View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9000_low_19 (Length: 498)
Name: NF9000_low_19
Description: NF9000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9000_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 8 - 492
Target Start/End: Complemental strand, 32531899 - 32531416
Alignment:
| Q |
8 |
cacagattgcaaaatccagcaaaagaatgaggaaaattcacggatccagattttattttgtaacagaatcacacatttatgcgcgatatcgttaatttaa |
107 |
Q |
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| T |
32531899 |
cacagattgcaaaatccagcaaaagaatgaggaaaattcacggatccagattttattttgaaagagaatcacacatttacgcacgatatcgttaatttaa |
32531800 |
T |
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| Q |
108 |
gattgaacggctcaaattatacaataataaaatcgattttaaactattacggacagtagagaatttaaactgcgcgacgcgatatatgccccaatggcac |
207 |
Q |
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| T |
32531799 |
gattgaacggctcaaattatacaataataaaatcgattttaaactattacaaacggtagagaatttaaactgcg-gacgcgatatatgccccaatggcac |
32531701 |
T |
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| Q |
208 |
acaatttagagtttggtcacatcaaagtacatagttattaatatcaagaaaaacactcaaacaaagaaatcaacacatgttctcctatttcacacatgac |
307 |
Q |
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| T |
32531700 |
acaatttagagtttggtcacatcaaagtacatagttattaatataaaaaaaaacactcaaacaaagaaatcaacacatgttctcctatttcacacatgac |
32531601 |
T |
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| Q |
308 |
aaggatttatactccttttcatactaagaactctacatgtgaagatttaggaatatatatcacttataaaataaaaaattaaagatgaatattcaagttt |
407 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32531600 |
aaggatttatagtccttttcatactaagaactctacatgtgaagatttaggaatatatatcacttataaaataaaaaattaaagatgaatattcaagttt |
32531501 |
T |
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| Q |
408 |
catagcttcaaattgagatcaagagtatctcccacttcatgaccattctgatttctggatgtttgtccattttgtgtctctgctg |
492 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
32531500 |
catagcttcaaattgagatcaagagtatctcccatttcatgaccattctgagttctggatgtttgtccattttgtgtctctgctg |
32531416 |
T |
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