View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9000_low_4 (Length: 1109)
Name: NF9000_low_4
Description: NF9000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9000_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 885; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 885; E-Value: 0
Query Start/End: Original strand, 148 - 1091
Target Start/End: Complemental strand, 29461791 - 29460845
Alignment:
| Q |
148 |
cagtctcagaaagaaagctcaaaagggaaatatccaattttggtacatttaattatacataatcctaattgaataaaagaatttgtgtaccaccatagtg |
247 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29461791 |
cagtctcagaaagaaagctcaaaagggaaatatccaattttggtacatttaattatacataatcctaattgaataaaagaatttgtgtaccaccatagtg |
29461692 |
T |
|
| Q |
248 |
agaaaccatcaaaccaataaaaggttgaacattttttcttcttccaaataacgtgatattgtggtttttgaaaaaccttgaatttactcatgtttgggca |
347 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
29461691 |
agaaaccatcaaaccaataaaaggttgaacattttttcttcttccaaataacatgatattgtggtttttaaaaaaccttgaatttactcatgtttgggca |
29461592 |
T |
|
| Q |
348 |
attcaagtcatagcataagnnnnnnnn---gtactgtcacaaacaaagaaacatatatagcagcataataagaatgaagtaactagttatgaacctgcaa |
444 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29461591 |
attcaagtcatagcataaaaaaaaaaaaaagtactgtcacaaacaaagaaacatatatagcagcataataagaatgaagtaactagttatgaacctgcaa |
29461492 |
T |
|
| Q |
445 |
gtgtatcaagcaaagtggattttccagagccagaaggacccataatagccatgattctaccaggctcagcaaaaccatttaacccattaagtaacctctt |
544 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29461491 |
gtgtatcaagcaaagtggattttccagagccagaaggacccataatagccatgattctaccaggctcagcaaaaccatttaacccattaagtaacctctt |
29461392 |
T |
|
| Q |
545 |
ggttggtcctttcccaaaatttggcaacataactcttagatcttcccatgctaagaaacttcctctattaaggccacaatatgcttcctcatcactctca |
644 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29461391 |
ggttggtcctttcccaaaatttggcaacataactcttagatcttcccatgctaagaaacttcctctattaaggccacaatatgcttcctcatcactctca |
29461292 |
T |
|
| Q |
645 |
tccatgttgtatcctttgttgttgctaccacttgctgcttcaatctccatgttgttatgttgatttgaagctaaagatagtttgaacaagatattattat |
744 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
29461291 |
tccatgttgtatcctttgttgttgctaccacttgctgcttcaatctccatgttgttatgtagatttgaagctaaagatagtttgaacaagatattattat |
29461192 |
T |
|
| Q |
745 |
gaagggtaacataaaataagcttaaaagagataagaaaagaaatctagaatggatgtacaacaaatgcaaaacaactaaccattaatgctgtacctaatc |
844 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29461191 |
gaatggtaacataaaataagcttaaaagagataagaaaagaaatctagaatggatgtacaacaaatgcaaaacaactaaccattaatgctgtacctaatc |
29461092 |
T |
|
| Q |
845 |
aaacagttacatggaaaaattatgaagagagagaaaagatgggagagtttaatgtcttgggtatgaacggatagaagcatataggtggcaagtaaaggaa |
944 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29461091 |
aaacagttacatggaaaaattatgaagagagagaaaagatgggagagtttaatgtcttgggtatgaacggatagaagcatataggtggcaagtaaaggaa |
29460992 |
T |
|
| Q |
945 |
attaatgtgaaggttacatgtgcttacatatacaccatgcttttgatcagtcacacaaatttgatatcaatgaatgttgttgcattctcaaaccgtcgtt |
1044 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29460991 |
attaatgtgaaggttacatgtgcttacatatacaccatacttttgatcagtcacacaaatttgatatcaatgaatgttgttgcattctcaaaccgtcgtt |
29460892 |
T |
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| Q |
1045 |
tttattagtactagtaaacttcttttagtgggaaatttagttttctt |
1091 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29460891 |
tttattagtactagtaaacttcttttagtgggaaatttagttttctt |
29460845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 140; E-Value: 9e-73
Query Start/End: Original strand, 413 - 600
Target Start/End: Complemental strand, 29426256 - 29426069
Alignment:
| Q |
413 |
taagaatgaagtaactagttatgaacctgcaagtgtatcaagcaaagtggattttccagagccagaaggacccataatagccatgattctaccaggctca |
512 |
Q |
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||||||||| |||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29426256 |
taagaatgaggtaacttttaacgaacctgcaagtgtatcaagcaaagtggattttccagagccagaaggacccataatagccatgattctaccaggctca |
29426157 |
T |
|
| Q |
513 |
gcaaaaccatttaacccattaagtaacctcttggttggtcctttcccaaaatttggcaacataactcttagatcttcccatgctaaga |
600 |
Q |
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| T |
29426156 |
gcaaaaccattaagaccattaagtaaccttttagttggtcctttcccaaaatttggcaacataactcttacatcctcccatgctaaga |
29426069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 15 - 73
Target Start/End: Complemental strand, 29461924 - 29461866
Alignment:
| Q |
15 |
cacagaccaagccattaaaacaagggcccttaggttagtgtcaccagaattgagttgaa |
73 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29461924 |
cacagaccaaaccattaaaacaagggcccttaggttagtgtcaccagaattgagttgaa |
29461866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 699 - 839
Target Start/End: Complemental strand, 29426036 - 29425893
Alignment:
| Q |
699 |
ttatgttgatttgaagctaaagatagtttgaacaagatattattatgaagggta------acataaaataagcttaaaagagataagaaaagaaatctag |
792 |
Q |
| |
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|||||||||||||||||||||| ||||||| | ||||||||||||||||| ||||||||||||||||||||| ||||| || ||||||||| |
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| T |
29426036 |
ttatgttgatttgaagctaaagg-agtttgatttatttattattatgaagggtacgtataacataaaataagcttaaaagatataag-aatgaaatctag |
29425939 |
T |
|
| Q |
793 |
aatggatgtacaacaaatgcaaaacaactaaccattaatgctgtacc |
839 |
Q |
| |
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||| |||||| | ||||| |||||||||||| ||||||| |||||| |
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| T |
29425938 |
aat-gatgtatatcaaataaaaaacaactaacaattaatgttgtacc |
29425893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 449 - 502
Target Start/End: Complemental strand, 29476656 - 29476603
Alignment:
| Q |
449 |
atcaagcaaagtggattttccagagccagaaggacccataatagccatgattct |
502 |
Q |
| |
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|||||| | ||| ||||||||||| ||||| ||||||||||||||||||||||| |
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| T |
29476656 |
atcaagaagagtagattttccagaaccagatggacccataatagccatgattct |
29476603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 459 - 495
Target Start/End: Complemental strand, 37290273 - 37290237
Alignment:
| Q |
459 |
gtggattttccagagccagaaggacccataatagcca |
495 |
Q |
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|||||||||||||||||||| |||||||||||||||| |
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| T |
37290273 |
gtggattttccagagccagatggacccataatagcca |
37290237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 459 - 544
Target Start/End: Complemental strand, 36068412 - 36068327
Alignment:
| Q |
459 |
gtggattttccagagccagaaggacccataatagccatgattctaccaggctcagcaaaaccatttaacccattaagtaacctctt |
544 |
Q |
| |
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|||| ||| ||| |||||||||||||||||| ||||||||| |||||||| |||||||||||| ||| |||| ||||||| |||| |
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| T |
36068412 |
gtggttttgccacagccagaaggacccataacagccatgatcctaccaggttcagcaaaaccagttacaccatcaagtaacttctt |
36068327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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