View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9000_low_36 (Length: 350)
Name: NF9000_low_36
Description: NF9000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9000_low_36 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 16 - 350
Target Start/End: Original strand, 31294793 - 31295127
Alignment:
| Q |
16 |
tggtggttcgatggaggtgtacgaagattcgtggcatcctaggaacaaacaacgctctggtggtgttcctaatgagttgcacttgccattgcagagtgaa |
115 |
Q |
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| T |
31294793 |
tggtggttcgatggaggattacgaagatttgtggcatcctaggaacgaacaacgctctggtggtgtccctaatgagttgcacttgccattgcagagtgaa |
31294892 |
T |
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| Q |
116 |
gagtgtttggttctgatgttggaaaaagaatgtcaacaatggcatggtgctgattacttgaataggttaaagtttggagatttggattttggtgcaagaa |
215 |
Q |
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| T |
31294893 |
gagtgtttggttctgatgttggaaaaagaatgtcaacaatggcatggtgctgattacttgaataggttaaagtttggagatttggattttggtgcaagaa |
31294992 |
T |
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| Q |
216 |
atgaagccattgattggattcaaaaggttcaagcacatttcggttttggtcctctttgtgtttatctatccattaattacatggatcgtttcctttcggc |
315 |
Q |
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| T |
31294993 |
atgaagccattgattggattcaaaaggttcaatcacatttcggttttggtccgctttgtgtttatctatccattaattacatggatcgtttcctctctgc |
31295092 |
T |
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| Q |
316 |
atatcagttcccagagagaagagattggtcaatgc |
350 |
Q |
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| T |
31295093 |
atatcaattcccagagagaagagattggtcaatgc |
31295127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 98 - 243
Target Start/End: Complemental strand, 46342888 - 46342743
Alignment:
| Q |
98 |
ttgccattgcagagtgaagagtgtttggttctgatgttggaaaaagaatgtcaacaatggcatggtgctgattacttgaataggttaaagtttggagatt |
197 |
Q |
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| T |
46342888 |
ttgccattgcagagtgaagagtgtttggttctgatgttggaaaaagagtgtcagcaatggcctggtgctgattatctgaataagttgcggtttggagatt |
46342789 |
T |
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| Q |
198 |
tggattttggtgcaagaaatgaagccattgattggattcaaaaggt |
243 |
Q |
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| T |
46342788 |
tggattttgaggctagaaatgaagtcatcgattggattcaaaaggt |
46342743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 240 - 312
Target Start/End: Complemental strand, 46342350 - 46342278
Alignment:
| Q |
240 |
aggttcaagcacatttcggttttggtcctctttgtgtttatctatccattaattacatggatcgtttcctttc |
312 |
Q |
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| T |
46342350 |
aggttcgagcacatttcggttttggtcctctttgtgcttatctatccattaattacatggatcgtttcctttc |
46342278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 46342979 - 46342935
Alignment:
| Q |
16 |
tggtggttcgatggaggtgtacgaagattcgtggcatcctaggaa |
60 |
Q |
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| T |
46342979 |
tggtggttcggtggaggtgtacggggattcgtggcgtcctaggaa |
46342935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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