View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9000_low_65 (Length: 212)
Name: NF9000_low_65
Description: NF9000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9000_low_65 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 176; Significance: 5e-95; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 14 - 193
Target Start/End: Original strand, 54460 - 54639
Alignment:
| Q |
14 |
cagagagcaaagcagggtgatagtaagtggttatgttgatccaaacaaggtgttaaagagaataaaaagcactgggaaagtaagagctcaattttggcct |
113 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54460 |
cagaaagcaaagcagggtgatagtaagtggttatgttgatccaaacaaggtgttaaagagaataaaaagcactgggaaagtaagagctcaattttggcct |
54559 |
T |
|
| Q |
114 |
tatgttgaacagcaacttgtgtactatccttatgcctatggagcctatgacaaaagggcaccctctggatttgttagaaa |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54560 |
tatgttgaacagcaacttgtgtactatccttatgcctatggagcctatgacaaaagggcaccctctggatttgttagaaa |
54639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 119
Target Start/End: Original strand, 31888394 - 31888494
Alignment:
| Q |
19 |
agcaaagcagggtgatagtaagtggttatgttgatccaaacaaggtgttaaagagaataaaaagcactgggaaagtaagagctcaattttggccttatgt |
118 |
Q |
| |
|
||||||||| ||| | ||| | ||||| |||||||||||||| |||||| || ||| ||| |||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
31888394 |
agcaaagcaaggtaacagtgaatggttttgttgatccaaacatggtgttgaaaagagtaagaagcactgggaagaaaagagctgaattttggccttatgt |
31888493 |
T |
|
| Q |
119 |
t |
119 |
Q |
| |
|
| |
|
|
| T |
31888494 |
t |
31888494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University