View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9000_low_15 (Length: 646)
Name: NF9000_low_15
Description: NF9000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9000_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 568; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 568; E-Value: 0
Query Start/End: Original strand, 13 - 628
Target Start/End: Complemental strand, 50658752 - 50658138
Alignment:
| Q |
13 |
tttggtgtttgaagagatggtggaggttgcttgggttactcatccagcaaataacttctataggccacaaagtgtgtccagactggatgtgtttggtgga |
112 |
Q |
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| T |
50658752 |
tttggtgtttgaagagatggtggaggttgcttgggttactcatccagcaaataacttctataggccacaaagtgtgtccagactggatgtgtttggtgga |
50658653 |
T |
|
| Q |
113 |
ggttgagcaaaatgtcgagggactggtggtgtggtgtgactgactggaacacataaaggtacaacagggggtatagattctgggcatagttatatcataa |
212 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
50658652 |
ggttgagcaaaatgtctagggactggtggtgtggtgtgactgactggaacacataaaggtacagcagggggtatagattctgggcatagttatatcataa |
50658553 |
T |
|
| Q |
213 |
taggagttctgtcactggtatttatattgaaggctgtggatgcacatataatggacatgatttatctgctctaacccgaaagttgctgatgtgaaagcat |
312 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50658552 |
taggagttctgtcactggtatttatattgaaggctgcggatgcacatataatg-acatgatttatctgctctaacccgaaagttgctgatgtgaaagcat |
50658454 |
T |
|
| Q |
313 |
taggactgtaaaagtggcttggtggttcatgaagcaaagcaaggatacttggtttaataaatgactggatcaataaatggagctactagttagtattgat |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
50658453 |
taggactgtaaaagtggcttggtggttcatgaagcaaagcaaggatacttggtttaataaatgactggatcaataaatggagctactaattagtattgat |
50658354 |
T |
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| Q |
413 |
tacaaataatagtctcatttgacacaagttgggcacaagttggcatcaagtcaaaagatgctgcgagcttttaggctatcatgacagtaaatggcttaaa |
512 |
Q |
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| T |
50658353 |
tacaaataatagtctcatttgacacaagttgagcacaagttggcatcaaggcaaaagatgctgcgagcttttaggctatcatgacagtaaatggcttaaa |
50658254 |
T |
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| Q |
513 |
aatcggtgttaatggtagtgttagtgtaatatgttatgttcgaatgcatattgttattgggaaaatatttgttagacaccccaaagatgtatacaccatg |
612 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
50658253 |
aatcggtgttgatggtagtgttagtgtaatatgttatgttcgaatgcatattgttattgggaaaatatttgttagacacctcaaagatgtatacaccatc |
50658154 |
T |
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| Q |
613 |
agcgagatagagataa |
628 |
Q |
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| T |
50658153 |
agggagatagagataa |
50658138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 570 - 627
Target Start/End: Original strand, 34425218 - 34425275
Alignment:
| Q |
570 |
tgggaaaatatttgttagacaccccaaagatgtatacaccatgagcgagatagagata |
627 |
Q |
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|||||||||||||||||||||| || || |||||||||||| || |||||| ||||| |
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| T |
34425218 |
tgggaaaatatttgttagacactcctgaggtgtatacaccataagagagataaagata |
34425275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 572 - 614
Target Start/End: Original strand, 45608613 - 45608655
Alignment:
| Q |
572 |
ggaaaatatttgttagacaccccaaagatgtatacaccatgag |
614 |
Q |
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| T |
45608613 |
ggaaaatatttgttaaacaccccaaatatgtatacaccatgag |
45608655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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