View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9000_low_10 (Length: 732)
Name: NF9000_low_10
Description: NF9000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9000_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 670; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 670; E-Value: 0
Query Start/End: Original strand, 19 - 715
Target Start/End: Original strand, 4132788 - 4133485
Alignment:
| Q |
19 |
ataaagagaaataatccaatagtcagagcacaaatattcccaatcgtttctgcactctgctgagaaagacatcaacgtgctgcgccagaatacaagaccg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |
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| T |
4132788 |
ataaagagaaataatccaatagtcagagcacaaatattcccaatcgtttctgcactctgctgagaaagacatcaacatgctgcgccaaaatacaagaccg |
4132887 |
T |
|
| Q |
119 |
caaaatagcatagttatacacaccaaaactttatagcgacctttgaattacactccacacagataacaccaagatgcatttccaatttcttgtatatccc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4132888 |
caaaatagcatagttatacacaccaaaactttatagcgacctttgaattacactccacacagataacaccaagatgcatttccaatttcttgtatatccc |
4132987 |
T |
|
| Q |
219 |
ttgttgctaattccacaaatctggaagcaacatatgttgcaacggtttagatagccacaccatcagacccttccgattcaaattttactgctactaacca |
318 |
Q |
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| T |
4132988 |
ttgttgctaattccacaaatctggaagcaacatatgttgcaatggtttagatagccacaccatcagacccttccgattcaaattttactgctactaacca |
4133087 |
T |
|
| Q |
319 |
attagttcctcacatcagtccacttccacaacaccttctagctaataacaacttgacactttgataatattaccacacgcctttcgatagttcataaacc |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4133088 |
attagttcctcacatcagtccacttccacaacaccttctagctaataacaacttgacactttgataatattaccacacgcctttcgatagttcataaacc |
4133187 |
T |
|
| Q |
419 |
aatac-aattcatggcttatccacagaccgctcatttacaagctttctaccatttgttacaatacctgaaaggtcccggtcaaggcattccttttccatc |
517 |
Q |
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| T |
4133188 |
aatacaaattcatggcttatccacagaccgctcatttacaagctttctaccatttgttacaatacctgaaaggtcccggtcaaggcattccttttccatc |
4133287 |
T |
|
| Q |
518 |
tttctaatctctcaaagttaccgcctatatagatgtggattggggcagctgccaagtttctaaaaaatacacaaccgattatggcatatttcttggtgac |
617 |
Q |
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|||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4133288 |
tttctaatctctcaaagttaccgcctatgtagacgtggattggggcagctgccaagtttctaaaaaatacacaaccgattatggcatatttcttggtgac |
4133387 |
T |
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| Q |
618 |
tccttgatagattggaaattgaagaagcaagctattgttgctcgctctttagcagaggctgaatacattgccatttctgccttcacatctgagttatt |
715 |
Q |
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| T |
4133388 |
tccttgatagattggaaattgaagaagcaagctattgttgctcgctctttagcagaggctgaatacattgccatttctgccttcacatctgagttatt |
4133485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 7e-17; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 620 - 713
Target Start/End: Complemental strand, 41091908 - 41091815
Alignment:
| Q |
620 |
cttgatagattggaaattgaagaagcaagctattgttgctcgctctttagcagaggctgaatacattgccatttctgccttcacatctgagtta |
713 |
Q |
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| T |
41091908 |
cttgatagcttggaaaccgaagaagtaaactattgttgctcgctcttctgcagaggctgaatagagggccattgctgccctcacatctgagtta |
41091815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 423 - 578
Target Start/End: Complemental strand, 41102145 - 41101987
Alignment:
| Q |
423 |
caattcatggcttatccacagaccgctcatttacaagctttctaccatttgttacaatacctgaaaggt---cccggtcaaggcattccttttccatctt |
519 |
Q |
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|||||||||||| |||| |||| |||||||||||| | || ||||| |||| |||||||||||| || || ||||||||||||| ||||||| || |
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| T |
41102145 |
caattcatggctcatcctaggacctctcatttacaagatgtccaccatctgttgcaatacctgaaaagtactccaggtcaaggcattctttttccagcta |
41102046 |
T |
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| Q |
520 |
tctaatctctcaaagttaccgcctatatagatgtggattggggcagctgccaagtttct |
578 |
Q |
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| T |
41102045 |
cccaatctctcaaagttactgtctatgtggacgcggattggcacagttgccaagtttct |
41101987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 622 - 715
Target Start/End: Complemental strand, 41080556 - 41080463
Alignment:
| Q |
622 |
tgatagattggaaattgaagaagcaagctattgttgctcgctctttagcagaggctgaatacattgccatttctgccttcacatctgagttatt |
715 |
Q |
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|||||| |||||||| |||||||||||| || ||||| ||| | |||||||||||||||| |||||| ||||| |||||||||||||||| |
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| T |
41080556 |
tgatagcttggaaatccaagaagcaagctcctgatgctctctcctccgcagaggctgaatacagggccattgctgccctcacatctgagttatt |
41080463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 559 - 612
Target Start/End: Complemental strand, 41091958 - 41091905
Alignment:
| Q |
559 |
ggggcagctgccaagtttctaaaaaatacacaaccgattatggcatatttcttg |
612 |
Q |
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|||| ||||||||||||||| |||||| ||||||| |||| |||||||||||| |
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| T |
41091958 |
ggggaagctgccaagtttcttaaaaattcacaaccacttattgcatatttcttg |
41091905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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