View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9000_low_47 (Length: 260)
Name: NF9000_low_47
Description: NF9000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9000_low_47 |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 17 - 245
Target Start/End: Complemental strand, 25701316 - 25701085
Alignment:
| Q |
17 |
acaaatgtattgcggttcgagatccatagattcttaaggttgattctgacgtacgctccatgttttcctgaatgatgtttgaagatggagccttatatcg |
116 |
Q |
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| T |
25701316 |
acaaatgtattgcggttcaagatccatagattcttaaggttgattctgacgtacgctccatgttttcctgaatgatgtttgaagatggagccttatatcg |
25701217 |
T |
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| Q |
117 |
atgggatcgttcaaactccaagtgtcaaaagtgttagtagagttttatttgggctggtcaaattatgtcgaact---agaaaaatccttgctgtgtttat |
213 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |
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| T |
25701216 |
atgggatcgttcaaactccaagtgtcaaaagtgttactagagttttatttgggctggtcaaattatgccgaactggatgaaaaatccttgctgtgtttat |
25701117 |
T |
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| Q |
214 |
tttatatactctactctctttatcttgttatt |
245 |
Q |
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||| |||||||||||||||||||||||||||| |
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| T |
25701116 |
tttctatactctactctctttatcttgttatt |
25701085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 213 - 247
Target Start/End: Complemental strand, 14301446 - 14301412
Alignment:
| Q |
213 |
ttttatatactctactctctttatcttgttattct |
247 |
Q |
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|||| |||||||||||||||||||||||||||||| |
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| T |
14301446 |
ttttctatactctactctctttatcttgttattct |
14301412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 150
Target Start/End: Original strand, 7674200 - 7674313
Alignment:
| Q |
38 |
atccatagattcttaaggttgattctgacgtacgctccatgttttcct-gaatgatgtttgaagatggagccttatatcgatgggatcgttcaaactcca |
136 |
Q |
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|||||||||||||||||| ||||| |||| || || |||||||| || | ||| | | ||||||||||| |||||| |||| ||| ||||||| || |
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| T |
7674200 |
atccatagattcttaaggatgattttgacacacacttcatgtttttcttggatggtttctgaagatggagtgttatatttatggattcgatcaaactgca |
7674299 |
T |
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| Q |
137 |
agtgtcaaaagtgt |
150 |
Q |
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|||||||||||||| |
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| T |
7674300 |
agtgtcaaaagtgt |
7674313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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