View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9000_low_58 (Length: 223)
Name: NF9000_low_58
Description: NF9000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9000_low_58 |
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Alignment Details
Target: chr8 (Bit Score: 141; Significance: 4e-74; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 13 - 169
Target Start/End: Original strand, 31126522 - 31126678
Alignment:
| Q |
13 |
ggagcagagatgtagcaaaagagaaatgcaaagtgatatggttcattgggagttaaaaaccgggtgaagaaggtgttttgaagagcaaagaggtgttttg |
112 |
Q |
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| T |
31126522 |
ggagaagagatgtagcaaaagagaaatgcaaagtgatatggttcattgggagttaaaaaccgggtgaagaaggtgttttgaagagcaaagaggtgttttg |
31126621 |
T |
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| Q |
113 |
aaagtttcgaagcacacaaacgtgtaaggctgtaactgacgacatattagttccatg |
169 |
Q |
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| T |
31126622 |
aaagttttgtagcacacaaacgtgtaaggccgtaactgacgacatattagttccatg |
31126678 |
T |
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Target: chr8; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 159 - 205
Target Start/End: Original strand, 31128222 - 31128268
Alignment:
| Q |
159 |
ttagttccatgcttagttttataaaacaaacgatccaagagatatct |
205 |
Q |
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| T |
31128222 |
ttagttccatgcttagttttataaaacaaacgatccaagagatatct |
31128268 |
T |
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