View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9000_low_24 (Length: 435)
Name: NF9000_low_24
Description: NF9000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9000_low_24 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 174; Significance: 2e-93; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 155 - 365
Target Start/End: Complemental strand, 37787863 - 37787653
Alignment:
| Q |
155 |
ttgtcacatgcacatatataagnnnnnnntaaagaacatcaaaactcttgtgacacattaaatgtggtaataaagtaactttatttacatttctaataaa |
254 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
37787863 |
ttgtcacatgcacatatataagaaaaaaataaagaacatcaaaactcatgtgacacattaaatgtggtaataaagtaactttatttacatttctattaaa |
37787764 |
T |
|
| Q |
255 |
taaagggaacttctatggtagtttcttacccctagtatggtggttttgtagttctcatttcccaggattcgaccctcctcgtaatcaaagaaagataaaa |
354 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
37787763 |
taaagggaacttctatggtagtttcttacccctagtatggtggttttgtagttctcatttcccaggattcgaccctcctcgtaatcaaagaaagaaaaaa |
37787664 |
T |
|
| Q |
355 |
caaatcgacta |
365 |
Q |
| |
|
|||||| |||| |
|
|
| T |
37787663 |
caaatctacta |
37787653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 8 - 156
Target Start/End: Complemental strand, 37788309 - 37788159
Alignment:
| Q |
8 |
cattgagatggttaaacatgaaatgccacatgtgc--gtagtattcattttgcaattttagaaaaaacattttccaatttgtagaaatgagagactattt |
105 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37788309 |
cattaagatggttaaacatgaaatgccacatgtgcttgtagtattcattttgcaattttagaaaaaacattttccaatttgtagaaatgagagactattt |
37788210 |
T |
|
| Q |
106 |
tgatggatcctattcaatctacttttgagcctctatcaaatcgagattgtt |
156 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
37788209 |
tgatggatcctattcaatctacttttgagcctctatcaaatctagattgtt |
37788159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University