View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9000_low_38 (Length: 339)
Name: NF9000_low_38
Description: NF9000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9000_low_38 |
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Alignment Details
Target: chr6 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 13 - 321
Target Start/End: Original strand, 31856188 - 31856495
Alignment:
| Q |
13 |
tggacatcaatttgtgtctattctttcttccttttccccttcacaacaaagatttattcaatttgcaacaacatcacaagatgatatgagttgcttggca |
112 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||| ||||||||||||||| |
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| T |
31856188 |
tggagatcaatttgtgtctattctttcttccttttccccttcacagcaaaaatttatttaatttgcaacaacatcacaagatgagatgagttgcttggca |
31856287 |
T |
|
| Q |
113 |
taagccacacttacataggaacaaagaaacagaggcaaggcacaaacaaaacaaacgctaagccccattatcacaaccaccagtacatacaaaactaccc |
212 |
Q |
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|||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31856288 |
taagccacacttgcataggaacaaagaaacagaggcaagacacaaacaaaacaaacgctaagccccattatcacaaccaccagtacatacaaaactaccc |
31856387 |
T |
|
| Q |
213 |
gaagcatcacaataacaggaaacatcacttgcggcatctaccctccaataacataacaacaaaattaaaagctaaaaattttctttcatcaccaaattca |
312 |
Q |
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|||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||| |
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| T |
31856388 |
aaagcatcacagtaacagaaaacatcacttgcggcctctaccctccaataacataacaacaaaattaaaagct-aaaatcttcttttatcaccaaattca |
31856486 |
T |
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| Q |
313 |
tcatagatt |
321 |
Q |
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||||||||| |
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| T |
31856487 |
tcatagatt |
31856495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 88; Significance: 3e-42; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 55 - 321
Target Start/End: Original strand, 37464149 - 37464420
Alignment:
| Q |
55 |
acaacaaagatttattcaatttgcaacaacatcacaagatgatatgagttgcttggcataagccacacttacataggaacaaa------gaaacagaggc |
148 |
Q |
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|||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||| || | | | ||| ||||||||| |||| |||||| |
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| T |
37464149 |
acaacaaatatttagtcaatttgcaacaacatcacaagatgagatgagttgcttggcacaaacaa-agaaacagaggaacaaaaacaaagaaatagaggc |
37464247 |
T |
|
| Q |
149 |
aaggcacaaacaaaacaaacg-ctaagcccc-attatcacaaccaccagtacatacaaaactacccgaagcatcacaataacaggaaacatcacttgcgg |
246 |
Q |
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||| ||||||||||||||||| ||||||||| ||||||||| ||||||||||||| |||| || || |||||||||| ||||| |||| ||||| | || |
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| T |
37464248 |
aagacacaaacaaaacaaacgtctaagcccccattatcacagccaccagtacatagaaaattatccaaagcatcacagtaacataaaacttcactcgtgg |
37464347 |
T |
|
| Q |
247 |
catctaccctccaataacataacaacaaaattaaaagctaaaaattttctttcatcaccaaattcatcatagatt |
321 |
Q |
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| T |
37464348 |
cctctaccct-caacaacagaacaacaaaattaaaagct-aaaatcttccttcatcatcaaattcgtcgtagatt |
37464420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 59 - 178
Target Start/End: Complemental strand, 19810457 - 19810337
Alignment:
| Q |
59 |
caaagatttattcaatttgcaacaacatcacaagatgatatgagttgcttggcataagccacacttacataggaacaaagaaacagaggcaaggcacaaa |
158 |
Q |
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|||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||| |||| | |||||||||| |||| ||||| |||||| |
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| T |
19810457 |
caaagaattattcaattttcaacaacatcacaagatgagatgagttgcttggcataagtcacacgtacacatgaacaaagaatcagatgcaagacacaaa |
19810358 |
T |
|
| Q |
159 |
caaaacaaacg-ctaagcccc |
178 |
Q |
| |
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||||||||||| ||||||||| |
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| T |
19810357 |
caaaacaaacgcctaagcccc |
19810337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 182 - 310
Target Start/End: Complemental strand, 19802619 - 19802494
Alignment:
| Q |
182 |
atcacaaccaccagtacatacaaaactacccgaagcatcacaataacaggaaacatcacttgcggcatctaccctccaataacataacaacaaaattaaa |
281 |
Q |
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|||||||||||||||||||| ||||||||| ||||||||||||||||| ||| ||| |||| ||| |||| ||||||||||||||||||| ||||||| |
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| T |
19802619 |
atcacaaccaccagtacataaaaaactacctgaagcatcacaataacataaaagatctcttgtggcctcta--ctccaataacataacaacataattaaa |
19802522 |
T |
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| Q |
282 |
agctaaaaattttctttcatcaccaaatt |
310 |
Q |
| |
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|||| ||||||||| ||||| |||||||| |
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| T |
19802521 |
agct-aaaattttccttcattaccaaatt |
19802494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 37464089 - 37464130
Alignment:
| Q |
13 |
tggacatcaatttgtgtctattctttcttccttttccccttc |
54 |
Q |
| |
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|||| |||||||||||||||||||||||||||||| |||||| |
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| T |
37464089 |
tggagatcaatttgtgtctattctttcttcctttttcccttc |
37464130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 5224806 - 5224838
Alignment:
| Q |
22 |
atttgtgtctattctttcttccttttccccttc |
54 |
Q |
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||||||||||||||||||||| ||||||||||| |
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| T |
5224806 |
atttgtgtctattctttcttcattttccccttc |
5224838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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