View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9000_low_30 (Length: 383)
Name: NF9000_low_30
Description: NF9000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9000_low_30 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 118 - 347
Target Start/End: Complemental strand, 28436130 - 28435910
Alignment:
| Q |
118 |
tctaaagatctaatggtgaaattcatgaacacaaaatgttgagaagtagacagttgcgagtttaaatcgatgttctataannnnnnnnnaaaggaaatcg |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||| |||| | |
|
|
| T |
28436130 |
tctaaagatctaatggtgaaattcatgaacacaaaatattaagaagtagacagttgcgagtttaaatcgatgttctatttttttttttaaaagaaaattg |
28436031 |
T |
|
| Q |
218 |
atgtttcaacatatcaaatgtctcataaattataacaagcattatttattttannnnnnnnatataaagaatcaaatacaatcattataagcaaacctac |
317 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28436030 |
atgttccaacatatcaaatgtctcataaattataacaagcattatt--tttta-------tatataaagaatcaaatacaatcattataagcaaacctac |
28435940 |
T |
|
| Q |
318 |
ttattaatgggaatgttcgaatattcttga |
347 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
28435939 |
ttattaatgggaatgttcgaatattcttga |
28435910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 28436234 - 28436194
Alignment:
| Q |
14 |
ttggagttcacacaaaaagtccttgaatgcttgtgcaaaca |
54 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
28436234 |
ttggagttcacacaaaaagaccttgaatgcttgtgcaaaca |
28436194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University