View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9000_low_33 (Length: 367)
Name: NF9000_low_33
Description: NF9000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9000_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 143; Significance: 5e-75; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 14 - 176
Target Start/End: Original strand, 51901702 - 51901859
Alignment:
| Q |
14 |
ttggtgttactgttatctatattcatcctccataatatatgacaagagacatagatgaggactgatcaggagcaagagtatgagagtgatacttcgttga |
113 |
Q |
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| T |
51901702 |
ttggtgttactgttatctatattcatcctccata-----tgacaagagacatagatgaggactgatcaggagcaagagtatgagagtgatacttcgttga |
51901796 |
T |
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| Q |
114 |
ttcccatatattatattatacataatttaaagaccatggtagagagtttgacttccctattta |
176 |
Q |
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| T |
51901797 |
ttcccatatattatattatacataatttaaagaccatggtagagagtttgacttccctattta |
51901859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 173 - 334
Target Start/End: Original strand, 51901885 - 51902045
Alignment:
| Q |
173 |
tttatagtgctattcaaatgtggtacaaacaagtccttgctattaagtattcttgcatgcaatcatctgnnnnnnnnaccaaaataataaaatgagatct |
272 |
Q |
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| T |
51901885 |
tttatagtgctattcaaatgtggtacaaacaagtccttgctattaagtattcttgcatgcaatcatctgttttttt-accaaaataataaaatgagatct |
51901983 |
T |
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| Q |
273 |
tttaaaagccttaaataggtgttcattgatcaattgaacctctatattagtcatattattct |
334 |
Q |
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| T |
51901984 |
tttaaaagccttaaataggtgttcattgatcaattgaacctctatattagtcatattattct |
51902045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 268 - 349
Target Start/End: Original strand, 5926203 - 5926284
Alignment:
| Q |
268 |
gatcttttaaaagccttaaataggtgttcattgatcaattgaacctctatattagtcatattattcttcacagagaaaagtt |
349 |
Q |
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| T |
5926203 |
gatcctttaagagccttatcgaggtgttcattgaccaatcgaacctctacgttggtcccattattcttcacagagaaaagtt |
5926284 |
T |
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