View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9000_low_27 (Length: 391)
Name: NF9000_low_27
Description: NF9000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9000_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 373
Target Start/End: Original strand, 31295117 - 31295492
Alignment:
| Q |
1 |
ttggtcaatgcaattgttggctgttgcttgcttatctttggcagccaaagtagacgaaaccgatgttcctcggattcttgaattgcagattggtgaatcc |
100 |
Q |
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| T |
31295117 |
ttggtcaatgcaattgttggctgttgcttgcttatctttggcagccaaagtagacgaaaccgatgttcctcggattcttgaattgcagattggtgaatcc |
31295216 |
T |
|
| Q |
101 |
aagtttgtgtttgaagtaaaaaccattcagaaaatagagcttctagtactaagcaccttgaagtggagaatgcaggcaattactcctttctccttcattg |
200 |
Q |
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| T |
31295217 |
aagtttgtgtttgaagcaaaaaccattcagaaaatagagcttctggtactaaccacattgaagtggagaatgcaagcaattactcctttctccttcattg |
31295316 |
T |
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| Q |
201 |
aatatttcctttctaagattaatgatgataagagttcattg---aattctataattttgcaatgtactcaacttatatcaagcaccattaaaagtcctga |
297 |
Q |
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| T |
31295317 |
aatatttcctttctaagattaatgatgataagagttcattgaataattctataattttgcaatgtactcaacttatatcaagcaccattaaaagtcctga |
31295416 |
T |
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| Q |
298 |
cttcttggaattcaaaccatcagagattgcagcagcagtggcaacatatgttgttggagaatttcaagcaattgat |
373 |
Q |
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| T |
31295417 |
cttcttggaattcaaaccatcagagattgcagcagcagtggcaacatatgttgtagaagaatttcaagcaattgat |
31295492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 63 - 155
Target Start/End: Original strand, 31301144 - 31301236
Alignment:
| Q |
63 |
atgttcctcggattcttgaattgcagattggtgaatccaagtttgtgtttgaagtaaaaaccattcagaaaatagagcttctagtactaagca |
155 |
Q |
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| T |
31301144 |
atgttcctccgaattttgatttgcagattagtgaatccaagtttgtgtttgaaggtaaaaccattcagaaaatggagcttctagtactgagca |
31301236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 147 - 217
Target Start/End: Original strand, 31301998 - 31302067
Alignment:
| Q |
147 |
tactaagcaccttgaagtggagaatgcaggcaattactcctttctccttcattgaatatttcctttctaag |
217 |
Q |
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| T |
31301998 |
tactgagcacattgaagtggagaatgcaagcaattactcctttctccttcattgaat-tttcctttctaag |
31302067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 115; Significance: 3e-58; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 84 - 285
Target Start/End: Complemental strand, 46341967 - 46341763
Alignment:
| Q |
84 |
tgcagattggtgaatccaagtttgtgtttgaagtaaaaaccattcagaaaatagagcttctagtactaagcaccttgaagtggagaatgcaggcaattac |
183 |
Q |
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| T |
46341967 |
tgcagattggtgaatccaagtttgtatttgaagctaaaaccatacagagaatggagcttctagtactcagcacattgaagtggagaatgcaagcaattac |
46341868 |
T |
|
| Q |
184 |
tcctttctccttcattgaatatttcctttctaagatta---atgatgataagagttcattgaattctataattttgcaatgtactcaacttatatcaagc |
280 |
Q |
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||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||| | |||| ||||| || || |||||||||||||||||| |
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| T |
46341867 |
tccattctccttcattgaatgtttcctttctaagattaaagatgatgataagagttcattaagttcttcaatttcgcgatcaactcaacttatatcaagc |
46341768 |
T |
|
| Q |
281 |
accat |
285 |
Q |
| |
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||||| |
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| T |
46341767 |
accat |
46341763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 295 - 373
Target Start/End: Complemental strand, 46341613 - 46341535
Alignment:
| Q |
295 |
tgacttcttggaattcaaaccatcagagattgcagcagcagtggcaacatatgttgttggagaatttcaagcaattgat |
373 |
Q |
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| T |
46341613 |
tgacttcttggaattcaaaccatcagagattgcagcagctgtggcaacatgtgttgttggggaaacccaagcaattgat |
46341535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 46342158 - 46342071
Alignment:
| Q |
1 |
ttggtcaatgcaattgttggctgttgcttgcttatctttggcagccaaagtagacgaaaccgatgttcctcggattcttgaattgcag |
88 |
Q |
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|||| ||||||||||||||||||| |||||||||||||||||||| |||||||| ||||| | |||||||| | |||||| |||||| |
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| T |
46342158 |
ttggacaatgcaattgttggctgtagcttgcttatctttggcagctaaagtagaggaaactgctgttcctcagcctcttgatttgcag |
46342071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 136 - 211
Target Start/End: Complemental strand, 27699772 - 27699697
Alignment:
| Q |
136 |
agagcttctagtactaagcaccttgaagtggagaatgcaggcaattactcctttctccttcattgaatatttcctt |
211 |
Q |
| |
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||||||||| |||||||||| ||||| ||||||||||| |||||||| |||||||||| |||||| | ||||||| |
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| T |
27699772 |
agagcttctgatactaagcacattgaactggagaatgcaagcaattacacctttctcctacattgactttttcctt |
27699697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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