View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9000_low_26 (Length: 396)
Name: NF9000_low_26
Description: NF9000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9000_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 13 - 358
Target Start/End: Complemental strand, 3228824 - 3228479
Alignment:
| Q |
13 |
cctgtggtgcccctaaacattgagtgcttgatggatgagaaggatgtaaagggtataatgaagcgtgatgagtttgaggaactgagtctcccgcttttgg |
112 |
Q |
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| T |
3228824 |
cctgtggtgcccctaaacatcgagtgcttgatggatgagaaggatgtaaagggtataatgaagcgtgatgagtttgaggaactgagtctcccgattttgg |
3228725 |
T |
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| Q |
113 |
agcgtgttaatggacctttggagagggcacttgctgaagcaggactctcagttgatgatatacatatggtggaggtcgttggttccggctctcgtgtacc |
212 |
Q |
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| T |
3228724 |
agcgtgttaagggacctttggagagggcacttgctgaagcaggactctcagttgatgatatacatatggtggaggtcgttggttccggctctcgtgtacc |
3228625 |
T |
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| Q |
213 |
tgctataaacaagatcttgacgtagttgttcaagaaggagcataggcgaacaatgaacgccagtgaatgtgttgctaaaggtgctgcattgcaatgtgct |
312 |
Q |
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| T |
3228624 |
tgctataaacaagatcttgacggagtttttcaagaaggagcctaggcgaacaatgaacgccagtgaatgtgttgctaaaggtgctgcattgcaatgtgct |
3228525 |
T |
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| Q |
313 |
attcttagcccaacgtttaaagtgcgagagtttcaggtaacatttc |
358 |
Q |
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| T |
3228524 |
attcttagcccaacgtttaaagtgcgagaatttcaggtaacatttc |
3228479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 89; Significance: 9e-43; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 28 - 352
Target Start/End: Original strand, 43971020 - 43971344
Alignment:
| Q |
28 |
aacattgagtgcttgatggatgagaaggatgtaaagggtataatgaagcgtgatgagtttgaggaactgagtctcccgcttttggagcgtgttaatggac |
127 |
Q |
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| T |
43971020 |
aacatcgagtgcttaatggatgagaaggatgtgaggggatttatcaagcgtgatgattttgagcaactatctcttccaatcttggagcgtgtgaagggac |
43971119 |
T |
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| Q |
128 |
ctttggagagggcacttgctgaagcaggactctcagttgatgatatacatatggtggaggtcgttggttccggctctcgtgtacctgctataaacaagat |
227 |
Q |
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| T |
43971120 |
ctttggagaaggcacttgcagaagcaggtcttacggttgagaacatccacatggttgaggtggttggttccggttcccgtgtaccagctatcaacaaaat |
43971219 |
T |
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| Q |
228 |
cttgacgtagttgttcaagaaggagcataggcgaacaatgaacgccagtgaatgtgttgctaaaggtgctgcattgcaatgtgctattcttagcccaacg |
327 |
Q |
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| T |
43971220 |
tttgacagagttcttcaaaaaggaacctaggcggactatgaatgctagcgagtgtgttgccaggggtgctgcattgcagtgtgcaattcttagtccaact |
43971319 |
T |
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| Q |
328 |
tttaaagtgcgagagtttcaggtaa |
352 |
Q |
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| T |
43971320 |
tttaaagtacgagagttccaggtaa |
43971344 |
T |
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