View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9000_low_12 (Length: 690)
Name: NF9000_low_12
Description: NF9000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9000_low_12 |
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| [»] scaffold0533 (3 HSPs) |
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Alignment Details
Target: scaffold0533 (Bit Score: 240; Significance: 1e-132; HSPs: 3)
Name: scaffold0533
Description:
Target: scaffold0533; HSP #1
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 8491 - 8750
Alignment:
| Q |
1 |
tataaactaatggataactaaacaattaggtaaagttatagtacaaaattaggtatttcaccaaaaagtttacaatttacaaattgtgtagtgggatata |
100 |
Q |
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| T |
8491 |
tataaactaatgaataactaaacaattaggtaaagttatagtacaaaattaggtatttcaccaaaaagtttacaatttacaaattgcgtagtgggatata |
8590 |
T |
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| Q |
101 |
tgtgattcgtaattatacattgcactcttgaagacaaccatgcatgccaaaatacgactcaaaagacgtatcaaattgtggttatatataatttcactaa |
200 |
Q |
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| T |
8591 |
tatgattcgtaattatacattgcactcttgaagacaacgatgcatgccaaaatacgactcaaaagacgtatcaaattgtggttatatataatttcactaa |
8690 |
T |
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| Q |
201 |
caaattgaataatgtcatgattggtttttaattaggaagaatgtaccttcactaattaaa |
260 |
Q |
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| T |
8691 |
caaattgaataatgtcatgattggtttttaattaggaagaatgtaccttcactaaataaa |
8750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0533; HSP #2
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 445 - 675
Target Start/End: Original strand, 8899 - 9131
Alignment:
| Q |
445 |
tgagttaagctcacggagacaaggtataatgtttgattcatgatgtcaattttggtgaattagtttaacttcttnnnnnnnnnnnnnnn---caaatatg |
541 |
Q |
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| T |
8899 |
tgagttaagctcacgaagacaatgtatcatgtttgattcatgatgtcaattttgatgaattagtttaacttcttaaaaaaaaaagttaaaaacaaatatg |
8998 |
T |
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| Q |
542 |
atattttatttgaatttactaaaaatagtaaggtctacctttagcccaaatttatattagatgcaaaaataacgtttttaatatttcattctttacatat |
641 |
Q |
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| T |
8999 |
atattttatttgaatttactaaaaatagtaagatctacctttagcccaaatttatattagatgcaaaaataacgtttttaataattcattctttacatat |
9098 |
T |
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| Q |
642 |
gaaatnnnnnnnctcatttttcctggtcttaatt |
675 |
Q |
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| T |
9099 |
gaaat-aaaaaactcatttttcctggtcttaatt |
9131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0533; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 378 - 443
Target Start/End: Original strand, 8756 - 8821
Alignment:
| Q |
378 |
aaaattaacccacctgagttggtctggtcatgttggcttgaatctttgaagtgcggttattctcaa |
443 |
Q |
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| T |
8756 |
aaaattaacccacttgaattggtctggtcatgttggcttgagtctttgaagtgcggttattctcaa |
8821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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