgaggttgtaaaggctgtgacatt |
130 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
5287972 |
tgaatcaaccgaggttgtaaaggctgtgacatt |
5287940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 70; E-Value: 6e-31
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 18414093 - 18413981
Alignment:
| Q |
1 |
aaatgatcatttgttgaaccatttcaggggtcactgatgaagcagtaggagcattttgctgaaccggtgctggattgaccgagttgctaggaataaatga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
18414093 |
aaatgatcatttgttgaaccatttcaggggtcactgatgaagcagtaggagcattttgctgaacc-----------------gttgctaggaatagatga |
18414011 |
T |
|
| Q |
101 |
atcaaccgaggttgtaaaggctgtgacatt |
130 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
18414010 |
atcaaccgaggttgtaaaggctgtgacatt |
18413981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 67; E-Value: 4e-29
Query Start/End: Original strand, 1079 - 1165
Target Start/End: Complemental strand, 35004216 - 35004131
Alignment:
| Q |
1079 |
agaaatgagggatgtttaaactcagagagactaagagaaatgagggtcaaaactgtgtccctcttcattctgatttctcatataaat |
1165 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
35004216 |
agaaatgagggatatt-aaactcagagagactaagagaaatgagggtcaaaactgtatcccccttcattctgatttctcatataaat |
35004131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 861; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 861; E-Value: 0
Query Start/End: Original strand, 125 - 1270
Target Start/End: Complemental strand, 35230696 - 35229570
Alignment:
| Q |
125 |
gacattccttcagaatatgtccgtcnnnnnnngcagtagttgcagactttgtctggacagtttgaagcataatgtcccaatttcttgcaacagaaacatt |
224 |
Q |
| |
|
|||||||||| |||||||||||||| |||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35230696 |
gacattccttgagaatatgtccgtcttgttt-gcagcaattgcagactttgtttggacagtttgaagcataatgtcccaatttcttgcaacagaaacatt |
35230598 |
T |
|
| Q |
225 |
gaatagcactcatgtcatgacttcttgtctttcctcgtgccacataagccactggaacagtagacactttttgatcttcaatgatggactgtgtcagcag |
324 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35230597 |
gaacagcactcatgtcatgacttcttgtctttcctcgtgccacataagccactggaacagaagacactttttgatcttcaatgatggactgtgtcagcag |
35230498 |
T |
|
| Q |
325 |
acgttgttcttcacgtaacagatcattgaaacatgcatccaatgatggtacagggtttctatacatgagattggaccgaataccttcaaattcagatctc |
424 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35230497 |
acgttgttcttcacgtaatagatcattgaaacatgcatccaatgatggtagagggtttctatgcatgagattggaccgaataccttcaaattcagatctc |
35230398 |
T |
|
| Q |
425 |
aatttcataagaaattaatctcgcttggtagtttcatgaacagattgtacagaacttaaaccttcagaagttaagtctgcataaactatctcagtatatt |
524 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
35230397 |
aatttcataagaaattgatctcgcttggtagtttcatgaacagattgtacagaacttagaccttcagaagtcaagtctgcataaactatctcagtatatt |
35230298 |
T |
|
| Q |
525 |
cagcccaaagattcatgaattgatagtaaaattcagagatggagagactatcctgtttaaataaggctatgtcgtgttcaagctggaatcttcgagcagc |
624 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| || |
|
|
| T |
35230297 |
cagcccaaagattcatgaattgagagtaaaattcagagatggagagactatcctgtttaaacaaagctatgtcgtgttcaagctggaatcttcgagcggc |
35230198 |
T |
|
| Q |
625 |
gttgttctgattgtagactttcttcaagtaatcccacattgtggctgctgttttgtaaggtcggagattcaagacaatgtttggatcaacagaacctagg |
724 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
35230197 |
gttgttctgattgtagactttcttcaagtaattccacattgtggctgctgttttgtaaggtcggagattcaggacaatgtttggatcaacagagcctagg |
35230098 |
T |
|
| Q |
725 |
acccaggacatgacttgagcatctttgactacccatttggcaggtgtaaccttatctttctctttgtcaggaactggagtgctgccatcaacatgacccc |
824 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
35230097 |
acccaggacatgacttgagcatctttgactacccatttggcatgtgcaaccttatctttctctttgtcaggaaatggggtgctgccatcaacatgacccc |
35229998 |
T |
|
| Q |
825 |
acaaatcttttcccgtgacaaatatctcgaaatggaatgcccaagttgagtagtttttgccattaaggcgaaccaccaagatttcatgcttttcggtaga |
924 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
35229997 |
acaaatcttttcctgtgacaaatatctcgaaatggaatgcccaagttgagtagtttttgccattaaggcgaaccaccaagatttcatgtttttcggtaga |
35229898 |
T |
|
| Q |
925 |
catgtgactatgaaaataggtattgaacaagaatgagaggttaatctggactgggaaacgaataaccgagacacagaagtgaaaagaaaagaaaaacaga |
1024 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||| |
|
|
| T |
35229897 |
catgtgactatggaaataggtattgaaca------agaggttaatctggactgggaaacgaataactgagacacagaagtgaaaagaata-aaaaacaga |
35229805 |
T |
|
| Q |
1025 |
ctaggttcttggattgtaacctaggctgataccatgttagactcaaagaaactaagaaatgagggatgtttaaactcagagagactaagagaaatgaggg |
1124 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| ||||| |||||| ||||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
35229804 |
ctaggttcttggtttgtaacctaggctgataccatgttaaactcagagaaac--------gagggat-attaaactcagagagacta--agaaatgaggg |
35229716 |
T |
|
| Q |
1125 |
tcaaaactgtgtccctcttcattctgatttctcatataaatacaatgcaattacaagctttcaagttgactttcaacccactaaattagctaaactgaca |
1224 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||||||||||||||||| | ||||||| | |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35229715 |
tcaaaactgtatcccccttcattctgatttctcatataaatacaatgtatttacaagttgccaagttgactttcaacccactaaattagctaaactgacg |
35229616 |
T |
|
| Q |
1225 |
tatatacatttacagctaattatgctaattgattgaatgattattt |
1270 |
Q |
| |
|
| |||| ||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
35229615 |
tgtatatatttacagctaattatgctaattgaaaggatgattattt |
35229570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 110; E-Value: 8e-55
Query Start/End: Original strand, 1094 - 1270
Target Start/End: Complemental strand, 35233726 - 35233552
Alignment:
| Q |
1094 |
ttaaactcagagagactaagagaaatgagggtcaaaactgtgtccctcttcattctgatttctcatataaatacaatgcaattacaagctttcaagttga |
1193 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||| | ||||||| | |||||||| |
|
|
| T |
35233726 |
ttaaactcagagagactaaga--aatgagggtcaaaactgtatcccccttcattctgatttctcatataaatacaatgtatttacaagttgccaagttga |
35233629 |
T |
|
| Q |
1194 |
ctttcaacccactaaattagctaaactgacatatatacatttacagctaattatgctaattgattgaatgattattt |
1270 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||| ||||||| ||||||||||||||||| | |||||||||| |
|
|
| T |
35233628 |
ctttcaacccactaaattagctaaactgacgtgtatatatttacaactaattatgctaattgaaaggatgattattt |
35233552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 94; E-Value: 3e-45
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 35232163 - 35232292
Alignment:
| Q |
1 |
aaatgatcatttgttgaaccatttcaggggtcactgatgaagcagtaggagcattttgctgaaccggtgctggattgaccgagttgctaggaataaatga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |||| | |||||||||| |||||||| ||||||||||||| |||||||||||||||| |||| |
|
|
| T |
35232163 |
aaatgatcatttgttgaaccatttcaggggtgactgttgaactactaggagcattctgctgaactggtgctggattgatcgagttgctaggaatagatga |
35232262 |
T |
|
| Q |
101 |
atcaaccgaggttgtaaaggctgtgacatt |
130 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
35232263 |
atcaaccgaggttgtaaaggctgtgacatt |
35232292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 856; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 856; E-Value: 0
Query Start/End: Original strand, 125 - 1270
Target Start/End: Complemental strand, 63403 - 62275
Alignment:
| Q |
125 |
gacattccttcagaatatgtccgtcnnnnnnngcagtagttgcagactttgtctggacagtttgaagcataatgtcccaatttcttgcaacagaaacatt |
224 |
Q |
| |
|
|||||||||| |||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
63403 |
gacattccttgagaatatgtccgtcttgttt-gcagtaattgcagactttgtttggacagtttgaagcataatgtctcaatttcttgcaacagaaacatt |
63305 |
T |
|
| Q |
225 |
gaatagcactcatgtcatgacttcttgtctttcctcgtgccacataagccactggaacagtagacactttttgatcttcaatgatggactgtgtcagcag |
324 |
Q |
| |
|
||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
63304 |
gaacagcacccatgtcatgacttcttgtctttcctcgtgccacataagccactggaacagaagacactttttgatcttcaatgatggactgtctcagcag |
63205 |
T |
|
| Q |
325 |
acgttgttcttcacgtaacagatcattgaaacatgcatccaatgatggtacagggtttctatacatgagattggaccgaataccttcaaattcagatctc |
424 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
63204 |
acgttgttcttcacgtaatagatcattgaaacatgcatccaatgatggtacagggtttctatgcatgagattggaccgaataccttcaaattcagatctc |
63105 |
T |
|
| Q |
425 |
aatttcataagaaattaatctcgcttggtagtttcatgaacagattgtacagaacttaaaccttcagaagttaagtctgcataaactatctcagtatatt |
524 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
63104 |
aatttcataagaaattgatctcgcttggtagtttcatgaacagattgtacagaacttagaccttcagaagtcaagtctgcataaactatctcagtatatt |
63005 |
T |
|
| Q |
525 |
cagcccaaagattcatgaattgatagtaaaattcagagatggagagactatcctgtttaaataaggctatgtcgtgttcaagctggaatcttcgagcagc |
624 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| || |
|
|
| T |
63004 |
cagcccaaagattcatgaattgagagtaaaattcagagatggagagactatcctgtttaaacaaagctatgtcgtgttcaagctggaatcttcgagcggc |
62905 |
T |
|
| Q |
625 |
gttgttctgattgtagactttcttcaagtaatcccacattgtggctgctgttttgtaaggtcggagattcaagacaatgtttggatcaacagaacctagg |
724 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
62904 |
gttgttctgattgtagactttcttcaagtaattccacattgtggctgctgtttcgtaaggtcggagattcaggacaatgtttggatcaacagagcctagg |
62805 |
T |
|
| Q |
725 |
acccaggacatgacttgagcatctttgactacccatttggcaggtgtaaccttatctttctctttgtcaggaactggagtgctgccatcaacatgacccc |
824 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
62804 |
acccaggacatgacttgagcatctttgactacccatttggcatgtgcaaccttatctttctctttgtcaggaaatggggtgctgccatcaacatgacccc |
62705 |
T |
|
| Q |
825 |
acaaatcttttcccgtgacaaatatctcgaaatggaatgcccaagttgagtagtttttgccattaaggcgaaccaccaagatttcatgcttttcggtaga |
924 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
62704 |
acaaatcttttcctgtgacaaatatctcgaaatggaatgcccaagttgagtagtttttgccattaaggcgaaccaccaagatttcatttttttcggtaga |
62605 |
T |
|
| Q |
925 |
catgtgactatgaaaataggtattgaacaagaatgagaggttaatctggactgggaaacgaataaccgagacacagaagtgaaaagaaaagaaaaacaga |
1024 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||| | ||||||||| |
|
|
| T |
62604 |
catgtgactatggaaataggtattgaaca------agaggttaatctggactgggaaacgaataactgagacaccgaagtgaaaagaata-aaaaacaga |
62512 |
T |
|
| Q |
1025 |
ctaggttcttggattgtaacctaggctgataccatgttagactcaaagaaactaagaaatgagggatgtttaaactcagagagactaagagaaatgaggg |
1124 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
62511 |
ctaggttcttggtttgtaacctaggctgataccatgttaaactca--------gagaaatgagggat-attaaactcagagagactaagagaaatgaggg |
62421 |
T |
|
| Q |
1125 |
tcaaaactgtgtccctcttcattctgatttctcatataaatacaatgcaattacaagctttcaagttgactttcaacccactaaattagctaaactgaca |
1224 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||||||||||||||||| | ||||||| | |||||||||||||||||||||||||||||||||||| || |
|
|
| T |
62420 |
tcaaaactgtatcccccttcattctgatttctcatataaatacaatgtatttacaagttgccaagttgactttcaacccactaaattagctaaactggca |
62321 |
T |
|
| Q |
1225 |
tatatacatttacagctaattatgctaattgattgaatgattattt |
1270 |
Q |
| |
|
| |||| ||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
62320 |
tgtatatatttacagctaattatgctaattgaaaggatgattattt |
62275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 128; E-Value: 2e-65
Query Start/End: Original strand, 1079 - 1270
Target Start/End: Complemental strand, 66893 - 66703
Alignment:
| Q |
1079 |
agaaatgagggatgtttaaactcagagagactaagagaaatgagggtcaaaactgtgtccctcttcattctgatttctcatataaatacaatgcaattac |
1178 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| | |||| |
|
|
| T |
66893 |
agaaatgagggatatt-aaactcagagagactaagagaaatgagggtcaaaactgtatcccccttcattctgatttctcatataaatacaatgtatttac |
66795 |
T |
|
| Q |
1179 |
aagctttcaagttgactttcaacccactaaattagctaaactgacatatatacatttacagctaattatgctaattgattgaatgattattt |
1270 |
Q |
| |
|
||| | |||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
66794 |
aagttgccaagttgactttcaacccactaaattagctaaactgacgtgtatatatttacagctaattatgctaattgaaaggatgattattt |
66703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 90; E-Value: 7e-43
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 63553 - 63424
Alignment:
| Q |
1 |
aaatgatcatttgttgaaccatttcaggggtcactgatgaagcagtaggagcattttgctgaaccggtgctggattgaccgagttgctaggaataaatga |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||| |||| | |||||||||| |||||||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
63553 |
aaatgatcatttgttgaaccgtttcaggggtgactgttgaactactaggagcattctgctgaaccggtgctggattgatcgagttgctaggaatagatga |
63454 |
T |
|
| Q |
101 |
atcaaccgaggttgtaaaggctgtgacatt |
130 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |
|
|
| T |
63453 |
atcaaccgagcttgtaaaggctgtgacatt |
63424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 516 - 581
Target Start/End: Original strand, 5882239 - 5882304
Alignment:
| Q |
516 |
cagtatattcagcccaaagattcatgaattgatagtaaaattcagagatggagagactatcctgtt |
581 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| | || |||||||| || || ||||| ||||||| |
|
|
| T |
5882239 |
cagtatattcagcccaaagattcatgaaatgagaatagaattcagaaattgaaagactttcctgtt |
5882304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 382 - 465
Target Start/End: Original strand, 5882105 - 5882188
Alignment:
| Q |
382 |
tctatacatgagattggaccgaataccttcaaattcagatctcaatttcataagaaattaatctcgcttggtagtttcatgaac |
465 |
Q |
| |
|
||||| ||||||||| | ||||| || ||||| ||||||||||||||||||||||||| ||||| || || || |||||||| |
|
|
| T |
5882105 |
tctattcatgagattagttcgaatgccctcaaaatcagatctcaatttcataagaaattggtctcgttttgtggtctcatgaac |
5882188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 785; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 785; E-Value: 0
Query Start/End: Original strand, 162 - 1270
Target Start/End: Complemental strand, 19918439 - 19917326
Alignment:
| Q |
162 |
agttgcagactttgtctggacagtttgaagcataatgtcccaatttcttgcaacagaaacattgaatagcactcatgtcatgacttcttgtctttcctcg |
261 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||| |
|
|
| T |
19918439 |
agttgcagactttgtttgg----tttgaagcataatgtcccaatttcttgcaacagaaacattgaaaatcactcatgtcatgactttttgtctttcctcg |
19918344 |
T |
|
| Q |
262 |
tgccacataagccactggaacagtagacactttttgatcttcaatgatggactgtgtcagcagacgttgttcttcacgtaacagatcattgaaacatgca |
361 |
Q |
| |
|
|||||||||||||||| ||||||||| || |||||||||||||||||||| ||||| || ||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
19918343 |
tgccacataagccactagaacagtaggcaacttttgatcttcaatgatggattgtgttagtagacgttgttcttcatgtaacagatcattgaaacatgca |
19918244 |
T |
|
| Q |
362 |
tccaatgatggtacagggtttctatacatgagattggaccgaataccttcaaattcagatctcaatttcataagaaattaatctcgcttggtagtttcat |
461 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| ||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
19918243 |
tccaatgatggtacagggtttctatgcatgagattgaaccaaatacattcaaattcagatctcaatttcataagaaattgatctcgcttggtagtttcat |
19918144 |
T |
|
| Q |
462 |
gaacagattgtacagaacttaaaccttcagaagttaagtctgcataaactatctcagtatattcagcccaaagattcatgaattgatagtaaaattcaga |
561 |
Q |
| |
|
|||||||||| | |||||||| |||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
19918143 |
gaacagattgcaaagaacttagaccttcagaagtcaagtctgcatacactatttcagtatattcagcccaaagatttatgaattgagagtaaaattcaga |
19918044 |
T |
|
| Q |
562 |
gatggagagactatcctgtttaaataaggctatgtcgtgttcaagctggaatcttcgagcagcgttgttctgattgtagactttcttcaagtaatcccac |
661 |
Q |
| |
|
| || |||||||||| ||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
19918043 |
gttgaagagactatcatgtttaaataaggatttgtcgtgttcaagctggaatcttcgagcggcgttgttctgattgtaaactttcttcaagtaattccac |
19917944 |
T |
|
| Q |
662 |
attgtggctgctgttttgtaaggtcggagattcaagacaatgtttggatcaacagaacctaggacccaggacatgacttgagcatctttgactacccatt |
761 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
19917943 |
attgtggctgctgttttgtaagctcgcagattcaggacaatgtttggatcaacagaacctaggacccaagacatgacttgagcatctttgactacccatt |
19917844 |
T |
|
| Q |
762 |
tggcaggtgtaaccttatctttctctttgtcaggaactggagtgctgccatcaacatgaccccacaaatcttttcccgtgacaaatatctcgaaatggaa |
861 |
Q |
| |
|
||||| ||| |||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
19917843 |
tggcatgtgcaaccttatttttctctttctcaggaactggagtgctaccatcaacatgaccccacaaatcttttcctgtgacaaatatctcgaaatggaa |
19917744 |
T |
|
| Q |
862 |
tgcccaagttgagtagtttttgccattaaggcgaaccaccaagatttcatgcttttcggtagacatgtgactatgaaaataggtattgaacaagaatgag |
961 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| | |
|
|
| T |
19917743 |
tgcccaagttgagtagtttttgcaattaaggcgaaccaccaagatttcatgtttttcggtagacatgtgactatggaaataggtattgaacaagaatgtg |
19917644 |
T |
|
| Q |
962 |
aggttaatctggactgggaaacgaataaccgagacacagaagtgaaaaga------aaagaaaaacagactaggttcttggattgtaacctaggctgata |
1055 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||||||| ||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19917643 |
aggttaatctggactaggaaacgaataactgagacacataagggaaaagaagaaggaaaaaaaaacagactaggttcttggattgtaacctaggctgata |
19917544 |
T |
|
| Q |
1056 |
ccatgttagactcaaagaaacta--agaaatgagggatgtttaaactcagagagactaagagaaatgagggtc--aaaactgtgtccctcttcattctga |
1151 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||| ||| |||||| | ||||||||||||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
19917543 |
ccatgttagactcagagaaactaagagaaatgaggaatg-ttaaacaaaaagagactaagagaaatgagggtcaaaaaaccgtgtccctcttcattctga |
19917445 |
T |
|
| Q |
1152 |
tttctcatataaatacaatgcaattacaagctttcaagttgactttcaacccactaaattagctaaactgacatatatacatttacagctaattatgcta |
1251 |
Q |
| |
|
||||| |||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
19917444 |
tttctgatataaatacaatgtatttacaagctgtcaagttgactttcaacccactaaattagctaaactgacatatgtatatttacagctaattatgcta |
19917345 |
T |
|
| Q |
1252 |
attgattgaatgattattt |
1270 |
Q |
| |
|
||||| |||||||||||| |
|
|
| T |
19917344 |
attgaaagaatgattattt |
19917326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 1059 - 1270
Target Start/End: Complemental strand, 19921955 - 19921741
Alignment:
| Q |
1059 |
tgttagactcaaagaaactaagaaa--tgagggatgtttaaactcagagagactaagagaaatgagggtcaaaa--ctgtgtccctcttcattctgattt |
1154 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||| |||| |
|
|
| T |
19921955 |
tgttagactcagagaaactaagaaaaatgagggatgtt-aaactcatagagactaagagaaatgagggtcaaaaaactgtgtccctcctcattctaattt |
19921857 |
T |
|
| Q |
1155 |
ctcatataaatacaatgcaattacaagctttcaagttgactttcaacccactaaattagctaaactgacatatatacatttacagctaattatgctaatt |
1254 |
Q |
| |
|
|| |||| | | ||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
19921856 |
ctgatatcagtgcaatgtatttacaagctgtcaagttgactttcaacccactaaattagctaaactgacatatgtatatttacagctaattatgctaatt |
19921757 |
T |
|
| Q |
1255 |
gattgaatgattattt |
1270 |
Q |
| |
|
|| |||||||||||| |
|
|
| T |
19921756 |
gaaagaatgattattt |
19921741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 98; E-Value: 1e-47
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 19918625 - 19918496
Alignment:
| Q |
1 |
aaatgatcatttgttgaaccatttcaggggtcactgatgaagcagtaggagcattttgctgaaccggtgctggattgaccgagttgctaggaataaatga |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||| |
|
|
| T |
19918625 |
aaatgaccatttgttgaaccatttcaggggtcaccgttgaagtagtaggagcattttgctgaaccggtgttggtttgaccgagttgctaggaatagatga |
19918526 |
T |
|
| Q |
101 |
atcaaccgaggttgtaaaggctgtgacatt |
130 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |
|
|
| T |
19918525 |
atcaactgaggttgtaaaggctgtgacatt |
19918496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 760; Significance: 0; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 760; E-Value: 0
Query Start/End: Original strand, 157 - 1063
Target Start/End: Complemental strand, 11291181 - 11290282
Alignment:
| Q |
157 |
gcagtagttgcagactttgtctggacagtttgaagcataatgtcccaatttcttgcaacagaaacattgaatagcactcatgtcatgacttcttgtcttt |
256 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
11291181 |
gcagtaattgcagactttgtttggacagtttgaagcataatgtcccaatttcttgcaacagaaacattgaacagcactcatgtcatgacttcttgtcttt |
11291082 |
T |
|
| Q |
257 |
cctcgtgccacataagccactggaacagtagacactttttgatcttcaatgatggactgtgtcagcagacgttgttcttcacgtaacagatcattgaaac |
356 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||| |
|
|
| T |
11291081 |
cctcgtgccacataagccactggaacagaagacactttttgatcttcaatgatggactgtgtcagcagacattgtccttcacgtaatagatcattgaaac |
11290982 |
T |
|
| Q |
357 |
atgcatccaatgatggtacagggtttctatacatgagattggaccgaataccttcaaattcagatctcaatttcataagaaattaatctcgcttggtagt |
456 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
11290981 |
atgcatccaatgatggtacagggtttctatgcatgagattggaccgaataccttcaaattcagatctcaatttcataagaaattgatctcgcttggtagt |
11290882 |
T |
|
| Q |
457 |
ttcatgaacagattgtacagaacttaaaccttcagaagttaagtctgcataaactatctcagtatattcagcccaaagattcatgaattgatagtaaaat |
556 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
11290881 |
ttcatgaacagattgtacagaacttagaccttcagaagtcaagtctgcataaactatctcagtatattcagcccaaagattcatgaattgagagtaaaat |
11290782 |
T |
|
| Q |
557 |
tcagagatggagagactatcctgtttaaataaggctatgtcgtgttcaagctggaatcttcgagcagcgttgttctgattgtagactttcttcaagtaat |
656 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
11290781 |
tcagagatggagagactatcctgtttaaacaaagctatgtcgtgttcaagctggaatcttcaagcggcgttgttctgattgtagactttcttcaagtaat |
11290682 |
T |
|
| Q |
657 |
cccacattgtggctgctgttttgtaaggtcggagattcaagacaatgtttggatcaacagaacctaggacccaggacatgacttgagcatctttgactac |
756 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11290681 |
tccacattgtggctgctgttttgtaaggtcggagattcaggacaatgtttggatcaacagagcctaggacccaggacatgacttgagcatctttgactac |
11290582 |
T |
|
| Q |
757 |
ccatttggcaggtgtaaccttatctttctctttgtcaggaactggagtgctgccatcaacatgaccccacaaatcttttcccgtgacaaatatctcgaaa |
856 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
11290581 |
ccatttggcatgtgcaaccttatctttctctttgtcaggaaatggggtgctgccatcaacatgaccccacaaatcttttcctgtgacaaatatctcgaaa |
11290482 |
T |
|
| Q |
857 |
tggaatgcccaagttgagtagtttttgccattaaggcgaaccaccaagatttcatgcttttcggtagacatgtgactatgaaaataggtattgaacaaga |
956 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
11290481 |
tggaatgcccaagttgagtagtttttgccattaaggcgaaccaccaagatttcatgtttttcggtagacatgtgactatggaaataggtattgaaca--- |
11290385 |
T |
|
| Q |
957 |
atgagaggttaatctggactgggaaacgaataaccgagacacagaagtgaaaagaaaagaaaaacagactaggttcttggattgtaacctaggctgatac |
1056 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
11290384 |
---agaggttaatctggactgggaaacgaataactgagacacagaagtgaaaagaata-aaaaacagactaggttcttggtttgtaacctaggctgatac |
11290289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 157 - 999
Target Start/End: Original strand, 44875054 - 44875854
Alignment:
| Q |
157 |
gcagtagttgcagactttgtctggacagtttgaagcataatgtcccaatttcttgcaacagaaacattgaatagcactcatgtcatgacttcttgtcttt |
256 |
Q |
| |
|
|||||||||||||||||| | ||| |||||||||||||||||||||||| |||| |||||||||| | ||| |||||||||||||||| |||| |
|
|
| T |
44875054 |
gcagtagttgcagactttatttgggcagtttgaagcataatgtcccaat-------aacataaacattgaacaacacgtatgtcatgacttcttgacttt |
44875146 |
T |
|
| Q |
257 |
cctcgtgccacataagccactggaacagtagac-actttttgatcttcaatgatggactgtgtcagcagacgttgttcttcacgtaacagatcattgaaa |
355 |
Q |
| |
|
| ||||||||| |||||||||||| | ||||| ||||||||||||||| |||||||||| |||||||||||||| ||| || | ||||||| |
|
|
| T |
44875147 |
catcgtgccac---------tggaacagtagatgatttttttatcttcaatgatggattgtgtcagcatacgttgttcttcacataataggttattgaaa |
44875237 |
T |
|
| Q |
356 |
catgcatccaatgatggtacagggtttctatacatgagattggaccgaataccttcaaattcagatctcaatttcataagaaattaatctcgcttggtag |
455 |
Q |
| |
|
||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
44875238 |
catgcatccaaagatggtacaaggtttctatgcatgagattggaccgaataccttcaaatttagatctcaatttcataagaaattgatctcgcttagtag |
44875337 |
T |
|
| Q |
456 |
tttcatgaacagattgtacagaacttaaaccttcagaagttaagtctgcataaactatctcagtatattcagcccaaagattcatgaattgatagtaaaa |
555 |
Q |
| |
|
||||||||||| |||||||| |||||| ||||||| |||| ||||||||||||||||| || ||||||||||||||||||| |||||| ||||||| |
|
|
| T |
44875338 |
tttcatgaacatattgtacataacttagaccttcataagtcaagtctgcataaactatatc-----attcagcccaaagattcattaattgagagtaaaa |
44875432 |
T |
|
| Q |
556 |
ttcagagatggagagactatcctgtttaaataaggctatgtcgtgttcaagctggaatcttcgagcagcgttg-ttctgattgtagactttcttcaagta |
654 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||| ||||||||||||||| || |||||||| ||| |||||| || ||||||||||||||||||||||| |
|
|
| T |
44875433 |
ttcaaagatggagggactatcctgtttaaataaatctatgtcgtgttcaacctagaatcttctagcggcgttgtttttgattgtagactttcttcaagta |
44875532 |
T |
|
| Q |
655 |
atcccacattgtggctgctgttttgtaaggtcggagattcaagacaatgtttggatcaacagaacctaggacccaggacatgacttgagcatctttgact |
754 |
Q |
| |
|
|| | ||||||||||||||||||||||||| | ||||||| ||||||||| ||| ||||| |||| |||||||| |||||||||||| ||||||||||| |
|
|
| T |
44875533 |
attctacattgtggctgctgttttgtaagggtgaagattcaggacaatgttgggaacaacataaccaaggacccatgacatgacttgaccatctttgact |
44875632 |
T |
|
| Q |
755 |
acccatttggcaggtg-taaccttatctttctctttgtcaggaactggagtgctgccatcaacatgaccccacaaatcttttcccgtgacaaatatctcg |
853 |
Q |
| |
|
|||||||||||| ||| ||||||||||| ||| ||||||| |||||| |||||||| |||||||||| ||| || |||||||| | | |
|
|
| T |
44875633 |
acccatttggcatgtgcaaaccttatctt------------gaaatggagtgttgccattgacatgacctcacaaatcttatcctgtaacaaatatgttg |
44875720 |
T |
|
| Q |
854 |
aaatggaatgcccaagttgagtagtttttgccattaaggcgaaccaccaagatttcatgcttttcggtagacatgtgactatgaaaataggtattgaaca |
953 |
Q |
| |
|
|||| ||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
44875721 |
aaattgaatgcccaagttgaataatttttgccattaaggcgaaccaccaagatttcaagcttttcggtagacatgtgac------------tattgaaca |
44875808 |
T |
|
| Q |
954 |
agaatgagaggttaatctggactgggaaacgaataaccgagacaca |
999 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
44875809 |
agaatgagagattaatctggactgggaaacaaataatcgagacaca |
44875854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 205; E-Value: 1e-111
Query Start/End: Original strand, 1058 - 1270
Target Start/End: Original strand, 53041641 - 53041853
Alignment:
| Q |
1058 |
atgttagactcaaagaaactaagaaatgagggatgtttaaactcagagagactaagagaaatgagggtcaaaactgtgtccctcttcattctgatttctc |
1157 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53041641 |
atgttagactcaaagaaactaagaaatgagggatgtttaaactcagagagactaagagaaatgagggtcaaaactgtgtccctcttcattctgatttctc |
53041740 |
T |
|
| Q |
1158 |
atataaatacaatgcaattacaagctttcaagttgactttcaacccactaaattagctaaactgacatatatacatttacagctaattatgctaattgat |
1257 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53041741 |
atataaatacaatgcaattacaagctttcaagttgactttcaacccaataaattagctaaactgacatatatacatttacagctaattatgctaattgat |
53041840 |
T |
|
| Q |
1258 |
tgaatgattattt |
1270 |
Q |
| |
|
|||||||||||| |
|
|
| T |
53041841 |
agaatgattattt |
53041853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 146; E-Value: 3e-76
Query Start/End: Original strand, 1060 - 1266
Target Start/End: Original strand, 19291857 - 19292064
Alignment:
| Q |
1060 |
gttagactcaaagaaactaaga--aatgagggatgtttaaactcagagagactaagagaaatgagggtcaaaactgtgtccctcttcattctgatttctc |
1157 |
Q |
| |
|
|||||||||| ||||||||||| ||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19291857 |
gttagactcagagaaactaagagaaattagggatgtt-aaactcagagagaccaagagaaatgagggtcaaaactgtgtccctcttcattctgatttctc |
19291955 |
T |
|
| Q |
1158 |
atataaatacaatgcaattacaagctttcaagttgactttcaacccactaaattagctaaactgacatatatacatttacagctaattatgctaattgat |
1257 |
Q |
| |
|
||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
19291956 |
gtataaatacaatgtatttacaagctgtcaagttgactttcaacccactaaattagctaaactgacatatgtatatttacagctaattatgctaattgaa |
19292055 |
T |
|
| Q |
1258 |
tgaatgatt |
1266 |
Q |
| |
|
|||||||| |
|
|
| T |
19292056 |
agaatgatt |
19292064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 109; E-Value: 3e-54
Query Start/End: Original strand, 1079 - 1270
Target Start/End: Complemental strand, 11294715 - 11294527
Alignment:
| Q |
1079 |
agaaatgagggatgtttaaactcagagagactaagagaaatgagggtcaaaactgtgtccctcttcattctgatttctcatataaatacaatgcaattac |
1178 |
Q |
| |
|
||||||||||||| || ||||||| ||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||||| | |||| |
|
|
| T |
11294715 |
agaaatgagggatatt-aaactcaaagagactaaga--aatgagggtcaaaactgtatcccccttcattctgatttctcatataaatacaatctatttac |
11294619 |
T |
|
| Q |
1179 |
aagctttcaagttgactttcaacccactaaattagctaaactgacatatatacatttacagctaattatgctaattgattgaatgattattt |
1270 |
Q |
| |
|
||| | |||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
11294618 |
aagttgccaagttgactttcaacccactaaattagctaaactgacgtgtatatatttacagctaattatgctaattgaaaggatgattattt |
11294527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 94; E-Value: 3e-45
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 11291362 - 11291233
Alignment:
| Q |
1 |
aaatgatcatttgttgaaccatttcaggggtcactgatgaagcagtaggagcattttgctgaaccggtgctggattgaccgagttgctaggaataaatga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |||| | |||||||||| |||||||| ||||||||||||| |||||||||||||||| |||| |
|
|
| T |
11291362 |
aaatgatcatttgttgaaccatttcaggggtgactgttgaactactaggagcattctgctgaactggtgctggattgatcgagttgctaggaatagatga |
11291263 |
T |
|
| Q |
101 |
atcaaccgaggttgtaaaggctgtgacatt |
130 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
11291262 |
atcaaccgaggttgtaaaggctgtgacatt |
11291233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 71; E-Value: 2e-31
Query Start/End: Original strand, 701 - 989
Target Start/End: Original strand, 55923515 - 55923804
Alignment:
| Q |
701 |
atgtttggatcaacagaacctaggacccaggacatgacttgagcatctttgactacccatttggcaggtgtaaccttatctttctctttgtcaggaactg |
800 |
Q |
| |
|
||||| ||||||| | ||||| ||||||| ||||||||||||||||||||||||||||||||| || | | ||| ||||| ||||| | || || || |
|
|
| T |
55923515 |
atgttaggatcaatataaccttggacccatgacatgacttgagcatctttgactacccatttgacatgggcaacattatccgtctctat--caaaaaatg |
55923612 |
T |
|
| Q |
801 |
gagtgctgccatcaacatgaccc---cacaaatcttttcccgtgacaaatatctcgaaatggaatgcccaagttgagtagtttttgccattaaggcgaac |
897 |
Q |
| |
|
||||||||||||| ||| |||| ||||||| |||| ||||||||||||| |||||||||||||| | ||||||| | || ||||||||||||| |
|
|
| T |
55923613 |
gagtgctgccatcgacacaacccagccacaaatatttttatgtgacaaatatcttgaaatggaatgccctaactgagtagatcatgtcattaaggcgaac |
55923712 |
T |
|
| Q |
898 |
caccaagatttcatgcttttcggtagacatgtgactatgaaaataggtattgaacaagaatgagaggttaatctggactgggaaacgaataa |
989 |
Q |
| |
|
|| ||||| |||||| ||||| || |||| |||||| ||||| | ||| |||||||||||| ||||||| |||| || ||||| ||||| |
|
|
| T |
55923713 |
caacaagacttcatgtttttctataaacatagaactatgtaaataagaattaaacaagaatgaggggttaatttggattgagaaacaaataa |
55923804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 1188 - 1256
Target Start/End: Complemental strand, 15089891 - 15089823
Alignment:
| Q |
1188 |
agttgactttcaacccactaaattagctaaactgacatatatacatttacagctaattatgctaattga |
1256 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
15089891 |
agttgactttcaacccactaaattagctaaactgacatgtatatatttacagctaattatgctaattga |
15089823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 60; E-Value: 6e-25
Query Start/End: Original strand, 1094 - 1246
Target Start/End: Original strand, 44871882 - 44872026
Alignment:
| Q |
1094 |
ttaaactcagagagactaagagaaatgagggtcaaaactgtgtccctcttcattctgatttctcatataaatacaatgcaattacaagctttcaagttga |
1193 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||||||| | |||| ||||||| || |||||||||||||||||||| || | ||||||||| |
|
|
| T |
44871882 |
ttaaactcagagaaactttgagaaatgagggtcaaaactatatcccacttcattgtggtttctcatataaatacaatgtaa--------tgtcaagttga |
44871973 |
T |
|
| Q |
1194 |
ctttcaacccactaaattagctaaactgacatatatacatttacagctaatta |
1246 |
Q |
| |
|
|||||||||||| |||||||||||| || ||| |||||||||||||||||| |
|
|
| T |
44871974 |
ctttcaacccacgaaattagctaaattgttgtatgtacatttacagctaatta |
44872026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 1114 - 1167
Target Start/End: Original strand, 44876011 - 44876064
Alignment:
| Q |
1114 |
agaaatgagggtcaaaactgtgtccctcttcattctgatttctcatataaatac |
1167 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| |||||||||| |||||| |
|
|
| T |
44876011 |
agaaatgagggtcaaaattgtgtccctcttcattctaatttctcatacaaatac |
44876064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 130
Target Start/End: Original strand, 44874904 - 44874990
Alignment:
| Q |
44 |
agtaggagcattttgctgaaccggtgctggattgaccgagttgctaggaataaatgaatcaaccgaggttgtaaaggctgtgacatt |
130 |
Q |
| |
|
||||||||||||||| ||||||| || |||||| | || ||||||||||| ||||| ||||| ||| |||||| | ||||||||| |
|
|
| T |
44874904 |
agtaggagcattttgttgaaccgatgttggattcgctgaaatgctaggaatagatgaaccaaccaaggctgtaaaagttgtgacatt |
44874990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 744; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 744; E-Value: 0
Query Start/End: Original strand, 157 - 1075
Target Start/End: Complemental strand, 28133614 - 28132704
Alignment:
| Q |
157 |
gcagtagttgcagactttgtctggacagtttgaagcataatgtcccaatttcttgcaacagaaacattgaatagcactcatgtcatgacttcttgtcttt |
256 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
28133614 |
gcagtaattgcagactttgtttggacagtttgaagcataatgtcccaatttcttgcaacagaaacattgaacagcactcatgtcatgacttcttgtcttt |
28133515 |
T |
|
| Q |
257 |
cctcgtgccacataagccactggaacagtagacactttttgatcttcaatgatggactgtgtcagcagacgttgttcttcacgtaacagatcattgaaac |
356 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
28133514 |
cctcgtgccacataagccactggaacagaagacactttttgatcttcaatgatggactgtgtcagcagacgttgttcttcacgtaatagatcattgaaac |
28133415 |
T |
|
| Q |
357 |
atgcatccaatgatggtacagggtttctatacatgagattggaccgaataccttcaaattcagatctcaatttcataagaaattaatctcgcttggtagt |
456 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
28133414 |
atgcatccaatgatggtacagggtttctatgcatgagattggac-gaataccttcaaattcagatctcaatttcataagaaattgatctcgcttggtagt |
28133316 |
T |
|
| Q |
457 |
ttcatgaacagattgtacagaacttaaaccttcagaagttaagtctgcataaactatctcagtatattcagcccaaagattcatgaattgatagtaaaat |
556 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
28133315 |
ttcatgaacagattgtacagaacttagaccttcagaagtcaagtctgcataaactatctcagtatattcagcccaaagattcatgaattgagagtaaaat |
28133216 |
T |
|
| Q |
557 |
tcagagatggagagactatcctgtttaaataaggctatgtcgtgttcaagctggaatcttcgagcagcgttgttctgattgtagactttcttcaagtaat |
656 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
28133215 |
tcagagatggagagactatcctgtttaaacaaagctatgtcgtgttcaagctggaatcttcgagcggcgttgttctgattgtagactttcttcaagtaat |
28133116 |
T |
|
| Q |
657 |
cccacattgtggctgctgttttgtaaggtcggagattcaagacaatgtttggatcaacagaacctaggacccaggacatgacttgagcatctttgactac |
756 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
28133115 |
tccacattgtggctgctgttttgtaaggtcagagattcaggacaatgtttggatcaacagagcctaggatccaggacatgacttgagcatctttgactac |
28133016 |
T |
|
| Q |
757 |
ccatttggcaggtgtaaccttatctttctctttgtcaggaactggagtgctgccatcaacatgaccccacaaatcttttcccgtgacaaatatctcgaaa |
856 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
28133015 |
ccatttggcatgtgcaaccttatctttctctttgtcaggaaatggggtgctgccatcaacatgaccccacaaatcttttcctgtgacaaatatctcgaaa |
28132916 |
T |
|
| Q |
857 |
tggaatgcccaagttgagtagtttttgccattaaggcgaaccaccaagatttcatgcttttcggtagacatgtgactatgaaaataggtattgaacaaga |
956 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
28132915 |
tggaatggccaagttaagtagtttttgccattaaggcgaaccaccaagatttcatgtttttcggtagacatgtgactatggaaataggtatcgaaca--- |
28132819 |
T |
|
| Q |
957 |
atgagaggttaatctggactgggaaacgaataaccgagacacagaagtgaaaagaaaagaaaaacagactaggttcttggattgtaacctaggctgatac |
1056 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| |||||||||||| | ||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
28132818 |
---agaggttaatctggactgggaaacgaataactgagacacataagtgaaaagaata-aaaaacagactaggttcttggtttgtaacctaggctgatac |
28132723 |
T |
|
| Q |
1057 |
catgttagactcaaagaaa |
1075 |
Q |
| |
|
||||||| ||||| ||||| |
|
|
| T |
28132722 |
catgttaaactcagagaaa |
28132704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 2e-65
Query Start/End: Original strand, 1079 - 1270
Target Start/End: Complemental strand, 5997978 - 5997788
Alignment:
| Q |
1079 |
agaaatgagggatgtttaaactcagagagactaagagaaatgagggtcaaaactgtgtccctcttcattctgatttctcatataaatacaatgcaattac |
1178 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||| |||||||||||||| | |||| |
|
|
| T |
5997978 |
agaaatgagggatatt-aaactcagagagactaagagaaatgagggtcaaaactgtataccccttcattctgatttcttatataaatacaatgtatttac |
5997880 |
T |
|
| Q |
1179 |
aagctttcaagttgactttcaacccactaaattagctaaactgacatatatacatttacagctaattatgctaattgattgaatgattattt |
1270 |
Q |
| |
|
||| | ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
5997879 |
aagttgtcaagttgactttcaacccactaaattagctaaactgacatgtatatatttacagctaattatgctaattgaaaggatgattattt |
5997788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 115; E-Value: 9e-58
Query Start/End: Original strand, 1065 - 1270
Target Start/End: Complemental strand, 28132690 - 28132488
Alignment:
| Q |
1065 |
actcaaagaaactaagaaatgagggatgtttaaactcagagagactaagagaaatgagggtcaaaactgtgtccctcttcattctgatttctcatataaa |
1164 |
Q |
| |
|
||||| ||| ||||||||||||||||| || ||||||||||||||||||| |||||||||||||| ||| |||| |||||||||||||||||||||||| |
|
|
| T |
28132690 |
actcagagagactaagaaatgagggatatt-aaactcagagagactaaga--aatgagggtcaaaattgtatcccccttcattctgatttctcatataaa |
28132594 |
T |
|
| Q |
1165 |
tacaatgcaattacaagctttcaagttgactttcaacccactaaattagctaaactgacatatatacatttacagctaattatgctaattgattgaatga |
1264 |
Q |
| |
|
||||||| | || |||| | |||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||| | |||| |
|
|
| T |
28132593 |
tacaatgtatttgcaagttgccaagttgactttcaacccactaaattagctaaactgacgtgtatatatttacagctaattatgctaattgaaaggatga |
28132494 |
T |
|
| Q |
1265 |
ttattt |
1270 |
Q |
| |
|
|||||| |
|
|
| T |
28132493 |
ttattt |
28132488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 105; E-Value: 8e-52
Query Start/End: Original strand, 1079 - 1270
Target Start/End: Original strand, 42756212 - 42756409
Alignment:
| Q |
1079 |
agaaatgagggatgtttaaactcagagagactaagagaaatgagggtca-------aaactgtgtccctcttcattctgatttctcatataaatacaatg |
1171 |
Q |
| |
|
||||||||||||| || ||||||| |||||| ||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
42756212 |
agaaatgagggatatt-aaactcaaagagaccaagagaaatgagggtcaaaagtcaaaactgtatcccgcttcattctgatttctcatataaatacaatg |
42756310 |
T |
|
| Q |
1172 |
caattacaagctttcaagttgactttcaacccactaaattagctaaactgacatatatacatttacagctaattatgctaattgattgaatgattattt |
1270 |
Q |
| |
|
| ||||||| | |||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
42756311 |
tatttacaagttgtcaagttgactttcaacccactaaattagcaaaactgacatgtatatatttacagctaattatgctaattgaaaggatgattattt |
42756409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 1114 - 1270
Target Start/End: Complemental strand, 28162870 - 28162714
Alignment:
| Q |
1114 |
agaaatgagggtcaaaactgtgtccctcttcattctgatttctcatataaatacaatgcaattacaagctttcaagttgactttcaacccactaaattag |
1213 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| | ||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
28162870 |
agaaatgagggtcaaaactgtatcccccttcattctgatttctcatataaatacaatgtatttacaagttgccaagttgactttcaacccactaaattag |
28162771 |
T |
|
| Q |
1214 |
ctaaactgacatatatacatttacagctaattatgctaattgattgaatgattattt |
1270 |
Q |
| |
|
|||||||||| | |||| ||||||| ||||||||||||||||| | |||||||||| |
|
|
| T |
28162770 |
ctaaactgacgtgtatatatttacaactaattatgctaattgaaaggatgattattt |
28162714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 88; E-Value: 1e-41
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 28133795 - 28133672
Alignment:
| Q |
1 |
aaatgatcatttgttgaaccatttcaggggtcactgatgaagcagtaggagcattttgctgaaccggtgctggattgaccgagttgctaggaataaatga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |||| | |||||||||| |||||||| ||||||||||||| |||||||||||||||| |||| |
|
|
| T |
28133795 |
aaatgatcatttgttgaaccatttcaggggtgactgttgaactactaggagcattctgctgaactggtgctggattgatcgagttgctaggaatagatga |
28133696 |
T |
|
| Q |
101 |
atcaaccgaggttgtaaaggctgt |
124 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
28133695 |
atcaaccgaggttgtaaaggctgt |
28133672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 1059 - 1132
Target Start/End: Original strand, 25893271 - 25893345
Alignment:
| Q |
1059 |
tgttagactcaaagaaactaaga--aatgagggatgtttaaactcagagagactaagagaaatgagggtcaaaact |
1132 |
Q |
| |
|
|||||||||| ||||||||||| ||||| |||| || ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25893271 |
tgttagactcggagaaactaagagcaatgaaggatatt-aaactcagagagactaagagaaatgagggtcaaaact |
25893345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1506 (Bit Score: 649; Significance: 0; HSPs: 2)
Name: scaffold1506
Description:
Target: scaffold1506; HSP #1
Raw Score: 649; E-Value: 0
Query Start/End: Original strand, 125 - 911
Target Start/End: Original strand, 936 - 1721
Alignment:
| Q |
125 |
gacattccttcagaatatgtccgtcnnnnnnngcagtagttgcagactttgtctggacagtttgaagcataatgtcccaatttcttgcaacagaaacatt |
224 |
Q |
| |
|
|||||||||| |||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
936 |
gacattccttgagaatatgtccgtcttgttt-gcagtaattgcagactttgtttggacagtttgaagcataatgtctcaatttcttgcaacagaaacatt |
1034 |
T |
|
| Q |
225 |
gaatagcactcatgtcatgacttcttgtctttcctcgtgccacataagccactggaacagtagacactttttgatcttcaatgatggactgtgtcagcag |
324 |
Q |
| |
|
||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
1035 |
gaacagcacccatgtcatgacttcttgtctttcctcgtgccacataagccactggaacagaagacactttttgatcttcaatgatggactgtctcagcag |
1134 |
T |
|
| Q |
325 |
acgttgttcttcacgtaacagatcattgaaacatgcatccaatgatggtacagggtttctatacatgagattggaccgaataccttcaaattcagatctc |
424 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1135 |
acgttgttcttcacgtaatagatcattgaaacatgcatccaatgatggtacagggtttctatgcatgagattggaccgaataccttcaaattcagatctc |
1234 |
T |
|
| Q |
425 |
aatttcataagaaattaatctcgcttggtagtttcatgaacagattgtacagaacttaaaccttcagaagttaagtctgcataaactatctcagtatatt |
524 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
1235 |
aatttcataagaaattgatctcgcttggtagtttcatgaacagattgtacagaacttagaccttcagaagtcaagtctgcataaactatctcagtatatt |
1334 |
T |
|
| Q |
525 |
cagcccaaagattcatgaattgatagtaaaattcagagatggagagactatcctgtttaaataaggctatgtcgtgttcaagctggaatcttcgagcagc |
624 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| ||| || |
|
|
| T |
1335 |
cagcccaaagattcatgaattgagagtaaaattcagagatggagagactatcctgtttaaacaaagctatgtcgtgttcaagctggaatcttcaagcggc |
1434 |
T |
|
| Q |
625 |
gttgttctgattgtagactttcttcaagtaatcccacattgtggctgctgttttgtaaggtcggagattcaagacaatgtttggatcaacagaacctagg |
724 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
1435 |
gttgttctgattgtagactttcttcaagtaattccacattgtggctgctgtttagtaaggtcggagattcaggacaatgtttggatcaacagagcctagg |
1534 |
T |
|
| Q |
725 |
acccaggacatgacttgagcatctttgactacccatttggcaggtgtaaccttatctttctctttgtcaggaactggagtgctgccatcaacatgacccc |
824 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
1535 |
aaccaggacatgacttgagcatctttgactacccatttggcatgtgcaaccttatctttctctttgtcaggaaatggggtgctgccatcaacatgacccc |
1634 |
T |
|
| Q |
825 |
acaaatcttttcccgtgacaaatatctcgaaatggaatgcccaagttgagtagtttttgccattaaggcgaaccaccaagatttcat |
911 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1635 |
acaaatcttttcctgtgacaaatatctcgaaatggaatgcccaagttgagtagtttttgccattaaggcgaaccaccaagatttcat |
1721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1506; HSP #2
Raw Score: 94; E-Value: 3e-45
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 786 - 915
Alignment:
| Q |
1 |
aaatgatcatttgttgaaccatttcaggggtcactgatgaagcagtaggagcattttgctgaaccggtgctggattgaccgagttgctaggaataaatga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |||| | |||||||||| |||||||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
786 |
aaatgatcatttgttgaaccatttcaggggtgactgttgaactactaggagcattctgctgaaccggtgctggattgatcgagttgctaggaatagatga |
885 |
T |
|
| Q |
101 |
atcaaccgaggttgtaaaggctgtgacatt |
130 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |
|
|
| T |
886 |
atcaaccgagcttgtaaaggctgtgacatt |
915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 153; Significance: 2e-80; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 153; E-Value: 2e-80
Query Start/End: Original strand, 1098 - 1270
Target Start/End: Complemental strand, 21535245 - 21535073
Alignment:
| Q |
1098 |
actcagagagactaagagaaatgagggtcaaaactgtgtccctcttcattctgatttctcatataaatacaatgcaattacaagctttcaagttgacttt |
1197 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
21535245 |
actcagagaaactaagagaaatgagggtcaaaactgcgtccctcttcattctgatttctcatataaatacaatgcaattacaggctttcaagttgacttt |
21535146 |
T |
|
| Q |
1198 |
caacccactaaattagctaaactgacatatatacatttacagctaattatgctaattgattgaatgattattt |
1270 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
21535145 |
caacccactaaattagctaaactggcatatatacatttacagctaattatgctaattgatagaatgattattt |
21535073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0254 (Bit Score: 122; Significance: 6e-62; HSPs: 1)
Name: scaffold0254
Description:
Target: scaffold0254; HSP #1
Raw Score: 122; E-Value: 6e-62
Query Start/End: Original strand, 1081 - 1270
Target Start/End: Complemental strand, 984 - 796
Alignment:
| Q |
1081 |
aaatgagggatgtttaaactcagagagactaagagaaatgagggtcaaaactgtgtccctcttcattctgatttctcatataaatacaatgcaattacaa |
1180 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||| | |||||| |
|
|
| T |
984 |
aaatgagggatatt-aaactcagagagactaagagaaatgagggtcaaaactgtatcctcctttattctgatttctcatataaatacaatatatttacaa |
886 |
T |
|
| Q |
1181 |
gctttcaagttgactttcaacccactaaattagctaaactgacatatatacatttacagctaattatgctaattgattgaatgattattt |
1270 |
Q |
| |
|
| | ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
885 |
gttgtcaagttgactttcaacccactaaattagctaaactgacatgtatatatttacagctaattatgctaattgaaaggatgattattt |
796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0394 (Bit Score: 114; Significance: 3e-57; HSPs: 1)
Name: scaffold0394
Description:
Target: scaffold0394; HSP #1
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 1081 - 1270
Target Start/End: Complemental strand, 929 - 741
Alignment:
| Q |
1081 |
aaatgagggatgtttaaactcagagagactaagagaaatgagggtcaaaactgtgtccctcttcattctgatttctcatataaatacaatgcaattacaa |
1180 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||| | |||||| |
|
|
| T |
929 |
aaatgagggatatt-aaactcagagagactaagagaaatgagggtcaaaactgtatcctcctttattctgatttctcatataaatacaatatatttacaa |
831 |
T |
|
| Q |
1181 |
gctttcaagttgactttcaacccactaaattagctaaactgacatatatacatttacagctaattatgctaattgattgaatgattattt |
1270 |
Q |
| |
|
| | ||||||||||||||||||||||||||||||||||||||| | |||| ||||||| ||||||||||||||||| | |||||||||| |
|
|
| T |
830 |
gttgtcaagttgactttcaacccactaaattagctaaactgacttgtatatatttacatctaattatgctaattgaaaggatgattattt |
741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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