View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9000_low_5 (Length: 961)
Name: NF9000_low_5
Description: NF9000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9000_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 816; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 816; E-Value: 0
Query Start/End: Original strand, 17 - 943
Target Start/End: Complemental strand, 43437332 - 43436407
Alignment:
| Q |
17 |
ttctgcagcaaataccagggttgcggatgcaggactgggaaatatagcgtggaaagaaagagttgacgcgtggaagatgaagaaggaaaagaatgctgtt |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43437332 |
ttctgcagcaaataccagggttgcggatgcaggactgggaaatatagcgtggaaagaaagagttgacgcgtggaagatgaagaaggaaaagaatgctgtt |
43437233 |
T |
|
| Q |
117 |
ccaatgagctcaagccaagcttcttctgaaagaggcgatggagatgttgattccagatctgatgtaccagttgatgattcgttgttgttagtatttcctt |
216 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
43437232 |
ccaatgagctcaagccaagcttcttctgaaagaggcgatggagatgttgattccagatctgatgtacctgttgatgattcgttgttgttagtatttcctt |
43437133 |
T |
|
| Q |
217 |
tattacctctcacatttattataagccccttttgcaattttcacgcatattaagaaaaatagataatgtatttaatatgttcatttgatatataaatgct |
316 |
Q |
| |
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||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43437132 |
tattacctctctcatttattataagccccttttgcgattttcacgcatattaagaaaaatagataatgtatttaatatgttcatttgatatataaatgct |
43437033 |
T |
|
| Q |
317 |
cataaaataccccgttgtatatagattttgtgttcaactatgacttcttgtctcccaagttattagtattaagtaggggtatatctgaaaaataacaagt |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
43437032 |
cataaaataccccgttgtatatagattttgtgttcaactatgacttcttgtctcccaagttattaatattaagtaggggtatatctgaaaaataacaagt |
43436933 |
T |
|
| Q |
417 |
gtatctagtaatttgaagtaggacttatgctaagagacaaatttttccga-aaaatgcttatatcagctttctttgtttatgtaggaatgatgaagctcg |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
43436932 |
gtatctagtaatttgaagtaggacttatgctaagagacaaatttttccgaaaaaatgcttatatcagctttctttgtttatataggaatgatgaagctcg |
43436833 |
T |
|
| Q |
516 |
gcaacctctttctaggaaggtttctattcgatcctctaagataaatccatatcgctttgtcattgttatgcgactggttatcctttgcnnnnnnnngcat |
615 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
43436832 |
gcaacctctttctaggaaggtttctattcgatcctctaagataaatccatatcgctttgtcattgttatgcgactggttatcctttgctttttcttgcat |
43436733 |
T |
|
| Q |
616 |
tatcgaataaccaatccagtgcgcagtgcatatccattatggttgatatcagttatgtgcgagatttgctttgccatatcctggatattggatcaattcc |
715 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43436732 |
tatcgaataaccaatccagtgcgcagtgcatatccattatggttgatatcagttatgtgcgagatttgctttgccatatcctggatattggatcaattcc |
43436633 |
T |
|
| Q |
716 |
ctaagtggcttcctatcaaccgtgaaacatatctcgacagacttgcactgaggtaagaccttttaaacttcatcgtgacttatannnnnnnnnnnncaat |
815 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
43436632 |
ctaagtggcttcctatcaaccgtgaaacatatctcgacagacttgcactgaggtaagaccttttaaacttca-cgtgacttatattttttatttttcaat |
43436534 |
T |
|
| Q |
816 |
ctgatgttttttctattccaaaatacgtgtctggtgtatagatatgatcaggaaggagaaccatcccaactagcagctgttgacatttttgtcagcactg |
915 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
43436533 |
ctgatgtttttt-tattccaaaatacgtgtctggtgtatagatatgatcaggaaggagaaccatcccagctagcagctgttgacatttttgtcagcactg |
43436435 |
T |
|
| Q |
916 |
ttgacccattaaaggagcctccgcttgt |
943 |
Q |
| |
|
||||||| |||||||||||||||||||| |
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|
| T |
43436434 |
ttgacccgttaaaggagcctccgcttgt |
43436407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 171; Significance: 2e-91; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 479 - 789
Target Start/End: Complemental strand, 13826865 - 13826556
Alignment:
| Q |
479 |
tcagctttctttgtttatgtaggaatgatgaagctcggcaacctctttctaggaaggtttctattcgatcctctaagataaatccatatcgctttgtcat |
578 |
Q |
| |
|
|||| |||||||||| ||| |||||||||||||||||||| |||||||| |||||||||||||||| ||| |||| ||||||||| ||||| || ||||| |
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| T |
13826865 |
tcagttttctttgtt-atgcaggaatgatgaagctcggcagcctctttccaggaaggtttctattccatcatctaggataaatccttatcgattggtcat |
13826767 |
T |
|
| Q |
579 |
tgttatgcgactggttatcctttgcnnnnnnnngcattatcgaataaccaatccagtgcgcagtgcatatccattatggttgatatcagttatgtgcgag |
678 |
Q |
| |
|
|||| ||||||||||| |||||||| |||||||||| |||| ||||| || |||| ||||||| ||||||||||| |||||||||| |||||| |
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| T |
13826766 |
tgttctgcgactggttgtcctttgcattttcttgcattatcgattaacaaatccggtccgcaatgcatatgcattatggttggtatcagttatatgcgag |
13826667 |
T |
|
| Q |
679 |
atttgctttgccatatcctggatattggatcaattccctaagtggcttcctatcaaccgtgaaacatatctcgacagacttgcactgaggtaagaccttt |
778 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||| |
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|
| T |
13826666 |
atttggtttgccatatcctggatattggatcaattccctaagtggcttcctgtcaaccgcgaaacatatctcgacagacttgcactgaggtacagccttt |
13826567 |
T |
|
| Q |
779 |
taaacttcatc |
789 |
Q |
| |
|
||||| ||||| |
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|
| T |
13826566 |
taaacatcatc |
13826556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 52 - 385
Target Start/End: Complemental strand, 13827683 - 13827361
Alignment:
| Q |
52 |
tgggaaatatagcgtggaaagaaagagttgacgcgtggaagatgaagaaggaaaagaatgctgttccaatgagctcaagccaagcttcttctgaaagagg |
151 |
Q |
| |
|
|||| ||| |||| |||| |||||||||||||| |||||||||||| ||||||||||||| ||| |||||| || |||||||| ||||||||||||| |
|
|
| T |
13827683 |
tgggcaatgtagcatggagagaaagagttgacggctggaagatgaagccagaaaagaatgctgctccgatgagcacaggccaagctgcttctgaaagagg |
13827584 |
T |
|
| Q |
152 |
cgatggagatgttgattccagatctgatgtaccagttgatgattcgttgttgttagtatttcctttattacctctcacatttattataagccccttttgc |
251 |
Q |
| |
|
| ||||||| ||||| |||||||||||| | | ||||||||| ||||||| ||||||||||||| || |||| |||||||||| ||||||||| | |
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| T |
13827583 |
ggctggagatattgatggcagatctgatgtccttgctgatgattcattgttgtgagtatttcctttactatctctgttatttattatatgccccttttcc |
13827484 |
T |
|
| Q |
252 |
aattttcacgcatattaagaaaaatagataatgtatttaatatgttcatttgatatataaatgctcataaaataccccgttgtatatagattttgtgttc |
351 |
Q |
| |
|
||||||||| |||| ||||||| ||||||||||||| ||| ||| ||||| ||||||| | |||||| || |||| |||| ||||||| |
|
|
| T |
13827483 |
aattttcacatatatcaagaaaagtagataatgtattcaatgtgtccatttcatatatagaggctcat-----------ttatatacagatgatgtgttc |
13827395 |
T |
|
| Q |
352 |
aactatgacttcttgtctcccaagttattagtat |
385 |
Q |
| |
|
|||| | ||||||||||||||||||||||||||| |
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|
| T |
13827394 |
aactctaacttcttgtctcccaagttattagtat |
13827361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 850 - 937
Target Start/End: Complemental strand, 13826498 - 13826411
Alignment:
| Q |
850 |
tgtatagatatgatcaggaaggagaaccatcccaactagcagctgttgacatttttgtcagcactgttgacccattaaaggagcctcc |
937 |
Q |
| |
|
|||| |||||||||| ||||||||||||||| |||||||| ||||| |||||||||||||| || |||||||| |||||||||||||| |
|
|
| T |
13826498 |
tgtacagatatgatcgggaaggagaaccatctcaactagcggctgtcgacatttttgtcagtaccgttgacccgttaaaggagcctcc |
13826411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 496 - 603
Target Start/End: Original strand, 43947728 - 43947835
Alignment:
| Q |
496 |
tgtaggaatgatgaagctcggcaacctctttctaggaaggtttctattcgatcctctaagataaatccatatcgctttgtcattgttatgcgactggtta |
595 |
Q |
| |
|
|||| |||||||| |||||||||||| || || |||||||||||||||| |||||||| ||||| |||||||||| | ||||||||| ||| | |||||| |
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|
| T |
43947728 |
tgtatgaatgatgtagctcggcaaccactatccaggaaggtttctattccatcctctaggataattccatatcgcatggtcattgttctgcaattggtta |
43947827 |
T |
|
| Q |
596 |
tcctttgc |
603 |
Q |
| |
|
|||||||| |
|
|
| T |
43947828 |
tcctttgc |
43947835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 5e-31; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 498 - 755
Target Start/End: Original strand, 9477055 - 9477312
Alignment:
| Q |
498 |
taggaatgatgaagctcggcaacctctttctaggaaggtttctattcgatcctctaagataaatccatatcgctttgtcattgttatgcgactggttatc |
597 |
Q |
| |
|
|||||||||||||||||| ||||| ||||| |||||||||||||||| ||| |||| ||||||||||||||| | ||||||||| |||| || |||||| |
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|
| T |
9477055 |
taggaatgatgaagctcgacaaccactttcgaggaaggtttctattccatcttctaggataaatccatatcgtatggtcattgttctgcggcttgttatc |
9477154 |
T |
|
| Q |
598 |
ctttgcnnnnnnnngcattatcgaataaccaatccagtgcgcagtgcatatccattatggttgatatcagttatgtgcgagatttgctttgccatatcct |
697 |
Q |
| |
|
||| | ||| || ||||| || ||||| || | || ||| ||| | || ||||| ||||||||||| || || |||| |||||| | || | |
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| T |
9477155 |
cttgtcattttcttgcactaccgaattacaaatcccgtacccaatgcttatgcgttgtggttaatatcagttatatgtgaagtttggtttgccttttctt |
9477254 |
T |
|
| Q |
698 |
ggatattggatcaattccctaagtggcttcctatcaaccgtgaaacatatctcgacag |
755 |
Q |
| |
|
|||| |||||||| ||||| |||||||||||| | ||||||||||||||||| ||||| |
|
|
| T |
9477255 |
ggatcttggatcagttccccaagtggcttcctgtgaaccgtgaaacatatctggacag |
9477312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 855 - 934
Target Start/End: Original strand, 9477691 - 9477770
Alignment:
| Q |
855 |
agatatgatcaggaaggagaaccatcccaactagcagctgttgacatttttgtcagcactgttgacccattaaaggagcc |
934 |
Q |
| |
|
|||||||||| |||||||||||| || || ||||||| ||||||||||| ||||| |||||||| || ||||||||||| |
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|
| T |
9477691 |
agatatgatcgggaaggagaaccttcacagttagcagccgttgacattttcgtcagtactgttgatccgttaaaggagcc |
9477770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 232 - 288
Target Start/End: Complemental strand, 3865880 - 3865824
Alignment:
| Q |
232 |
ttattataagccccttttgcaattttcacgcatattaagaaaaatagataatgtatt |
288 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||||||||| ||||| || |||||| |
|
|
| T |
3865880 |
ttattataagcctcttttgcaattttcacatatattaagaagaataggtagtgtatt |
3865824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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