View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9000_low_13 (Length: 663)
Name: NF9000_low_13
Description: NF9000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9000_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 603; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 603; E-Value: 0
Query Start/End: Original strand, 17 - 646
Target Start/End: Original strand, 4132855 - 4133485
Alignment:
| Q |
17 |
gacatcaacgtgctgcgccagaatacaagaccgcaaaatagcatagttatacacaccaaaactttatagcgacctttgaattacactccacacagataac |
116 |
Q |
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||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4132855 |
gacatcaacatgctgcgccaaaatacaagaccgcaaaatagcatagttatacacaccaaaactttatagcgacctttgaattacactccacacagataac |
4132954 |
T |
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| Q |
117 |
accaagatgcatttccaatttcttgtatatcccttgttgctaattccacaaatctggaagcaacatatgttgcaacggtttagatagccacaccatcaga |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
4132955 |
accaagatgcatttccaatttcttgtatatcccttgttgctaattccacaaatctggaagcaacatatgttgcaatggtttagatagccacaccatcaga |
4133054 |
T |
|
| Q |
217 |
cccttccgattcaaattttactgctactaaccaattagttcctcacatcagtccacttccacaacaccttctagctaataacaacttgacactttgataa |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4133055 |
cccttccgattcaaattttactgctactaaccaattagttcctcacatcagtccacttccacaacaccttctagctaataacaacttgacactttgataa |
4133154 |
T |
|
| Q |
317 |
tattaccacacgcctttcgatagttcataaaccaatac-aattcatggcttatccacagaccgctcatttacaagctttctaccatttgttacaatacct |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4133155 |
tattaccacacgcctttcgatagttcataaaccaatacaaattcatggcttatccacagaccgctcatttacaagctttctaccatttgttacaatacct |
4133254 |
T |
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| Q |
416 |
gaaaggtcccggtcaaggcattccttttccatctttctaatctctcaaagttaccgcctatatagatgtggattggggcagctgccaagtttctaaaaaa |
515 |
Q |
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| T |
4133255 |
gaaaggtcccggtcaaggcattccttttccatctttctaatctctcaaagttaccgcctatgtagacgtggattggggcagctgccaagtttctaaaaaa |
4133354 |
T |
|
| Q |
516 |
tacacaaccgattatggcatatttcttggtgactccttgatagattggaaattgaagaagcaagctattgttgctcgctctttagcagaggctgaataca |
615 |
Q |
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| T |
4133355 |
tacacaaccgattatggcatatttcttggtgactccttgatagattggaaattgaagaagcaagctattgttgctcgctctttagcagaggctgaataca |
4133454 |
T |
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| Q |
616 |
ttgccatttctgccttcacatctgagttatt |
646 |
Q |
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| T |
4133455 |
ttgccatttctgccttcacatctgagttatt |
4133485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 7e-17; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 551 - 644
Target Start/End: Complemental strand, 41091908 - 41091815
Alignment:
| Q |
551 |
cttgatagattggaaattgaagaagcaagctattgttgctcgctctttagcagaggctgaatacattgccatttctgccttcacatctgagtta |
644 |
Q |
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| T |
41091908 |
cttgatagcttggaaaccgaagaagtaaactattgttgctcgctcttctgcagaggctgaatagagggccattgctgccctcacatctgagtta |
41091815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 354 - 509
Target Start/End: Complemental strand, 41102145 - 41101987
Alignment:
| Q |
354 |
caattcatggcttatccacagaccgctcatttacaagctttctaccatttgttacaatacctgaaaggt---cccggtcaaggcattccttttccatctt |
450 |
Q |
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|||||||||||| |||| |||| |||||||||||| | || ||||| |||| |||||||||||| || || ||||||||||||| ||||||| || |
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| T |
41102145 |
caattcatggctcatcctaggacctctcatttacaagatgtccaccatctgttgcaatacctgaaaagtactccaggtcaaggcattctttttccagcta |
41102046 |
T |
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| Q |
451 |
tctaatctctcaaagttaccgcctatatagatgtggattggggcagctgccaagtttct |
509 |
Q |
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| T |
41102045 |
cccaatctctcaaagttactgtctatgtggacgcggattggcacagttgccaagtttct |
41101987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 553 - 646
Target Start/End: Complemental strand, 41080556 - 41080463
Alignment:
| Q |
553 |
tgatagattggaaattgaagaagcaagctattgttgctcgctctttagcagaggctgaatacattgccatttctgccttcacatctgagttatt |
646 |
Q |
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|||||| |||||||| |||||||||||| || ||||| ||| | |||||||||||||||| |||||| ||||| |||||||||||||||| |
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| T |
41080556 |
tgatagcttggaaatccaagaagcaagctcctgatgctctctcctccgcagaggctgaatacagggccattgctgccctcacatctgagttatt |
41080463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 490 - 543
Target Start/End: Complemental strand, 41091958 - 41091905
Alignment:
| Q |
490 |
ggggcagctgccaagtttctaaaaaatacacaaccgattatggcatatttcttg |
543 |
Q |
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| T |
41091958 |
ggggaagctgccaagtttcttaaaaattcacaaccacttattgcatatttcttg |
41091905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 72 - 148
Target Start/End: Complemental strand, 43142220 - 43142144
Alignment:
| Q |
72 |
ccaaaactttatagcgacctttgaattacactccacacagataacaccaagatgcatttccaatttcttgtatatcc |
148 |
Q |
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||||||||||| | ||| |||| | | |||| |||||||||| ||||||||| | |||||||||||||||||||| |
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| T |
43142220 |
ccaaaactttacaccgagctttctaattcactacacacagatagtaccaagatgtaattccaatttcttgtatatcc |
43142144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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