View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9000_low_22 (Length: 487)
Name: NF9000_low_22
Description: NF9000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9000_low_22 |
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| [»] scaffold0929 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 229 - 472
Target Start/End: Complemental strand, 6384176 - 6383933
Alignment:
| Q |
229 |
catgcgtgggatgcatggacgagagaatttttctccttgttctcttcatttttcatgtacttttcatcattgatatgaacttgagacaaaatttctccaa |
328 |
Q |
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| T |
6384176 |
catgcgtgggatgcatggacgagagaatttttctccttgttctcttcatttttcatgtatttttcatcattgatatgaacttgggacaaaatttctccaa |
6384077 |
T |
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| Q |
329 |
gttatttggtctttatatgcttcgttgtacttggtcttttaacttccataacttccataagatgacttggttgacttacttcaatcatttatacacccaa |
428 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6384076 |
gttatttggtctttatatgcttcgttgtacttggtcttttaacttccataacttccataagatgacttggttgacttacttcaatcatttatacacccaa |
6383977 |
T |
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| Q |
429 |
aaaggctcaatatgcttctagagtttcctagttagggaagaatg |
472 |
Q |
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| T |
6383976 |
aaaggctcaatatgcttctagagtttcctagttagggaagaatg |
6383933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 273 - 336
Target Start/End: Complemental strand, 23736985 - 23736922
Alignment:
| Q |
273 |
ttcatttttcatgtacttttcatcattgatatgaacttgagacaaaatttctccaagttatttg |
336 |
Q |
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| T |
23736985 |
ttcatttttcatgtgcttttcatctttgatatgaacttgggacatatattctccaagttgtttg |
23736922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 15 - 122
Target Start/End: Complemental strand, 6379239 - 6379130
Alignment:
| Q |
15 |
agagaaataaaa-tgtgcatacacaataacaagcgaaaggggttagaaaaa-acctattttggttgctttggtcacactccttagcctccgagctgtcat |
112 |
Q |
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| T |
6379239 |
agagaaataaaagtgtatatacacaataacaagttaaaggggtttgaaaaacaccccttttggttgctctagtcacacttcttagcctatgagtcgtcat |
6379140 |
T |
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| Q |
113 |
gattttgaat |
122 |
Q |
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| T |
6379139 |
gattctgaat |
6379130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 422
Target Start/End: Complemental strand, 6370374 - 6370266
Alignment:
| Q |
313 |
gacaaaatttctccaagttatttggtctttatatgcttcgttgtacttggtcttttaacttccataacttccataagatgacttggttgacttacttcaa |
412 |
Q |
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| T |
6370374 |
gacaaaattcccccaaattatttagtcttcatatgtttcattgta-ttgatcttctagctcccataactttcaagagatgtcttggttgacttactttca |
6370276 |
T |
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| Q |
413 |
tcatttatac |
422 |
Q |
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| T |
6370275 |
tgatttatac |
6370266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 422
Target Start/End: Complemental strand, 6378839 - 6378731
Alignment:
| Q |
313 |
gacaaaatttctccaagttatttggtctttatatgcttcgttgtacttggtcttttaacttccataacttccataagatgacttggttgacttacttcaa |
412 |
Q |
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||||||||| | |||| |||||| ||||| ||||| ||| ||||| ||| |||| || || ||||||||| || ||||| |||||||||||||||| | |
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| T |
6378839 |
gacaaaattcccccaaattatttagtcttcatatgtttcattgta-ttgatcttctagctcccataactttcaagagatgtcttggttgacttactttca |
6378741 |
T |
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| Q |
413 |
tcatttatac |
422 |
Q |
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| T |
6378740 |
tgatttatac |
6378731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0929 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0929
Description:
Target: scaffold0929; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 422
Target Start/End: Complemental strand, 1324 - 1228
Alignment:
| Q |
325 |
ccaagttatttggtctttatatgcttcgttgtacttggtcttttaacttccataacttccataagatgacttggttgacttacttcaatcatttatac |
422 |
Q |
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| T |
1324 |
ccaagttatttggtcttcatatgtttcattgta-ttgatcttctggcttccataactttcaagagatatcttggttgacttactttcatgatttatac |
1228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 401
Target Start/End: Complemental strand, 33148757 - 33148704
Alignment:
| Q |
348 |
cttcgttgtacttggtcttttaacttccataacttccataagatgacttggttg |
401 |
Q |
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|||| ||||||||| || | ||||||||||||||| ||| |||||||||||||| |
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| T |
33148757 |
cttcattgtacttgatcatctaacttccataacttgcatgagatgacttggttg |
33148704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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