View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9000_low_16 (Length: 643)
Name: NF9000_low_16
Description: NF9000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9000_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 626; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 626; E-Value: 0
Query Start/End: Original strand, 1 - 626
Target Start/End: Original strand, 38922631 - 38923256
Alignment:
| Q |
1 |
tccatctggatcaccaaaaggctttatgttacagctttctgcagcatcatcttcagttttaagtctcttacacatctccctcccatgtcttttcttctcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38922631 |
tccatctggatcaccaaaaggctttatgttacagctttctgcagcatcatcttcagttttaagtctcttacacatctccctcccatgtcttttcttctcc |
38922730 |
T |
|
| Q |
101 |
accaataatttcagttcattcactgttctaatcagctctcttatatactcaatagcatctccaaccactgatgctctatcagtctgcatttgaccaaaac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38922731 |
accaataatttcagttcattcactgttctaatcagctctcttatatactcaatagcatctccaaccactgatgctctatcagtctgcatttgaccaaaac |
38922830 |
T |
|
| Q |
201 |
tgcccgttaatcatggtatcatcaaatagagattcaaatcgtgaaacggaaaatacattgccaataaaaatgtaatttttattaataaataagtgacata |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38922831 |
tgcccgttaatcatggtatcatcaaatagagattcaaatcgtgaaacggaaaatacattgccaataaaaatgtaatttttattaataaataagtgacata |
38922930 |
T |
|
| Q |
301 |
acaatattataaactgatatatcacatatgaaacctcaaaataattcaaaattcaaaacatataacaattgacaacagaaaagtggctggttactcgatt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38922931 |
acaatattataaactgatatatcacatatgaaacctcaaaataattcaaaattcaaaacatataacaattgacaacagaaaagtggctggttactcgatt |
38923030 |
T |
|
| Q |
401 |
cacagataaaattatacattggttaaaaataaatcatagatgtttattgctgtttaccttggtgggacttggaatgagatccctcaagattttgtacttt |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38923031 |
cacagataaaattatacattggttaaaaataaatcatagatgtttattgctgtttaccttggtgggacttggaatgagatccctcaagattttgtacttt |
38923130 |
T |
|
| Q |
501 |
ccattcaattgctcccttctttgtttctcagtcgcaaaatgtttggtagcttttcctcctcttcctttgccaacagaagcagtgaccctattgaattcca |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38923131 |
ccattcaattgctcccttctttgtttctcagtcgcaaaatgtttggtagcttttcctcctcttcctttgccaacagaagcagtgaccctattgaattcca |
38923230 |
T |
|
| Q |
601 |
gcactcccatatccccatctccctcc |
626 |
Q |
| |
|
|||||||||||||||||||||||||| |
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|
| T |
38923231 |
gcactcccatatccccatctccctcc |
38923256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 38909008 - 38909221
Alignment:
| Q |
1 |
tccatctggatcaccaaaaggctttatgttacagctttctgcagcatcatcttcagttttaagtctcttacacatctccctcccatgtcttttcttctcc |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||| ||||||| || ||||| || | ||||||||||||||| |
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|
| T |
38909008 |
tccatctggatcaccaaaaggcttcatgtgacagctttctgcagcatagtcttcagttttatgtctcttgcagatctctatctcgtgtcttttcttctcc |
38909107 |
T |
|
| Q |
101 |
accaataatttcagttcattcactgttctaatcagctctcttatatactcaatagcatctccaaccactgatgctctatcagtctgcatttgaccaaaac |
200 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||| || |||||| |
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|
| T |
38909108 |
accaatagtttcagctcattcactgttctaatcagctctcttaaatactcaatagcatctccaaccactgatgctctgtcatcctgcattagatcaaaac |
38909207 |
T |
|
| Q |
201 |
tgcccgttaatcat |
214 |
Q |
| |
|
|||||||||||||| |
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|
| T |
38909208 |
tgcccgttaatcat |
38909221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 253 - 626
Target Start/End: Original strand, 38909302 - 38909672
Alignment:
| Q |
253 |
atacattgccaataaaaatgtaatttttattaataa-ataagtgacataacaatattataaactgatatatcacatatgaaacctcaaaataattcaaaa |
351 |
Q |
| |
|
||||||||||||||| ||||| ||||||| | | |||||||||||||| | |||| || | |||||| | ||||||| |||||||||||||||| | |
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|
| T |
38909302 |
atacattgccaataataatgtcatttttaaccaaactataagtgacataactaaattacaatttcatatatgatatatgaa-cctcaaaataattcaaga |
38909400 |
T |
|
| Q |
352 |
ttcaaaacatataacaattgacaacagaaaagtggctggttactcgattcacagataaaattatacattggttaaaaataaatcatagatgttta-ttgc |
450 |
Q |
| |
|
|| || ||||| | | |||||| || ||||||| || | |||| ||||| | ||| ||||| | || | | ||||| || |||||||| ||| ||| |
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|
| T |
38909401 |
tttaagttatatatctaatgacaaaagcaaagtggttgat-actcaattcatatatataattagatatggataaaaaaaaagccatagatggttaattgt |
38909499 |
T |
|
| Q |
451 |
tgtttaccttggtgggacttggaatgagatccctcaagattttgtactttccattcaattgctcccttctttgtttctcagtcgcaaaatgtttggtagc |
550 |
Q |
| |
|
| ||||| ||||||| | |||| |||||| ||||||||||||||| |||| ||||||||||| |||||||||||||| || | ||||||| ||||| |
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|
| T |
38909500 |
tatttactttggtggaatttgggatgagactcctcaagattttgtatcttcccttcaattgctctcttctttgtttctccgttgtcaaatgttctgtagc |
38909599 |
T |
|
| Q |
551 |
ttttcctcctcttcctttgccaacagaagcagtgaccctattgaattccagcactcccatatccccatctccctcc |
626 |
Q |
| |
|
||| |||| |||||||||||||| ||||||||||| | ||||||| | |||||||||| | |||||||||||| |
|
|
| T |
38909600 |
ttt---tccttttcctttgccaacaaaagcagtgaccttgttgaattgcgacactcccatacctccatctccctcc |
38909672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 299 - 393
Target Start/End: Complemental strand, 5912743 - 5912650
Alignment:
| Q |
299 |
taacaatattataaactgatatatcacatatgaaacctcaaaataattcaaaattcaaaacatataacaattgacaacagaaaagtggctggtta |
393 |
Q |
| |
|
|||||| ||||||| |||||||| | ||||||| |||||||||||||||| ||||||| ||||| ||| |||||| ||||||| || |||||| |
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|
| T |
5912743 |
taacaaaattataagatgatatattatatatgaa-cctcaaaataattcaagattcaaattatatatcaaatgacaaaagaaaaggggttggtta |
5912650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 106; Significance: 1e-52; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 453 - 606
Target Start/End: Complemental strand, 24802644 - 24802492
Alignment:
| Q |
453 |
tttaccttggtgggacttggaatgagatccctcaagattttgtactttccattcaattgctcccttctttgtttctcagtcgcaaaatgtttggtagctt |
552 |
Q |
| |
|
|||||||| |||||| | ||| |||||||||||||||||||| |||||||||||||||||| | ||||||||||||||| |||||||||| |||||||| |
|
|
| T |
24802644 |
tttaccttagtgggattagga-tgagatccctcaagattttgcactttccattcaattgctttcgtctttgtttctcagttgcaaaatgttcggtagctt |
24802546 |
T |
|
| Q |
553 |
ttcctcctcttcctttgccaacagaagcagtgaccctattgaattccagcactc |
606 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
24802545 |
ttcctcctcttcctttgccaacagaagcagtgaccctgttgaattccagcactc |
24802492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 250 - 349
Target Start/End: Complemental strand, 33895568 - 33895470
Alignment:
| Q |
250 |
aaaatacattgccaataaaaatgtaatttttattaataaataagtgacataacaatattataaactgatatatcacatatgaaacctcaaaataattcaa |
349 |
Q |
| |
|
|||||||| | |||||||||||||||||| | || ||| |||| ||||||||||||||||| ||||||||| | ||||| ||||| |||||||||||| |
|
|
| T |
33895568 |
aaaatacactaccaataaaaatgtaatttgagtgaaaaaacaagtaacataacaatattataagctgatatattatatatg-aaccttaaaataattcaa |
33895470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 266 - 350
Target Start/End: Original strand, 38905210 - 38905293
Alignment:
| Q |
266 |
aaaaatgtaatttttattaataaataagtgacataacaatattataaactgatatatcacatatgaaacctcaaaataattcaaa |
350 |
Q |
| |
|
|||||| |||||||||| | ||| |||||| | ||||| ||||||| ||||||| | | |||| |||||||||||||||||||| |
|
|
| T |
38905210 |
aaaaatttaatttttatataaaaacaagtgagagaacaaaattataagctgatatttgatatat-aaacctcaaaataattcaaa |
38905293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 300 - 368
Target Start/End: Original strand, 32847507 - 32847574
Alignment:
| Q |
300 |
aacaatattataaactgatatatcacatatgaaacctcaaaataattcaaaattcaaaacatataacaa |
368 |
Q |
| |
|
||||| ||||||| ||||||||||| |||||| |||||||||||||||| |||||| |||||||||| |
|
|
| T |
32847507 |
aacaaaattataagctgatatatcatatatgag-cctcaaaataattcaagattcaagtcatataacaa |
32847574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 294 - 386
Target Start/End: Complemental strand, 29161222 - 29161131
Alignment:
| Q |
294 |
tgacataacaatattataaactgatatatcacatatgaaacctcaaaataattcaaaattcaaaacatataacaattgacaacagaaaagtgg |
386 |
Q |
| |
|
||||||||||| |||| || ||||||||||| ||||| |||||||||||||||||| |||| ||||| ||| |||||| |||||||||| |
|
|
| T |
29161222 |
tgacataacaaaattaaaagctgatatatcatatatg-aacctcaaaataattcaaggttcatgtcatatgtcaaatgacaaaagaaaagtgg |
29161131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 255 - 324
Target Start/End: Original strand, 8081818 - 8081888
Alignment:
| Q |
255 |
acattgccaataaaaatgtaatttttat-taataaataagtgacataacaatattataaactgatatatca |
324 |
Q |
| |
|
||||||| ||||||||||| ||||||| ||| |||||| ||||||||| | ||||||| ||||||||||| |
|
|
| T |
8081818 |
acattgctaataaaaatgtcatttttaagtaaaaaataattgacataacgaaattataagctgatatatca |
8081888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 356
Target Start/End: Complemental strand, 32471706 - 32471640
Alignment:
| Q |
289 |
ataagtgacataacaatattataaactgatatatcacatatgaaacctcaaaataattcaaaattcaa |
356 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||| || ||||| || ||||||||||||||| |||||| |
|
|
| T |
32471706 |
ataagtgacataacaaaattataagttgatatagcatatatg-aatctcaaaataattcaagattcaa |
32471640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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