View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9000_low_61 (Length: 221)
Name: NF9000_low_61
Description: NF9000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9000_low_61 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 182; Significance: 1e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 18 - 203
Target Start/End: Complemental strand, 3000194 - 3000009
Alignment:
| Q |
18 |
atacatctgttacaacagtattgatagaatatgtgtattcatgtagctataaatctaataaaagataaaatgatcttgctttggtttctagtttttgtaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3000194 |
atacatctgttacaacagtattgatagaatatgtgtattcatgtagctataaatctaataaaagataaaatgatcttgctttggtttctagtttttgtaa |
3000095 |
T |
|
| Q |
118 |
aagaaatgtaggtcaaatcaagaggtaatgttttgcctcagatgcatttcctttttcagtaaggcaacttccaaatcattcgaaac |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3000094 |
aagaaatgtaggtcaaatcaagaggtaatgtgttgcctcagatgcatttcctttttcagtaaggcaacttccaaatcattcgaaac |
3000009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University