View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9000_low_50 (Length: 255)

Name: NF9000_low_50
Description: NF9000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9000_low_50
NF9000_low_50
[»] chr7 (8 HSPs)
chr7 (1-178)||(16844725-16844902)
chr7 (39-240)||(16838590-16838799)
chr7 (144-240)||(18328612-18328707)
chr7 (31-80)||(18328461-18328510)
chr7 (31-75)||(22037979-22038023)
chr7 (28-102)||(18324150-18324224)
chr7 (34-79)||(22011860-22011905)
chr7 (31-64)||(22040898-22040931)
[»] chr3 (1 HSPs)
chr3 (135-240)||(3867154-3867259)
[»] chr5 (1 HSPs)
chr5 (39-80)||(3233444-3233485)


Alignment Details
Target: chr7 (Bit Score: 158; Significance: 4e-84; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 16844902 - 16844725
Alignment:
Q  1 tattgatagtacatggcaggacggaccaggaatgataggaagaaagaaacgaagaaagaggcttattgcagctacaattgttttagttatagcactcatt 100  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  16844902 tattgatagtacatggcaggacggacgaggaatgatgggaagaaagaaacgaagaaagaggcttattgcagctacaattgttttagttatagcaatcatt 16844803  T
Q  101 ttctaggaaatttatttcccttttgacatctatgttttaggagtatgttctacagctcaactctttgttgaacttcaa 178  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  16844802 ttctaggaaatttatttcccttttgatatctatgttttaggagtatgttctacaactcaactctttgttgaacttcaa 16844725  T

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Target: chr7; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 39 - 240
Target Start/End: Complemental strand, 16838799 - 16838590
Alignment:
Q  39 gaagaaagaaacgaagaaagaggcttattgcagctacaattgttttagttatagcactcattttctaggaaatttatttcccttttgacatctatgtttt 138  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  16838799 gaagaaagaaacgaagaaagaggcttattgcagctaaaattgttttggttatagcactcattttctaggaaatttatttcccttttgatatctatgtttt 16838700  T
Q  139 aggagtatgtt----ctacagctcaactctttgttgaacttcaatttgactcttttatatgcaat-----ttaagtgcacttttataggaccatttggtt 229  Q
    |||||||||||    ||||||||||| ||   |||||||||||| ||||||||||||||||||||     ||||||||| |||||||||||||||||| |    
T  16838699 aggagtatgtttgttctacagctcaagtcaa-gttgaacttcaagttgactcttttatatgcaatgtaatttaagtgcaattttataggaccatttgggt 16838601  T
Q  230 atgataagaat 240  Q
    |||||||||||    
T  16838600 atgataagaat 16838590  T

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Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 144 - 240
Target Start/End: Original strand, 18328612 - 18328707
Alignment:
Q  144 tatgttctacagctcaactctttgttgaacttcaatttgactcttttatatgcaatttaagtgcacttttataggaccatttggttatgataagaat 240  Q
    ||||||||||| || ||||||||||||| |||||| |  ||||||||||||||||||| |||||| ||||||||||| |||||| ||||||||||||    
T  18328612 tatgttctacaactaaactctttgttgatcttcaagtctactcttttatatgcaatttgagtgca-ttttataggactatttgggtatgataagaat 18328707  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 80
Target Start/End: Original strand, 18328461 - 18328510
Alignment:
Q  31 aatgataggaagaaagaaacgaagaaagaggcttattgcagctacaattg 80  Q
    ||||| |||||||||||||||||||||||||||||||| || ||||||||    
T  18328461 aatgacaggaagaaagaaacgaagaaagaggcttattgtagttacaattg 18328510  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 75
Target Start/End: Original strand, 22037979 - 22038023
Alignment:
Q  31 aatgataggaagaaagaaacgaagaaagaggcttattgcagctac 75  Q
    ||||||| ||||||||||| |||||||||||||||||| ||||||    
T  22037979 aatgatacgaagaaagaaaagaagaaagaggcttattgtagctac 22038023  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 102
Target Start/End: Original strand, 18324150 - 18324224
Alignment:
Q  28 aggaatgataggaagaaagaaacgaagaaagaggcttattgcagctacaattgttttagttatagcactcatttt 102  Q
    |||||| |||||||||||||||||||||||  ||||| ||| ||||| ||||  || |||||||| ||| |||||    
T  18324150 aggaatcataggaagaaagaaacgaagaaatgggctttttgtagctaaaattccttcagttatagtactaatttt 18324224  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 79
Target Start/End: Original strand, 22011860 - 22011905
Alignment:
Q  34 gataggaagaaagaaacgaagaaagaggcttattgcagctacaatt 79  Q
    |||||||||||||||| | |||||| ||||||||| ||||||||||    
T  22011860 gataggaagaaagaaaagtagaaagcggcttattgtagctacaatt 22011905  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 64
Target Start/End: Original strand, 22040898 - 22040931
Alignment:
Q  31 aatgataggaagaaagaaacgaagaaagaggctt 64  Q
    ||||||||||||||||||| ||||||||||||||    
T  22040898 aatgataggaagaaagaaaagaagaaagaggctt 22040931  T

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Target: chr3 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 135 - 240
Target Start/End: Original strand, 3867154 - 3867259
Alignment:
Q  135 ttttaggagtatgttctacagctcaactctttgttgaacttcaatttgactcttttatatgcaatttaagtgcacttttataggaccatttggttatgat 234  Q
    |||||||| ||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||| |||||||||||| ||||||    
T  3867154 ttttaggattatgttctacagctcaactctttgttgaacttcaagttgactctgtaatatgcaatttaagtgcacttttacaggaccatttgggtatgat 3867253  T
Q  235 aagaat 240  Q
    ||||||    
T  3867254 aagaat 3867259  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 80
Target Start/End: Complemental strand, 3233485 - 3233444
Alignment:
Q  39 gaagaaagaaacgaagaaagaggcttattgcagctacaattg 80  Q
    ||||||||||| |||||||||||||||||| ||| |||||||    
T  3233485 gaagaaagaaaagaagaaagaggcttattgtagccacaattg 3233444  T

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