View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9000_low_7 (Length: 737)

Name: NF9000_low_7
Description: NF9000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9000_low_7
NF9000_low_7
[»] chr4 (23 HSPs)
chr4 (8-721)||(51719455-51720164)
chr4 (298-419)||(24974100-24974221)
chr4 (343-422)||(33164504-33164583)
chr4 (298-423)||(12586752-12586876)
chr4 (306-422)||(45237411-45237527)
chr4 (298-422)||(55527867-55527991)
chr4 (6-61)||(628452-628507)
chr4 (298-419)||(36501819-36501940)
chr4 (338-419)||(40312788-40312869)
chr4 (338-419)||(40322864-40322945)
chr4 (343-423)||(36172164-36172244)
chr4 (306-420)||(23283737-23283851)
chr4 (345-422)||(34235705-34235782)
chr4 (238-422)||(628088-628272)
chr4 (346-422)||(28798147-28798223)
chr4 (238-306)||(40923737-40923805)
chr4 (367-422)||(28796620-28796675)
chr4 (345-392)||(33161660-33161707)
chr4 (359-422)||(47177912-47177975)
chr4 (248-306)||(628255-628313)
chr4 (344-414)||(36174579-36174649)
chr4 (349-422)||(38677667-38677740)
chr4 (338-423)||(54208179-54208264)
[»] chr1 (17 HSPs)
chr1 (6-422)||(28446198-28446608)
chr1 (6-353)||(49030302-49030644)
chr1 (298-422)||(33617644-33617768)
chr1 (298-422)||(33401408-33401532)
chr1 (308-422)||(28474792-28474906)
chr1 (338-422)||(39650196-39650280)
chr1 (344-422)||(28475982-28476060)
chr1 (361-422)||(5602944-5603005)
chr1 (335-422)||(35563364-35563447)
chr1 (357-422)||(3792296-3792361)
chr1 (346-423)||(45691050-45691127)
chr1 (345-422)||(50065478-50065555)
chr1 (335-395)||(35563532-35563592)
chr1 (347-423)||(50069237-50069313)
chr1 (347-422)||(3792560-3792635)
chr1 (350-423)||(45691196-45691269)
chr1 (350-423)||(45691338-45691411)
[»] chr3 (30 HSPs)
chr3 (6-422)||(53814228-53814639)
chr3 (149-422)||(44430418-44430689)
chr3 (215-306)||(4970742-4970833)
chr3 (298-422)||(15040681-15040805)
chr3 (299-422)||(19872096-19872219)
chr3 (298-416)||(7665739-7665857)
chr3 (349-422)||(50663875-50663948)
chr3 (298-416)||(34082845-34082963)
chr3 (6-329)||(13840390-13840709)
chr3 (343-422)||(6162681-6162760)
chr3 (339-422)||(42947375-42947458)
chr3 (6-61)||(39685544-39685599)
chr3 (343-422)||(53827660-53827739)
chr3 (147-308)||(39685307-39685466)
chr3 (349-422)||(54528961-54529034)
chr3 (14-58)||(3860615-3860659)
chr3 (306-361)||(35069249-35069304)
chr3 (344-422)||(4969875-4969953)
chr3 (138-184)||(21566861-21566907)
chr3 (377-421)||(13843626-13843670)
chr3 (343-423)||(15042005-15042085)
chr3 (318-422)||(39645774-39645878)
chr3 (318-422)||(39685212-39685316)
chr3 (358-422)||(40517537-40517601)
chr3 (6-49)||(21566700-21566743)
chr3 (343-422)||(42381615-42381694)
chr3 (349-423)||(8150168-8150242)
chr3 (338-396)||(42993592-42993650)
chr3 (349-394)||(30533883-30533928)
chr3 (349-422)||(47064864-47064937)
[»] chr5 (21 HSPs)
chr5 (6-416)||(6705715-6706107)
chr5 (298-423)||(759159-759284)
chr5 (298-422)||(28677886-28678010)
chr5 (298-422)||(11135741-11135865)
chr5 (306-423)||(34016001-34016118)
chr5 (350-422)||(17644606-17644678)
chr5 (343-418)||(30491794-30491869)
chr5 (344-422)||(34017619-34017697)
chr5 (349-422)||(6158948-6159020)
chr5 (339-414)||(19401994-19402069)
chr5 (298-392)||(30489753-30489847)
chr5 (298-419)||(5506645-5506766)
chr5 (349-422)||(17636344-17636417)
chr5 (343-422)||(6702370-6702449)
chr5 (343-422)||(33144183-33144262)
chr5 (343-422)||(40008712-40008791)
chr5 (349-422)||(1145141-1145214)
chr5 (361-422)||(6636919-6636980)
chr5 (349-422)||(7164754-7164827)
chr5 (349-394)||(7826133-7826178)
chr5 (143-188)||(39224138-39224183)
[»] chr6 (14 HSPs)
chr6 (123-422)||(17436322-17436619)
chr6 (338-422)||(14153354-14153438)
chr6 (6-188)||(25403673-25403853)
chr6 (308-422)||(32274184-32274298)
chr6 (343-422)||(35060894-35060973)
chr6 (313-384)||(31483681-31483752)
chr6 (341-422)||(31522532-31522613)
chr6 (9-50)||(17436286-17436327)
chr6 (282-423)||(24326943-24327084)
chr6 (341-421)||(4321735-4321815)
chr6 (349-422)||(806545-806618)
chr6 (238-306)||(25403901-25403969)
chr6 (146-188)||(24359144-24359185)
chr6 (349-406)||(7203956-7204013)
[»] chr2 (19 HSPs)
chr2 (309-423)||(8273244-8273358)
chr2 (6-188)||(942910-943090)
chr2 (344-422)||(12967270-12967349)
chr2 (357-423)||(22787998-22788064)
chr2 (135-188)||(24929087-24929140)
chr2 (339-419)||(11712961-11713041)
chr2 (336-422)||(22727662-22727748)
chr2 (238-418)||(25678782-25678962)
chr2 (238-329)||(943138-943229)
chr2 (343-422)||(11573633-11573712)
chr2 (343-422)||(18387241-18387320)
chr2 (367-422)||(25389873-25389928)
chr2 (377-422)||(20685006-20685051)
chr2 (349-422)||(37893013-37893086)
chr2 (22-101)||(24928982-24929059)
chr2 (22-61)||(25678596-25678635)
chr2 (248-306)||(24929186-24929244)
chr2 (135-181)||(25678695-25678741)
chr2 (338-423)||(2154261-2154346)
[»] chr7 (19 HSPs)
chr7 (298-419)||(5126-5247)
chr7 (306-423)||(19365357-19365474)
chr7 (301-418)||(38386178-38386295)
chr7 (286-422)||(5061671-5061806)
chr7 (6-61)||(41798906-41798961)
chr7 (6-61)||(44552418-44552473)
chr7 (259-422)||(44552026-44552189)
chr7 (361-422)||(28138759-28138820)
chr7 (345-422)||(38790884-38790962)
chr7 (349-422)||(26009369-26009442)
chr7 (342-422)||(31823589-31823669)
chr7 (376-422)||(33839474-33839520)
chr7 (146-184)||(41798791-41798829)
chr7 (349-422)||(26011958-26012031)
chr7 (135-188)||(44552309-44552362)
chr7 (338-422)||(1537240-1537324)
chr7 (343-423)||(44552701-44552781)
chr7 (361-422)||(28139452-28139513)
chr7 (298-419)||(38047649-38047770)
[»] chr8 (11 HSPs)
chr8 (298-422)||(5967191-5967315)
chr8 (206-422)||(9418587-9418803)
chr8 (298-422)||(34279515-34279639)
chr8 (6-188)||(9387545-9387725)
chr8 (331-422)||(31762241-31762332)
chr8 (339-422)||(33220782-33220865)
chr8 (238-353)||(9387824-9387939)
chr8 (361-422)||(3588562-3588623)
chr8 (349-422)||(43640978-43641051)
chr8 (238-306)||(9387773-9387841)
chr8 (360-422)||(3588340-3588402)
[»] scaffold0041 (2 HSPs)
scaffold0041 (6-60)||(23829-23883)
scaffold0041 (135-422)||(23487-23772)
[»] scaffold0246 (3 HSPs)
scaffold0246 (6-102)||(2493-2587)
scaffold0246 (238-422)||(2747-2931)
scaffold0246 (146-188)||(2625-2667)
[»] scaffold1063 (1 HSPs)
scaffold1063 (341-422)||(1475-1556)


Alignment Details
Target: chr4 (Bit Score: 483; Significance: 0; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 8 - 721
Target Start/End: Original strand, 51719455 - 51720164
Alignment:
Q  8 caatgaatggttgtaccaaaattattattgaatgattgcatattcactaaacagtaacaaatggaacaaggcagcagcagctactgccactgccactgtc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||  | | |||||||||||||| |||   |||||||| |||           
T  51719455 caatgaatggttgtaccaaaattattattgaatgattgcatattcactaaagagggatagatggaacaaggcagaagc---tactgcca-tgc------- 51719543  T
Q  108 acgtaagtctgctgcgcatataacatcagcaccaacgcgagttaactcacactagtgttaaaactagcgtgacttaactcagacgctagtaaaattctgt 207  Q
        |||||||||| ||||||| |||||||||||| | |||||||||||  |||||||||||||| | |||||||||||||  ||||||| |||||||||    
T  51719544 ----aagtctgctgtgcatatagcatcagcaccaatgtgagttaactcatgctagtgttaaaactggtgtgacttaactca--cgctagttaaattctgt 51719637  T
Q  208 tttggtgcttgctttgtacctgttttatgcctagcgtggtttaagtcactcaacgtgacttaagttgcgttacattttgtactaacgtgagttaagtcac 307  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51719638 tttggtgcttgctttgtaccagttttatgcctagcgtggtttaagtcacgcaacgtgacttaagttgcgttacattttgtactaacgtgagttaagtcac 51719737  T
Q  308 gcaacatatgttaagtcacgttgtaatatgcactaacgcatgttaacatacgtaggggtattttggttatttactttgagaatgagcgaattcatttggg 407  Q
    ||||||||||||| || |||||||||| | || |||||||||||||| ||||||||||||||| ||||||||||||||  ||| ||||||| ||||||||    
T  51719738 gcaacatatgttacgttacgttgtaatttacattaacgcatgttaacttacgtaggggtatttcggttatttactttggaaataagcgaatccatttggg 51719837  T
Q  408 taatgagcagaattccggtgacatatctctctctacatcgagcat--------taagttaagtttggtagaaagagttagaacttaattactaggtaggt 499  Q
    |||| |||||||||| ||||| |||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||    
T  51719838 taataagcagaattcgggtgagatatctctctctacatcgagcatcttggggctaagttaagtttggtagaaagagttagaacttaattactaggtaggt 51719937  T
Q  500 agagttggggtgagaattaggccacgccagaaaagccaatcctgtctcgctggcttcactgatttcatccacccactcaacccaatgtatacactttccc 599  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51719938 agagttggggtgagaattaggccacgccagaaaagccaatcctgtctcgctggcttcactgatttcatccacccactcaacccaatgtatacactttccc 51720037  T
Q  600 tccctcatatcataatctatctatctctatctaccaccccataaggaaaagaa-----aacacaacacaacatgttatcactttgttcttcctcatccat 694  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||    
T  51720038 tccctcatatcataatctatctatctctatctaccaccccataaggaaaagaaaacacaacacaacacaacatgttatcactttgttcttcctcatccat 51720137  T
Q  695 ggctaaggcttccctcactctcccaac 721  Q
    |||||||||||||||||||||||||||    
T  51720138 ggctaaggcttccctcactctcccaac 51720164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 298 - 419
Target Start/End: Original strand, 24974100 - 24974221
Alignment:
Q  298 gttaagtcacgcaacatatgttaagtcacgttgtaatatgcactaacgcatgttaacatacgtaggggtattttggttatttactttgagaatgagcgaa 397  Q
    |||||||||||| || ||| |||||| || || |||| ||||||| ||||||||||||| |||||||| |||| ||| |||||||||| |||||||| ||    
T  24974100 gttaagtcacgctacttatcttaagttacattataatttgcactagcgcatgttaacatgcgtaggggcatttcggtcatttactttgggaatgagcaaa 24974199  T
Q  398 ttcatttgggtaatgagcagaa 419  Q
    | ||||||| ||||||||||||    
T  24974200 tccatttggataatgagcagaa 24974221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 343 - 422
Target Start/End: Original strand, 33164504 - 33164583
Alignment:
Q  343 acgcatgttaacatacgtaggggtattttggttatttactttgagaatgagcgaattcatttgggtaatgagcagaattc 422  Q
    |||||||||||||| |||||||| |||||||  |||||||||||||||||||| |  |||||||||||||||||||||||    
T  33164504 acgcatgttaacatgcgtaggggcattttggacatttactttgagaatgagcggaaccatttgggtaatgagcagaattc 33164583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 298 - 423
Target Start/End: Original strand, 12586752 - 12586876
Alignment:
Q  298 gttaagtcacgcaacatatgttaagtcacgttgtaatatgcactaacgcatgttaacatacgtaggggtattttggttatttactttgagaatgagcgaa 397  Q
    |||||||||||| || ||| |||||| ||||| |||| ||||||| ||||||||||||| |||||||  |||| ||| ||||| ||||  ||||||||||    
T  12586752 gttaagtcacgctacttatcttaagttacgttataatttgcactagcgcatgttaacatgcgtagggacatttcggtcattta-tttggaaatgagcgaa 12586850  T
Q  398 ttcatttgggtaatgagcagaattcc 423  Q
    | |||||| ||||||||| |||||||    
T  12586851 tccatttgagtaatgagctgaattcc 12586876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 306 - 422
Target Start/End: Complemental strand, 45237527 - 45237411
Alignment:
Q  306 acgcaacatatgttaagtcacgttgtaatatgcactaacgcatgttaacatacgtaggggtattttggttatttactttgagaatgagcgaattcatttg 405  Q
    ||||||| ||| |||||| ||||| |||| ||||||| ||||||||||||| | |||||| ||||  ||||||||||||   ||| ||||||| ||||||    
T  45237527 acgcaacgtatcttaagttacgttataatttgcactagcgcatgttaacatgcataggggcatttcagttatttactttagaaataagcgaatccatttg 45237428  T
Q  406 ggtaatgagcagaattc 422  Q
     ||||||||||||||||    
T  45237427 agtaatgagcagaattc 45237411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 298 - 422
Target Start/End: Original strand, 55527867 - 55527991
Alignment:
Q  298 gttaagtcacgcaacatatgttaagtcacgttgtaatatgcactaacgcatgttaacatacgtaggggtattttggttatttactttgagaatgagcgaa 397  Q
    |||||||||||| || ||| |||||| ||||| |||| ||||||| ||| ||||||||| |||||||| |||| ||| |||| |||||  ||||||||||    
T  55527867 gttaagtcacgctacttatcttaagttacgttataatttgcactagcgcgtgttaacatgcgtaggggcatttcggtcatttgctttggaaatgagcgaa 55527966  T
Q  398 ttcatttgggtaatgagcagaattc 422  Q
    | |||||   |||||||||||||||    
T  55527967 tccatttaaataatgagcagaattc 55527991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 6 - 61
Target Start/End: Complemental strand, 628507 - 628452
Alignment:
Q  6 atcaatgaatggttgtaccaaaattattattgaatgattgcatattcactaaacag 61  Q
    ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||    
T  628507 atcaatgaatggttgtaccaaaattattattgaataattgcatgttcactaaacag 628452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 298 - 419
Target Start/End: Original strand, 36501819 - 36501940
Alignment:
Q  298 gttaagtcacgcaacatatgttaagtcacgttgtaatatgcactaacgcatgttaacatacgtaggggtattttggttatttactttgagaatgagcgaa 397  Q
    |||||||||||  || ||| || ||| ||||| |||| ||||| | ||||||| ||||| |||||||| |||| | | |||||||||| |||||||||||    
T  36501819 gttaagtcacgttacttatcttgagttacgttataatttgcaccagcgcatgtcaacatgcgtaggggcatttcgatcatttactttgggaatgagcgaa 36501918  T
Q  398 ttcatttgggtaatgagcagaa 419  Q
    | ||| ||||||||||||||||    
T  36501919 tccatctgggtaatgagcagaa 36501940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 338 - 419
Target Start/End: Original strand, 40312788 - 40312869
Alignment:
Q  338 cactaacgcatgttaacatacgtaggggtattttggttatttactttgagaatgagcgaattcatttgggtaatgagcagaa 419  Q
    ||||| |||||||||||||||||| | ||||||| |   |||||||||  |||||||||| |||||||||||||||||||||    
T  40312788 cactagcgcatgttaacatacgtaagagtattttagacttttactttggaaatgagcgaaatcatttgggtaatgagcagaa 40312869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 338 - 419
Target Start/End: Original strand, 40322864 - 40322945
Alignment:
Q  338 cactaacgcatgttaacatacgtaggggtattttggttatttactttgagaatgagcgaattcatttgggtaatgagcagaa 419  Q
    ||||| |||||||||||||||||| | ||||||| |   |||||||||  |||||||||| |||||||||||||||||||||    
T  40322864 cactagcgcatgttaacatacgtaagagtattttagacttttactttggaaatgagcgaaatcatttgggtaatgagcagaa 40322945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 343 - 423
Target Start/End: Complemental strand, 36172244 - 36172164
Alignment:
Q  343 acgcatgttaacatacgtaggggtattttggttatttactttgagaatgagcgaattcatttgggtaatgagcagaattcc 423  Q
    |||||||||||||||| ||||||||||||||   ||||||||| ||||||| | |   |||||||||||||||||||||||    
T  36172244 acgcatgttaacatacataggggtattttggacttttactttgggaatgagtggaactatttgggtaatgagcagaattcc 36172164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 306 - 420
Target Start/End: Original strand, 23283737 - 23283851
Alignment:
Q  306 acgcaacatatgttaagtcacgttgtaatatgcactaacgcatgttaacatacgtaggggtattttggttatttactttgagaatgagcgaattcatttg 405  Q
    ||||||| ||| |||||| | |||||||| ||||||| | ||||||||||| | || | | |||| | | ||||||||||| |||||||||||||||||     
T  23283737 acgcaacgtatcttaagttatgttgtaatttgcactagcacatgttaacatgcataagagcatttcgatcatttactttgaaaatgagcgaattcattta 23283836  T
Q  406 ggtaatgagcagaat 420  Q
    |||||| || |||||    
T  23283837 ggtaataagtagaat 23283851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 345 - 422
Target Start/End: Original strand, 34235705 - 34235782
Alignment:
Q  345 gcatgttaacatacgtaggggtattttggttatttactttgagaatgagcgaattcatttgggtaatgagcagaattc 422  Q
    |||||||||||| |||| ||| |||| ||| |||||||||  ||||||||| |  ||||||||||||||||| |||||    
T  34235705 gcatgttaacatgcgtatgggcatttcggtcatttactttaggaatgagcggaaccatttgggtaatgagcataattc 34235782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 238 - 422
Target Start/End: Complemental strand, 628272 - 628088
Alignment:
Q  238 ctagcgtggtttaagtcactcaacgtgacttaagttgcgttacattttgtactaacgtgagttaagtcacgcaacatatgttaagtcacgttgtaatatg 337  Q
    ||||||||  ||||||||   |||||||||||||||| ||| ||| ||| |||| ||| | ||||||||| | || | | ||||||||| ||  ||| ||    
T  628272 ctagcgtgacttaagtcaagtaacgtgacttaagttgtgtttcatattgcactagcgttacttaagtcactctacctgtcttaagtcacattccaatttg 628173  T
Q  338 cactaacgcatgttaacatacgtaggggtattttggttatttactttgagaatgagcgaattcatttgggtaatgagcagaattc 422  Q
     |||| ||||||||||  | |||| |||||     ||  ||||||||  |||||||||||  |||||||||||||||||||||||    
T  628172 aactagcgcatgttaagttgcgtaagggtaaaaaagtcttttactttaggaatgagcgaaaccatttgggtaatgagcagaattc 628088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 346 - 422
Target Start/End: Original strand, 28798147 - 28798223
Alignment:
Q  346 catgttaacatacgtaggggtattttggttatttactttgagaatgagcgaattcatttgggtaatgagcagaattc 422  Q
    |||||||||||  | ||||| |||||||  |||||||||||||||||||||     |||||||||||||||||||||    
T  28798147 catgttaacatgtgcaggggcattttggacatttactttgagaatgagcgatactgtttgggtaatgagcagaattc 28798223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 238 - 306
Target Start/End: Original strand, 40923737 - 40923805
Alignment:
Q  238 ctagcgtggtttaagtcactcaacgtgacttaagttgcgttacattttgtactaacgtgagttaagtca 306  Q
    ||||||||  ||||||||  ||||||||||||| |||||||| |||||| |||| ||||| ||||||||    
T  40923737 ctagcgtgacttaagtcaagcaacgtgacttaaattgcgttaaattttgcactagcgtgatttaagtca 40923805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 367 - 422
Target Start/End: Complemental strand, 28796675 - 28796620
Alignment:
Q  367 attttggttatttactttgagaatgagcgaattcatttgggtaatgagcagaattc 422  Q
    |||||||  |||||||||||||||||||||  |  |||||||||||||||||||||    
T  28796675 attttggacatttactttgagaatgagcgatattgtttgggtaatgagcagaattc 28796620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 345 - 392
Target Start/End: Complemental strand, 33161707 - 33161660
Alignment:
Q  345 gcatgttaacatacgtaggggtattttggttatttactttgagaatga 392  Q
    ||||||||||||| | ||||||||||||| ||||||||||| ||||||    
T  33161707 gcatgttaacatatgcaggggtattttggatatttactttgggaatga 33161660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 359 - 422
Target Start/End: Complemental strand, 47177975 - 47177912
Alignment:
Q  359 gtaggggtattttggttatttactttgagaatgagcgaattcatttgggtaatgagcagaattc 422  Q
    |||||||||||||||| |||||||||| ||| |||||||  | ||||||| | |||||||||||    
T  47177975 gtaggggtattttggtaatttactttgggaacgagcgaaaccgtttgggtcaagagcagaattc 47177912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 248 - 306
Target Start/End: Complemental strand, 628313 - 628255
Alignment:
Q  248 ttaagtcactcaacgtgacttaagttgcgttacattttgtactaacgtgagttaagtca 306  Q
    ||||||||  |||||||||||||||||||||  |||||| |||| ||||| ||||||||    
T  628313 ttaagtcaagcaacgtgacttaagttgcgtttaattttgcactagcgtgacttaagtca 628255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 344 - 414
Target Start/End: Original strand, 36174579 - 36174649
Alignment:
Q  344 cgcatgttaacatacgtaggggtattttggttatttactttgagaatgagcgaattcatttgggtaatgag 414  Q
    ||||||||||||| ||||| || ||||||| | ||||||||| ||||||| |||  |||||| ||||||||    
T  36174579 cgcatgttaacatgcgtagtggcattttggatttttactttgggaatgagtgaaaccatttgagtaatgag 36174649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 349 - 422
Target Start/End: Original strand, 38677667 - 38677740
Alignment:
Q  349 gttaacatacgtaggggtattttggttatttactttgagaatgagcgaattcatttgggtaatgagcagaattc 422  Q
    |||||||| || |||| |||||||  ||||||||||| |||||| | || || ||||||||| |||||||||||    
T  38677667 gttaacatgcgcagggatattttgaatatttactttgggaatgaacaaaatcgtttgggtaaagagcagaattc 38677740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 338 - 423
Target Start/End: Complemental strand, 54208264 - 54208179
Alignment:
Q  338 cactaacgcatgttaacatacgtaggggtattttggttatttactttgagaatgagcgaattcatttgggtaatgagcagaattcc 423  Q
    |||||||| | |||||| |  |||||||||||||| | |||||||||| |||||||| ||  ||||||| ||| ||||| ||||||    
T  54208264 cactaacgtaagttaacttgagtaggggtattttgatcatttactttgggaatgagcaaaaccatttggataaagagcataattcc 54208179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 6 - 422
Target Start/End: Original strand, 28446198 - 28446608
Alignment:
Q  6 atcaatgaatggttgtaccaaaattattattgaatgattgcatattcactaaacagtaacaaatggaacaaggcagcagcagctactgccactgccactg 105  Q
    |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||   || ||||||||||| ||    
T  28446198 atcaatcaatggttgtaccaatattattattgaatgattgcatattcactaaacagggacagatggaacaaggcagcagc---tattgccactgccattg 28446294  T
Q  106 tcacgtaagtctgctgcgcatataacatcagcaccaacgcgagttaactcacactagtgttaaaactagcgtgacttaactcagacgctagtaaaattct 205  Q
     || | ||||||| |||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||| | |||||||    
T  28446295 ccatgcaagtctgatgcgcatatagcatcaacaccaacgcgagttaactcacgctagtgttaaaactagcgtgacttaactca--cgctactcaaattct 28446392  T
Q  206 gttttggtgcttgctttgtacctgttttatgcctagcgtggtttaagtcactcaacgtgacttaagttgcgttacattttgtactaacgtgagttaagtc 305  Q
    |||||||| |||||||||| || |||||||| ||||| ||||||||||||| ||  |||||||||||||||||||||||||||||| |||||||||||||    
T  28446393 gttttggtacttgctttgttccagttttatgtctagcatggtttaagtcacgcagtgtgacttaagttgcgttacattttgtactagcgtgagttaagtc 28446492  T
Q  306 acgcaacatatgttaagtcacgttgtaatatgcactaacgcatgttaacatacgtaggggtattttggttatttactttgagaatgagcgaattcatttg 405  Q
    ||||||| | |||||||| |||||||||| || |||| ||||||||||||| |||||||| ||||  || |||||||||| |||||||||||| ||||||    
T  28446493 acgcaacgtgtgttaagttacgttgtaat-tgtactagcgcatgttaacatgcgtaggggcatttcagtcatttactttgggaatgagcgaatccatttg 28446591  T
Q  406 ggtaatgagcagaattc 422  Q
    ||||||||||| |||||    
T  28446592 ggtaatgagcaaaattc 28446608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 6 - 353
Target Start/End: Complemental strand, 49030644 - 49030302
Alignment:
Q  6 atcaatgaatggttgtaccaaaattattattgaatgattgcatattcactaaacagtaacaaatggaacaaggcagcagcagctactgccactgccactg 105  Q
    |||||||||||| |||||||||||||||||||||| ||||||| ||||||||| || ||   | ||||||| |  |||||||||||||||| ||||||||    
T  49030644 atcaatgaatggctgtaccaaaattattattgaataattgcatgttcactaaataggaaatgaaggaacaaag--gcagcagctactgccattgccactg 49030547  T
Q  106 tcacgtaagtctgctgcgcatataacatcagcaccaacgcgagttaactcacactagtgttaaaactagcgtgacttaactcagacgctagtaaaattct 205  Q
     ||     |||||| |||   ||| ||  |||||||||| ||||||||||||  ||||||||||||||||||||||||||||  |||||| | |          
T  49030546 ccagtctggtctgcagcgtgcatagcagaagcaccaacgtgagttaactcac-gtagtgttaaaactagcgtgacttaactc--acgctactcattgaag 49030450  T
Q  206 gttttggtgcttgctttgtacctgttttatgcctagcgtggtttaagtcactcaacgtgacttaagttgcgttacattttgtactaacgtgagttaagtc 305  Q
     ||||||||| ||||||||||| |    ||  ||||||||  ||||||||  |||||||||||||||||||||  |||||| |||| ||||| |||||||    
T  49030449 tttttggtgcatgctttgtaccagagacataactagcgtgacttaagtcaagcaacgtgacttaagttgcgtttaattttgcactagcgtgacttaagtc 49030350  T
Q  306 acgcaacatatgttaagtcacgttgtaatatgcactaacgcatgttaa 353  Q
    | || || | | ||||||||||||  ||| ||||||| ||| ||||||    
T  49030349 aggctacctgtcttaagtcacgttccaatttgcactagcgcgtgttaa 49030302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 298 - 422
Target Start/End: Complemental strand, 33617768 - 33617644
Alignment:
Q  298 gttaagtcacgcaacatatgttaagtcacgttgtaatatgcactaacgcatgttaacatacgtaggggtattttggttatttactttgagaatgagcgaa 397  Q
    |||||||||||| || ||| |||||| ||||| |||| ||||||| ||||||||||||| | |||||| |||| ||| ||||||||||||||||||||||    
T  33617768 gttaagtcacgctacttatcttaagttacgttataatttgcactagcgcatgttaacatgcataggggcatttcggtcatttactttgagaatgagcgaa 33617669  T
Q  398 ttcatttgggtaatgagcagaattc 422  Q
    | ||||||||||||||||| |||||    
T  33617668 tccatttgggtaatgagcataattc 33617644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 298 - 422
Target Start/End: Complemental strand, 33401532 - 33401408
Alignment:
Q  298 gttaagtcacgcaacatatgttaagtcacgttgtaatatgcactaacgcatgttaacatacgtaggggtattttggttatttactttgagaatgagcgaa 397  Q
    |||||||||||| || ||| |||||| ||||| |||| ||||||| ||||||||||||| | || ||| |||| ||| ||||||||||||||||||||||    
T  33401532 gttaagtcacgctacttatcttaagttacgttataatttgcactagcgcatgttaacatgcataagggcatttcggtcatttactttgagaatgagcgaa 33401433  T
Q  398 ttcatttgggtaatgagcagaattc 422  Q
    | ||||||  ||||||||| |||||    
T  33401432 tccatttgactaatgagcaaaattc 33401408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 308 - 422
Target Start/End: Complemental strand, 28474906 - 28474792
Alignment:
Q  308 gcaacatatgttaagtcacgttgtaatatgcactaacgcatgttaacatacgtaggggtattttggttatttactttgagaatgagcgaattcatttggg 407  Q
    ||||| ||| |||||| |||||||||| |||| ||  |||||||||||| |||||||| ||||  || ||||| |||| ||||||| |||| ||||||||    
T  28474906 gcaacgtatcttaagttacgttgtaatttgcagtagtgcatgttaacatgcgtaggggcatttcagtcatttattttgggaatgagtgaatccatttggg 28474807  T
Q  408 taatgagcagaattc 422  Q
    |||||||||||||||    
T  28474806 taatgagcagaattc 28474792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 338 - 422
Target Start/End: Complemental strand, 39650280 - 39650196
Alignment:
Q  338 cactaacgcatgttaacatacgtaggggtattttggttatttactttgagaatgagcgaattcatttgggtaatgagcagaattc 422  Q
    ||||| ||||||||||||| |||||||| |||||||  |||||||||  |||||||||||  ||||| |||||||||||||||||    
T  39650280 cactagcgcatgttaacatgcgtaggggcattttggacatttactttaggaatgagcgaaaccatttaggtaatgagcagaattc 39650196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 344 - 422
Target Start/End: Original strand, 28475982 - 28476060
Alignment:
Q  344 cgcatgttaacatacgtaggggtattttggttatttactttgagaatgagcgaattcatttgggtaatgagcagaattc 422  Q
    |||||||||||||  ||||||| |||| | | |||||||||||||||||||| |  |||||||||||||||||||||||    
T  28475982 cgcatgttaacatgtgtaggggcatttcgatcatttactttgagaatgagcggaaccatttgggtaatgagcagaattc 28476060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 361 - 422
Target Start/End: Complemental strand, 5603005 - 5602944
Alignment:
Q  361 aggggtattttggttatttactttgagaatgagcgaattcatttgggtaatgagcagaattc 422  Q
    ||||| |||||||| |||||||||| |||||||| ||| ||||||||||| |||||||||||    
T  5603005 aggggcattttggtcatttactttgggaatgagcaaatccatttgggtaaagagcagaattc 5602944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 335 - 422
Target Start/End: Complemental strand, 35563447 - 35563364
Alignment:
Q  335 atgcactaacgcatgttaacatacgtaggggtattttggttatttactttgagaatgagcgaattcatttgggtaatgagcagaattc 422  Q
    |||||||| ||||||||||||| || ||||| ||||  || |||||||||| |||||||||||| ||||    |||||||||||||||    
T  35563447 atgcactagcgcatgttaacatgcgcaggggcatttcagtcatttactttgggaatgagcgaatccatt----taatgagcagaattc 35563364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 357 - 422
Target Start/End: Complemental strand, 3792361 - 3792296
Alignment:
Q  357 acgtaggggtattttggttatttactttgagaatgagcgaattcatttgggtaatgagcagaattc 422  Q
    ||||| |||||||||||  ||||| ||||||||||||   | ||||||||||||||||||||||||    
T  3792361 acgtaagggtattttggacatttattttgagaatgagtagaatcatttgggtaatgagcagaattc 3792296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 346 - 423
Target Start/End: Original strand, 45691050 - 45691127
Alignment:
Q  346 catgttaacatacgtaggggtattttggttatttactttgagaatgagcgaattcatttgggtaatgagcagaattcc 423  Q
    |||||||||||  ||||||| |||||||   ||||||||| |||||||||||  |||||| |||||||||| ||||||    
T  45691050 catgttaacatgtgtaggggcattttggacttttactttgggaatgagcgaaaccatttgagtaatgagcaaaattcc 45691127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 345 - 422
Target Start/End: Complemental strand, 50065555 - 50065478
Alignment:
Q  345 gcatgttaacatacgtaggggtattttggttatttactttgagaatgagcgaattcatttgggtaatgagcagaattc 422  Q
    |||||||||||| || || || |||| ||| |||||||||| |||||||||| | ||||| ||||||||| |||||||    
T  50065555 gcatgttaacatgcgcagaggcatttcggtcatttactttgggaatgagcgattccattttggtaatgagtagaattc 50065478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 335 - 395
Target Start/End: Complemental strand, 35563592 - 35563532
Alignment:
Q  335 atgcactaacgcatgttaacatacgtaggggtattttggttatttactttgagaatgagcg 395  Q
    |||||||| ||||||||||||| |||||||| ||||  || |||||||||| |||||||||    
T  35563592 atgcactagcgcatgttaacatgcgtaggggcatttcagtcatttactttgggaatgagcg 35563532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 347 - 423
Target Start/End: Original strand, 50069237 - 50069313
Alignment:
Q  347 atgttaacatacgtaggggtattttggttatttactttgagaatgagcgaattcatttgggtaatgagcagaattcc 423  Q
    |||||||||| || ||||| |||||||  |||||||||| ||||||||||     ||||||||||||||||||||||    
T  50069237 atgttaacatgcgcaggggcattttggacatttactttgggaatgagcgatgctgtttgggtaatgagcagaattcc 50069313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 347 - 422
Target Start/End: Complemental strand, 3792635 - 3792560
Alignment:
Q  347 atgttaacatacgtaggggtattttggttatttactttgagaatgagcgaattcatttgggtaatgagcagaattc 422  Q
    |||||||||| |||| ||| |||||||   |||||||||  ||||||||||   ||||||||||||||||||||||    
T  3792635 atgttaacatgcgtaagggcattttggacttttactttggaaatgagcgaaactatttgggtaatgagcagaattc 3792560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 350 - 423
Target Start/End: Original strand, 45691196 - 45691269
Alignment:
Q  350 ttaacatacgtaggggtattttggttatttactttgagaatgagcgaattcatttgggtaatgagcagaattcc 423  Q
    |||||||  ||||||| |||||||   ||||||||| |||||||||||  |||||| |||||||||| ||||||    
T  45691196 ttaacatgtgtaggggcattttggacttttactttgggaatgagcgaaaccatttgagtaatgagcaaaattcc 45691269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 350 - 423
Target Start/End: Original strand, 45691338 - 45691411
Alignment:
Q  350 ttaacatacgtaggggtattttggttatttactttgagaatgagcgaattcatttgggtaatgagcagaattcc 423  Q
    |||||||  ||||||| |||||||   ||||||||| |||||||||||  |||||| |||||||||| ||||||    
T  45691338 ttaacatgtgtaggggcattttggacttttactttgggaatgagcgaaaccatttgagtaatgagcaaaattcc 45691411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 6 - 422
Target Start/End: Original strand, 53814228 - 53814639
Alignment:
Q  6 atcaatgaatggttgtaccaaaattattattgaatgattgcatattcactaaacagtaacaaatggaacaaggcagcagcagctactgccactgccactg 105  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||  ||| ||| |||||||||| |||   |||||||||| ||||||    
T  53814228 atcaatgaatggttgtaccaaaattattattgaatggttgcatattcactaaacagggacagatgaaacaaggcagtagc---tactgccactaccactg 53814324  T
Q  106 tcacgtaagtctgctgcgcatataacatcagcaccaacgcgagttaactcacactagtgttaaaactagcgtgacttaactcagacgctagtaaaattct 205  Q
     || | || |||| |||||||||| |||||||||||||| ||||||||||||  |||||||||||||||||||||||||||||  ||||| | |||||||    
T  53814325 ccatgcaaatctgatgcgcatatagcatcagcaccaacgtgagttaactcacgttagtgttaaaactagcgtgacttaactca--cgctactcaaattct 53814422  T
Q  206 gttttggtgcttgctttgtacctgttttatgcctagcgtggtttaagtcactcaacgtgacttaagttgcgttacattttgtactaacgtgagttaagtc 305  Q
    |||||||| ||||||||||| | |||||    |||||||||||||||||||  |||||||||||||||||||| |||||||||| |  ||||||||||||    
T  53814423 gttttggtacttgctttgtatcagttttggtactagcgtggtttaagtcacgtaacgtgacttaagttgcgttccattttgtaccagtgtgagttaagtc 53814522  T
Q  306 acgcaacatatgttaagtcacgttgtaatatgcactaacgcatgttaacatacgtaggggtattttggttatttactttgagaatgagcgaattcatttg 405  Q
    ||| ||| |||||||||| ||||| |||| ||||||| ||||| ||||||| |||||||| |||||| | |||||||||| |||||||||||| ||||||    
T  53814523 acgtaacgtatgttaagttacgttttaatttgcactagcgcatattaacatgcgtaggggcattttgatcatttactttgggaatgagcgaatccatttg 53814622  T
Q  406 ggtaatgagcagaattc 422  Q
    |||||||||||||||||    
T  53814623 ggtaatgagcagaattc 53814639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 149 - 422
Target Start/End: Complemental strand, 44430689 - 44430418
Alignment:
Q  149 ttaactcacactagtgttaaaactagcgtgacttaactcagacgctagtaaaattctgttttggtgcttgctttgtacctgttttatgcctagcgtggtt 248  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||| | |   |  |||||||||| ||||||||||| | || |   ||||||||  |    
T  44430689 ttaactcacactagtgttaaaactagcgtgacttaactca--cgctactcattgtaggttttggtgcatgctttgtaccagattcaaaactagcgtgact 44430592  T
Q  249 taagtcactcaacgtgacttaagttgcgttacattttgtactaacgtgagttaagtcacgcaacatatgttaagtcacgttgtaatatgcactaacgcat 348  Q
    |||||||   ||||||||||||||||| || ||||||| |||| ||||| ||||||| ||| || | | ||||||||||||  ||| ||||||| |||||    
T  44430591 taagtcaagtaacgtgacttaagttgcatttcattttgcactagcgtgacttaagtcgcgctacctgtcttaagtcacgttccaatttgcactagcgcat 44430492  T
Q  349 gttaacatacgtaggggtattttggttatttactttgagaatgagcgaattcatttgggtaatgagcagaattc 422  Q
    |||||  | |||| |||||   || |  ||||||||| |||||||| ||  ||||||| |||||||||||||||    
T  44430491 gttaagttgcgtaagggtaaaatgatcttttactttgggaatgagcaaaaccatttggataatgagcagaattc 44430418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 215 - 306
Target Start/End: Original strand, 4970742 - 4970833
Alignment:
Q  215 cttgctttgtacctgttttatgcctagcgtggtttaagtcactcaacgtgacttaagttgcgttacattttgtactaacgtgagttaagtca 306  Q
    ||||||||||||| |||| ||||||||||||||||||||||| ||||||| ||||| |||| ||||||||||||||| ||||||||||||||    
T  4970742 cttgctttgtaccagtttcatgcctagcgtggtttaagtcacgcaacgtggcttaaattgctttacattttgtactagcgtgagttaagtca 4970833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 298 - 422
Target Start/End: Complemental strand, 15040805 - 15040681
Alignment:
Q  298 gttaagtcacgcaacatatgttaagtcacgttgtaatatgcactaacgcatgttaacatacgtaggggtattttggttatttactttgagaatgagcgaa 397  Q
    |||||||||||| |  ||| |||||  ||||| |||| |||||||  |||||||||||| |||||||| ||||  || |||||||||| |||||||||||    
T  15040805 gttaagtcacgctatttatcttaagctacgttataatttgcactagtgcatgttaacatgcgtaggggcatttcagtcatttactttgggaatgagcgaa 15040706  T
Q  398 ttcatttgggtaatgagcagaattc 422  Q
    | |||||||||||||||||||||||    
T  15040705 tccatttgggtaatgagcagaattc 15040681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 299 - 422
Target Start/End: Original strand, 19872096 - 19872219
Alignment:
Q  299 ttaagtcacgcaacatatgttaagtcacgttgtaatatgcactaacgcatgttaacatacgtaggggtattttggttatttactttgagaatgagcgaat 398  Q
    ||||||||||| || ||| |||||| ||||| || | ||||||||||||||||||||| ||||| || ||||| || ||||| |||  ||||||||||||    
T  19872096 ttaagtcacgctacttatcttaagttacgttatagtttgcactaacgcatgttaacatgcgtagaggcattttagtcatttattttaggaatgagcgaat 19872195  T
Q  399 tcatttgggtaatgagcagaattc 422  Q
    |||||| ||||||| |||||||||    
T  19872196 tcatttaggtaatgggcagaattc 19872219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 298 - 416
Target Start/End: Complemental strand, 7665857 - 7665739
Alignment:
Q  298 gttaagtcacgcaacatatgttaagtcacgttgtaatatgcactaacgcatgttaacatacgtaggggtattttggttatttactttgagaatgagcgaa 397  Q
    |||||||||||| || ||| |||||| ||||| |||| ||||||| ||||||||||||| | || ||| |||| ||| |||||||||| |||||||||||    
T  7665857 gttaagtcacgctacttatcttaagttacgttataatttgcactagcgcatgttaacatgcataagggcatttcggtcatttactttgcgaatgagcgaa 7665758  T
Q  398 ttcatttgggtaatgagca 416  Q
    | |||||||| ||||||||    
T  7665757 tccatttgggaaatgagca 7665739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 349 - 422
Target Start/End: Complemental strand, 50663948 - 50663875
Alignment:
Q  349 gttaacatacgtaggggtattttggttatttactttgagaatgagcgaattcatttgggtaatgagcagaattc 422  Q
    |||||||| |||||||| ||||||||||||||||||| ||||||||||| |||||||||| | |||||||||||    
T  50663948 gttaacatgcgtaggggcattttggttatttactttgggaatgagcgaaatcatttgggtgaagagcagaattc 50663875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 298 - 416
Target Start/End: Complemental strand, 34082963 - 34082845
Alignment:
Q  298 gttaagtcacgcaacatatgttaagtcacgttgtaatatgcactaacgcatgttaacatacgtaggggtattttggttatttactttgagaatgagcgaa 397  Q
    |||||||||||| || ||| |||||| | ||| |||| || || | ||||||||||||| |||||| | |||||| | ||||||||||  ||||||||||    
T  34082963 gttaagtcacgctacttatcttaagttatgttataatttgtaccagcgcatgttaacatgcgtaggagcattttgatcatttactttggaaatgagcgaa 34082864  T
Q  398 ttcatttgggtaatgagca 416  Q
    |||||||||| ||||||||    
T  34082863 ttcatttgggcaatgagca 34082845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 6 - 329
Target Start/End: Original strand, 13840390 - 13840709
Alignment:
Q  6 atcaatgaatggttgtaccaaaattattattgaatgattgcatattcactaaacagtaacaaatggaacaaggcagcagcagctactgccactgccactg 105  Q
    ||||||||||| ||||| |||||||||||| |||| ||||||| ||||||||||||  |   | ||||||| |  ||| |||||||||||||||||| ||    
T  13840390 atcaatgaatgattgtatcaaaattattatcgaataattgcatgttcactaaacagggaatgaaggaacaaag--gcaacagctactgccactgccattg 13840487  T
Q  106 tcacgtaagtctgctgcgcatataacatcagcaccaacgcgagttaactcacactagtgttaaaactagcgtgacttaactcagacgctagtaaaattct 205  Q
     ||     |||||| |||   ||| ||  |||| || || |||||||||| | ||||| |||||||||||||||||||||||  |||||  | |   |      
T  13840488 ccagtctggtctgcagcgtgcatagcagaagcatcagcgtgagttaactcccgctagtcttaaaactagcgtgacttaactc--acgctgctcattgtag 13840585  T
Q  206 gttttggtgcttgctttgtacctgttttatgcctagcgtggtttaagtcactcaacgtgacttaagttgcgttacattttgtactaacgtgagttaagtc 305  Q
    |||||||||| |||||| |||| | || |   ||||||||  ||||||||   ||||||| ||||||| |||| ||||||| |||| ||||| |||||||    
T  13840586 gttttggtgcatgctttataccagattcagaactagcgtgacttaagtcaagtaacgtgatttaagttacgtttcattttgcactagcgtgacttaagtc 13840685  T
Q  306 acgcaacatatgttaagtcacgtt 329  Q
    |||| || | | ||||||||||||    
T  13840686 acgctacctgtcttaagtcacgtt 13840709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 343 - 422
Target Start/End: Original strand, 6162681 - 6162760
Alignment:
Q  343 acgcatgttaacatacgtaggggtattttggttatttactttgagaatgagcgaattcatttgggtaatgagcagaattc 422  Q
    |||||||||||||| |||||||| |||||||   ||||||||| ||||||||| |  |||||||||||||||||||||||    
T  6162681 acgcatgttaacatgcgtaggggcattttggacttttactttgggaatgagcggaaccatttgggtaatgagcagaattc 6162760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 339 - 422
Target Start/End: Complemental strand, 42947458 - 42947375
Alignment:
Q  339 actaacgcatgttaacatacgtaggggtattttggttatttactttgagaatgagcgaattcatttgggtaatgagcagaattc 422  Q
    |||| ||||||||||||| |||||| | |||||||   ||||||||||||||||| ||| |||||| |||||||||||||||||    
T  42947458 actagcgcatgttaacatgcgtaggagcattttggacttttactttgagaatgagtgaaatcatttaggtaatgagcagaattc 42947375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 6 - 61
Target Start/End: Complemental strand, 39685599 - 39685544
Alignment:
Q  6 atcaatgaatggttgtaccaaaattattattgaatgattgcatattcactaaacag 61  Q
    |||||||||||||||||| ||||||||||| |||| ||||||| ||||||||||||    
T  39685599 atcaatgaatggttgtacaaaaattattatcgaataattgcatgttcactaaacag 39685544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 343 - 422
Target Start/End: Original strand, 53827660 - 53827739
Alignment:
Q  343 acgcatgttaacatacgtaggggtattttggttatttactttgagaatgagcgaattcatttgggtaatgagcagaattc 422  Q
    |||||||||||||| |||||||| |||||||  |||||||||| ||||||||||    |||| |||||||||||||||||    
T  53827660 acgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagcagaattc 53827739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 147 - 308
Target Start/End: Complemental strand, 39685466 - 39685307
Alignment:
Q  147 agttaactcacactagtgttaaaactagcgtgacttaactcagacgctagtaaaattctgttttggtgcttgctttgtacctgttttatgcctagcgtgg 246  Q
    ||||||||||| |||||||||||||||||||||||||||||  |||||  | |   |  |||||||||| |||||| |||| | || |   ||||||||     
T  39685466 agttaactcaccctagtgttaaaactagcgtgacttaactc--acgctgttcattgtaggttttggtgcatgctttctaccagattcagaactagcgtga 39685369  T
Q  247 tttaagtcactcaacgtgacttaagttgcgttacattttgtactaacgtgagttaagtcacg 308  Q
     ||||||||   ||||||||||||||| |||| ||||||| || | ||||| ||||||||||    
T  39685368 cttaagtcaagtaacgtgacttaagtttcgtttcattttgcaccagcgtgacttaagtcacg 39685307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 349 - 422
Target Start/End: Original strand, 54528961 - 54529034
Alignment:
Q  349 gttaacatacgtaggggtattttggttatttactttgagaatgagcgaattcatttgggtaatgagcagaattc 422  Q
    ||||||||  |||||||||||||||  |||||| |||||||||||| || |||||| ||||| |||||||||||    
T  54528961 gttaacatgtgtaggggtattttggacatttacattgagaatgagcaaaatcattttggtaaagagcagaattc 54529034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 3860659 - 3860615
Alignment:
Q  14 atggttgtaccaaaattattattgaatgattgcatattcactaaa 58  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||    
T  3860659 atggttgtaccaaaattattattgaataattgcatgttcactaaa 3860615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 306 - 361
Target Start/End: Original strand, 35069249 - 35069304
Alignment:
Q  306 acgcaacatatgttaagtcacgttgtaatatgcactaacgcatgttaacatacgta 361  Q
    ||||||| ||| |||||| |||||||||| ||||||| ||||||||||||||||||    
T  35069249 acgcaacgtatcttaagttacgttgtaatttgcactagcgcatgttaacatacgta 35069304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 344 - 422
Target Start/End: Complemental strand, 4969953 - 4969875
Alignment:
Q  344 cgcatgttaacatacgtaggggtattttggttatttactttgagaatgagcgaattcatttgggtaatgagcagaattc 422  Q
    |||| ||||||  ||||||||||||||| |   ||||||||| ||||||||| |  |||||||||||||||||||||||    
T  4969953 cgcaagttaactcacgtaggggtattttcgacttttactttgggaatgagcggaaccatttgggtaatgagcagaattc 4969875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 184
Target Start/End: Original strand, 21566861 - 21566907
Alignment:
Q  138 accaacgcgagttaactcacactagtgttaaaactagcgtgacttaa 184  Q
    ||||||| |||||||||||| |||||||||| |||||||||||||||    
T  21566861 accaacgtgagttaactcacgctagtgttaacactagcgtgacttaa 21566907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 377 - 421
Target Start/End: Original strand, 13843626 - 13843670
Alignment:
Q  377 tttactttgagaatgagcgaattcatttgggtaatgagcagaatt 421  Q
    ||||||||| |||||||||||  ||||||||||||||||||||||    
T  13843626 tttactttgggaatgagcgaaaccatttgggtaatgagcagaatt 13843670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 343 - 423
Target Start/End: Original strand, 15042005 - 15042085
Alignment:
Q  343 acgcatgttaacatacgtaggggtattttggttatttactttgagaatgagcgaattcatttgggtaatgagcagaattcc 423  Q
    ||||| |||||||| |||||||| ||||| |   ||||||||| ||||||||||  |  ||||||||||||||||||||||    
T  15042005 acgcaagttaacatgcgtaggggcattttcgacttttactttgggaatgagcgatattgtttgggtaatgagcagaattcc 15042085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 318 - 422
Target Start/End: Complemental strand, 39645878 - 39645774
Alignment:
Q  318 ttaagtcacgttgtaatatgcactaacgcatgttaacatacgtaggggtattttggttatttactttgagaatgagcgaattcatttgggtaatgagcag 417  Q
    |||||| || || |||| ||||||| ||||||||||||| ||||||   |||| | | |||||||||| |||||| ||||| ||||| | |||||||| |    
T  39645878 ttaagttacattataatttgcactagcgcatgttaacatgcgtaggaacatttcgatcatttactttgcgaatgaacgaatccatttagataatgagcgg 39645779  T
Q  418 aattc 422  Q
    |||||    
T  39645778 aattc 39645774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 318 - 422
Target Start/End: Complemental strand, 39685316 - 39685212
Alignment:
Q  318 ttaagtcacgttgtaatatgcactaacgcatgttaacatacgtaggggtattttggttatttactttgagaatgagcgaattcatttgggtaatgagcag 417  Q
    ||||||||||||  ||| ||||||| ||| ||||||  | |||| |||||   ||||  |||||||||| ||||||||||  |||||||||||||||||     
T  39685316 ttaagtcacgttccaatttgcactagcgcgtgttaagttgcgtaagggtaaaatggtcttttactttgaaaatgagcgaaaccatttgggtaatgagcaa 39685217  T
Q  418 aattc 422  Q
    |||||    
T  39685216 aattc 39685212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 358 - 422
Target Start/End: Original strand, 40517537 - 40517601
Alignment:
Q  358 cgtaggggtattttggttatttactttgagaatgagcgaattcatttgggtaatgagcagaattc 422  Q
    ||||||||||| ||||| |||||||||  |||||||||||  | ||||||||| |||||||||||    
T  40517537 cgtaggggtatcttggtcatttactttaggaatgagcgaaaccgtttgggtaaagagcagaattc 40517601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 49
Target Start/End: Original strand, 21566700 - 21566743
Alignment:
Q  6 atcaatgaatggttgtaccaaaattattattgaatgattgcata 49  Q
    |||||||||||||||||||  |||||||||||||||| ||||||    
T  21566700 atcaatgaatggttgtacctgaattattattgaatgaatgcata 21566743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 343 - 422
Target Start/End: Complemental strand, 42381694 - 42381615
Alignment:
Q  343 acgcatgttaacatacgtaggggtattttggttatttactttgagaatgagcgaattcatttgggtaatgagcagaattc 422  Q
    |||||||||||||| |||| ||| |||||||  ||||||||||  |||||||||  |  ||| |||||||||||||||||    
T  42381694 acgcatgttaacatgcgtaagggcattttggacatttactttggaaatgagcgatgttgtttaggtaatgagcagaattc 42381615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 349 - 423
Target Start/End: Complemental strand, 8150242 - 8150168
Alignment:
Q  349 gttaacatacgtaggggtattttggttatttactttgagaatgagcgaattcatttgggtaatgagcagaattcc 423  Q
    |||||||||||||||||||||||||| | || ||||| |||||||| ||  | ||||||||| || || ||||||    
T  8150242 gttaacatacgtaggggtattttggtcagtttctttgggaatgagcaaaaacgtttgggtaaagatcataattcc 8150168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 338 - 396
Target Start/End: Complemental strand, 42993650 - 42993592
Alignment:
Q  338 cactaacgcatgttaacatacgtaggggtattttggttatttactttgagaatgagcga 396  Q
    ||||| |||||||||||||||| ||||| |||| ||  |||||||||| ||||||||||    
T  42993650 cactagcgcatgttaacatacgcaggggcatttaggaaatttactttgggaatgagcga 42993592  T

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Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 349 - 394
Target Start/End: Original strand, 30533883 - 30533928
Alignment:
Q  349 gttaacatacgtaggggtattttggttatttactttgagaatgagc 394  Q
    ||||||||  ||||||||||||||| |||||||||||| |||||||    
T  30533883 gttaacatgtgtaggggtattttggatatttactttgaaaatgagc 30533928  T

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Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 349 - 422
Target Start/End: Complemental strand, 47064937 - 47064864
Alignment:
Q  349 gttaacatacgtaggggtattttggttatttactttgagaatgagcgaattcatttgggtaatgagcagaattc 422  Q
    |||||||| |||||| | |||||||   ||||||||| ||||||||  | |||||||||||||||||| |||||    
T  47064937 gttaacatgcgtaggagcattttggacttttactttgggaatgagcagaatcatttgggtaatgagcataattc 47064864  T

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Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 6 - 416
Target Start/End: Original strand, 6705715 - 6706107
Alignment:
Q  6 atcaatgaatggttgtaccaaaattattattgaatgattgcatattcactaaacagtaacaaatggaacaaggcagcagcagctactgccactgccactg 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||   |||||||||||||||||    
T  6705715 atcaatgaatggttgtaccaaaattattattgaatgattgcatattcactaaacagggacagatggaacaaggcagcagc---tactgccactgccactg 6705811  T
Q  106 tcacgtaagtctgctgcgcatataacatcagcaccaacgcgagttaactcacactagtgttaaaactagcgtgacttaactcagacgctagtaaaattct 205  Q
     || |  | |||| |||||||||| | ||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||  ||||| | |||||||    
T  6705812 ccatgctattctgttgcgcatatagcttcaacaccaacgtgagttaactcacgctagtgttaaaactagcgtgacttaactca--cgctactcaaattct 6705909  T
Q  206 gttttggtgcttgctttgtacctgttttatgcctagcgtggtttaagtcactcaacgtgacttaagttgcgttacattttgtactaacgtgagttaagtc 305  Q
    |||                ||  |||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||| |||||||||||||    
T  6705910 gttaaa-------------actagttttatgcctagcgtggtttaagtcacacaacgtggcttaagttgcgtaacattttgtactagcgtgagttaagtc 6705996  T
Q  306 acgcaacatatgttaagtcacgttgtaatatgcactaacgcatgttaacatacgtaggggtattttggttatttactttgagaatgagcgaattcatttg 405  Q
    |||||||||||||||||  |||||||||| ||||||| ||||||||||||| |||||||| ||||  || ||||||||||  ||||||||||| ||||||    
T  6705997 acgcaacatatgttaagatacgttgtaatttgcactagcgcatgttaacatgcgtaggggcatttcagtcatttactttggaaatgagcgaatccatttg 6706096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 298 - 423
Target Start/End: Complemental strand, 759284 - 759159
Alignment:
Q  298 gttaagtcacgcaacatatgttaagtcacgttgtaatatgcactaacgcatgttaacatacgtaggggtattttggttatttactttgagaatgagcgaa 397  Q
    |||||||||| |||||||| |||||| |||||||||| | ||||||| ||||||||||| |||| | | |||| ||| |||||||||| |||||| ||||    
T  759284 gttaagtcacacaacatatcttaagttacgttgtaatttacactaacacatgttaacatgcgtatgagcatttcggtcatttactttgggaatgatcgaa 759185  T
Q  398 ttcatttgggtaatgagcagaattcc 423  Q
    | ||||| ||||||||||||||||||    
T  759184 tccatttaggtaatgagcagaattcc 759159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 298 - 422
Target Start/End: Complemental strand, 28678010 - 28677886
Alignment:
Q  298 gttaagtcacgcaacatatgttaagtcacgttgtaatatgcactaacgcatgttaacatacgtaggggtattttggttatttactttgagaatgagcgaa 397  Q
    |||||||||||| || ||| |||||| ||||| |||| | || || ||||||||||| ||||||||||||||| ||| |||||||||  ||||||||||     
T  28678010 gttaagtcacgctacttattttaagttacgttataattttcagtagcgcatgttaacttacgtaggggtatttcggtcatttactttaggaatgagcgat 28677911  T
Q  398 ttcatttgggtaatgagcagaattc 422  Q
    | ||||||| |||||||||||||||    
T  28677910 tccatttggataatgagcagaattc 28677886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 298 - 422
Target Start/End: Complemental strand, 11135865 - 11135741
Alignment:
Q  298 gttaagtcacgcaacatatgttaagtcacgttgtaatatgcactaacgcatgttaacatacgtaggggtattttggttatttactttgagaatgagcgaa 397  Q
    ||||| ||||||||| | |||||| | ||||||| || ||||||| || | |||||||| ||||||||||||||||| ||||| ||||  ||||||||||    
T  11135865 gttaactcacgcaacgtgtgttaacttacgttgtcatttgcactagcgtaagttaacatgcgtaggggtattttggtcatttattttggaaatgagcgaa 11135766  T
Q  398 ttcatttgggtaatgagcagaattc 422  Q
     |||||||||||| ||||| |||||    
T  11135765 atcatttgggtaaagagcataattc 11135741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 306 - 423
Target Start/End: Complemental strand, 34016118 - 34016001
Alignment:
Q  306 acgcaacatatgttaagtcacgttgtaatatgcactaacgcatgttaacatacgtaggggtattttggttatttactttgagaatgagcgaattcatttg 405  Q
    ||||||| ||| |||||| ||||||||||   |||||  ||||||||||||  ||||||| ||||  || |||||||||| |||||||||||| |||||     
T  34016118 acgcaacgtatcttaagttacgttgtaattcccactagtgcatgttaacatgtgtaggggcatttcagtcatttactttgggaatgagcgaatccattta 34016019  T
Q  406 ggtaatgagcagaattcc 423  Q
    ||||||||||||||||||    
T  34016018 ggtaatgagcagaattcc 34016001  T

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Target: chr5; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 350 - 422
Target Start/End: Original strand, 17644606 - 17644678
Alignment:
Q  350 ttaacatacgtaggggtattttggttatttactttgagaatgagcgaattcatttgggtaatgagcagaattc 422  Q
    ||||||| ||||||||||||||||  |||||||||| |||||||||||| ||||| ||||||||||| |||||    
T  17644606 ttaacatgcgtaggggtattttggacatttactttgggaatgagcgaatccatttcggtaatgagcacaattc 17644678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 343 - 418
Target Start/End: Original strand, 30491794 - 30491869
Alignment:
Q  343 acgcatgttaacatacgtaggggtattttggttatttactttgagaatgagcgaattcatttgggtaatgagcaga 418  Q
    ||||| |||||||| |||||||  ||||| |   ||||||||| ||||||||||||||||||||||||||||||||    
T  30491794 acgcaagttaacatgcgtagggacattttcgacttttactttgggaatgagcgaattcatttgggtaatgagcaga 30491869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 344 - 422
Target Start/End: Original strand, 34017619 - 34017697
Alignment:
Q  344 cgcatgttaacatacgtaggggtattttggttatttactttgagaatgagcgaattcatttgggtaatgagcagaattc 422  Q
    |||||||| || | ||||||||||||| ||| ||||||||||| |||||||| |  |||||| ||||||||||||||||    
T  34017619 cgcatgtttacttgcgtaggggtatttcggtcatttactttgaaaatgagcggaaccatttgagtaatgagcagaattc 34017697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 349 - 422
Target Start/End: Original strand, 6158948 - 6159020
Alignment:
Q  349 gttaacatacgtaggggtattttggttatttactttgagaatgagcgaattcatttgggtaatgagcagaattc 422  Q
    |||||||||||||||| |||||| |  |||||||||| |||||||||||| |||||  ||||||||||||||||    
T  6158948 gttaacatacgtaggg-tattttagacatttactttgggaatgagcgaatccatttaagtaatgagcagaattc 6159020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 339 - 414
Target Start/End: Original strand, 19401994 - 19402069
Alignment:
Q  339 actaacgcatgttaacatacgtaggggtattttggttatttactttgagaatgagcgaattcatttgggtaatgag 414  Q
    |||| ||||||||||||| |||| ||| |||||||   ||||||||||||||||| |||  |||||||||||||||    
T  19401994 actagcgcatgttaacatgcgtatgggcattttggacttttactttgagaatgagtgaaaccatttgggtaatgag 19402069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 298 - 392
Target Start/End: Complemental strand, 30489847 - 30489753
Alignment:
Q  298 gttaagtcacgcaacatatgttaagtcacgttgtaatatgcactaacgcatgttaacatacgtaggggtattttggttatttactttgagaatga 392  Q
    |||||||||||| || ||| |||||| ||||| |||| |||||||  |||||||||||| |||||||| ||||| |   ||||||||| ||||||    
T  30489847 gttaagtcacgctacttattttaagttacgttataatctgcactagagcatgttaacatgcgtaggggcattttcgacttttactttgggaatga 30489753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 298 - 419
Target Start/End: Original strand, 5506645 - 5506766
Alignment:
Q  298 gttaagtcacgcaacatatgttaagtcacgttgtaatatgcactaacgcatgttaacatacgtaggggtattttggttatttactttgagaatgagcgaa 397  Q
    |||||||||||| || ||| |||||| | ||| |||| ||||||  ||||||| ||||| |||||| | |||| | | |||||||||| ||||||| |||    
T  5506645 gttaagtcacgctacttatcttaagttatgttataatttgcactggcgcatgtcaacatgcgtaggagcatttcgatcatttactttgggaatgagtgaa 5506744  T
Q  398 ttcatttgggtaatgagcagaa 419  Q
    | || |||  ||||||||||||    
T  5506745 tccagttgaataatgagcagaa 5506766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 349 - 422
Target Start/End: Complemental strand, 17636417 - 17636344
Alignment:
Q  349 gttaacatacgtaggggtattttggttatttactttgagaatgagcgaattcatttgggtaatgagcagaattc 422  Q
    ||||||||  ||||||||||||   | ||||| |||| |||||||||||| ||||| |||||||||||||||||    
T  17636417 gttaacatgtgtaggggtatttcaatcatttattttgggaatgagcgaatccatttaggtaatgagcagaattc 17636344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 343 - 422
Target Start/End: Complemental strand, 6702449 - 6702370
Alignment:
Q  343 acgcatgttaacatacgtaggggtattttggttatttactttgagaatgagcgaattcatttgggtaatgagcagaattc 422  Q
    ||||| |||||||| |||| ||| ||||| |   |||||||||||||||||||||   ||||||| ||||||||||||||    
T  6702449 acgcaagttaacatgcgtatgggcatttttgacttttactttgagaatgagcgaaactatttgggcaatgagcagaattc 6702370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 343 - 422
Target Start/End: Original strand, 33144183 - 33144262
Alignment:
Q  343 acgcatgttaacatacgtaggggtattttggttatttactttgagaatgagcgaattcatttgggtaatgagcagaattc 422  Q
    ||||| |||||||| |||||||| |||| ||| |||||||||  ||||||||||  |  |||||||||||| ||||||||    
T  33144183 acgcaagttaacatgcgtaggggcatttcggtcatttactttaggaatgagcgatattgtttgggtaatgaacagaattc 33144262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 343 - 422
Target Start/End: Complemental strand, 40008791 - 40008712
Alignment:
Q  343 acgcatgttaacatacgtaggggtattttggttatttactttgagaatgagcgaattcatttgggtaatgagcagaattc 422  Q
    |||||||||||||| || ||||| ||||| |  |||||||||||||||||||||     ||| |||||||||||||||||    
T  40008791 acgcatgttaacatgcgcaggggcattttagacatttactttgagaatgagcgataatgtttaggtaatgagcagaattc 40008712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 349 - 422
Target Start/End: Complemental strand, 1145214 - 1145141
Alignment:
Q  349 gttaacatacgtaggggtattttggttatttactttgagaatgagcgaattcatttgggtaatgagcagaattc 422  Q
    |||||||| ||||| || |||||||| |||||||||| |||||||||||    ||||| ||||||||| |||||    
T  1145214 gttaacatgcgtagaggcattttggtcatttactttgggaatgagcgaaactgtttggataatgagcataattc 1145141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 361 - 422
Target Start/End: Original strand, 6636919 - 6636980
Alignment:
Q  361 aggggtattttggttatttactttgagaatgagcgaattcatttgggtaatgagcagaattc 422  Q
    |||| ||||||||| ||||| |||| |||||| |  |||||||||| |||||||||||||||    
T  6636919 agggatattttggtcatttattttgggaatgaacatattcatttggataatgagcagaattc 6636980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 349 - 422
Target Start/End: Original strand, 7164754 - 7164827
Alignment:
Q  349 gttaacatacgtaggggtattttggttatttactttgagaatgagcgaattcatttgggtaatgagcagaattc 422  Q
    ||||| || ||||||| ||||||  | ||||| ||||||||||||||||| |||||| |||| ||| |||||||    
T  7164754 gttaatatgcgtagggatattttaatcatttattttgagaatgagcgaatccatttgagtaaagagtagaattc 7164827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 349 - 394
Target Start/End: Original strand, 7826133 - 7826178
Alignment:
Q  349 gttaacatacgtaggggtattttggttatttactttgagaatgagc 394  Q
    |||||||||||||||||||||||||| | || ||||| ||||||||    
T  7826133 gttaacatacgtaggggtattttggtaaatttctttgggaatgagc 7826178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 188
Target Start/End: Original strand, 39224138 - 39224183
Alignment:
Q  143 cgcgagttaactcacactagtgttaaaactagcgtgacttaactca 188  Q
    ||||||||||||||||||||||||||| || |||||  ||||||||    
T  39224138 cgcgagttaactcacactagtgttaaaccttgcgtgtgttaactca 39224183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 123 - 422
Target Start/End: Original strand, 17436322 - 17436619
Alignment:
Q  123 gcatataacatcagcaccaacgcgagttaactcacactagtgttaaaactagcgtgacttaactcagacgctagtaaaattctgttttggtgcttgcttt 222  Q
    ||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||  ||||| | ||||| |||||| || ||||||||    
T  17436322 gcatatagcatcagcaccaacgtgagttaactcacgctagtgttaaaactagcgtgacttaactca--cgctactcaaattttgttttcgtacttgcttt 17436419  T
Q  223 gtacctgttttatgcctagcgtggtttaagtcactcaacgtgacttaagttgcgttacattttgtactaacgtgagttaagtcacgcaacatatgttaag 322  Q
    ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  || |||||    
T  17436420 gtaccagttttatgcctagcatggtttaagtcactcaacgtgacttaagttgcgttacattttgtactagcgtgagttaagtcacgcaacgcatcttaag 17436519  T
Q  323 tcacgttgtaatatgcactaacgcatgttaacatacgtaggggtattttggttatttactttgagaatgagcgaattcatttgggtaatgagcagaattc 422  Q
    | |||||||||| ||||||| |||||||||||||  ||||||  |||| ||| |||||||||| ||| |||||||| |||||||||||||||||||||||    
T  17436520 ttacgttgtaatttgcactagcgcatgttaacatgtgtagggacatttcggtcatttactttgggaacgagcgaatccatttgggtaatgagcagaattc 17436619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 338 - 422
Target Start/End: Complemental strand, 14153438 - 14153354
Alignment:
Q  338 cactaacgcatgttaacatacgtaggggtattttggttatttactttgagaatgagcgaattcatttgggtaatgagcagaattc 422  Q
    ||||| ||||||||||||| ||||||||||||||||| |||||||||| |||||||| || ||||||||||||||||||||||||    
T  14153438 cactagcgcatgttaacatgcgtaggggtattttggtcatttactttgggaatgagcaaaatcatttgggtaatgagcagaattc 14153354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 6 - 188
Target Start/End: Original strand, 25403673 - 25403853
Alignment:
Q  6 atcaatgaatggttgtaccaaaattattattgaatgattgcatattcactaaac-agtaacaaatggaacaaggcagcagcagctactgccactgccact 104  Q
    ||||||||||||||||||||||||||||||||||| ||||||| |||||||||| || ||  || ||||||| |  |||||||||||||||||||||| |    
T  25403673 atcaatgaatggttgtaccaaaattattattgaataattgcatgttcactaaacaaggaatgaa-ggaacaaag--gcagcagctactgccactgccaat 25403769  T
Q  105 gtcacgtaagtctgctgcgcatataacatcagcaccaacgcgagttaactcacactagtgttaaaactagcgtgacttaactca 188  Q
    | ||     |||||| |||   |||  |  ||||||| || |||||||||||| ||||||||||||||||||||||||||||||    
T  25403770 gccagtctggtctgcagcgtgcatagtagaagcaccagcgtgagttaactcacgctagtgttaaaactagcgtgacttaactca 25403853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 308 - 422
Target Start/End: Complemental strand, 32274298 - 32274184
Alignment:
Q  308 gcaacatatgttaagtcacgttgtaatatgcactaacgcatgttaacatacgtaggggtattttggttatttactttgagaatgagcgaattcatttggg 407  Q
    ||||||||| |||||| | ||| |||| ||||||| ||||||||||||| |||||||| |||| | | |||||||||| |||||||||||| ||||||||    
T  32274298 gcaacatatcttaagttatgttctaatttgcactagcgcatgttaacatgcgtaggggcatttcgatcatttactttgggaatgagcgaatccatttggg 32274199  T
Q  408 taatgagcagaattc 422  Q
     |||||||| |||||    
T  32274198 caatgagcataattc 32274184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 343 - 422
Target Start/End: Original strand, 35060894 - 35060973
Alignment:
Q  343 acgcatgttaacatacgtaggggtattttggttatttactttgagaatgagcgaattcatttgggtaatgagcagaattc 422  Q
    |||||||||||||| |||||||| |||||||  ||||||||||  |||||||| | ||||||||||||||||||||||||    
T  35060894 acgcatgttaacatgcgtaggggcattttggacatttactttggaaatgagcggaatcatttgggtaatgagcagaattc 35060973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 313 - 384
Target Start/End: Complemental strand, 31483752 - 31483681
Alignment:
Q  313 atatgttaagtcacgttgtaatatgcactaacgcatgttaacatacgtaggggtattttggttatttacttt 384  Q
    |||| |||||| |||||||||| ||||||| ||||||||||||| |||||||| |||||| |||||||||||    
T  31483752 atatcttaagttacgttgtaatttgcactagcgcatgttaacatgcgtaggggcattttgattatttacttt 31483681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 341 - 422
Target Start/End: Original strand, 31522532 - 31522613
Alignment:
Q  341 taacgcatgttaacatacgtaggggtattttggttatttactttgagaatgagcgaattcatttgggtaatgagcagaattc 422  Q
    ||||||| |||||| | |||||||| |||| ||| |||||||||| ||||||||| |  |||||||||||||||||||||||    
T  31522532 taacgcaagttaacttgcgtaggggcatttcggtcatttactttgggaatgagcggaaccatttgggtaatgagcagaattc 31522613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 17436286 - 17436327
Alignment:
Q  9 aatgaatggttgtaccaaaattattattgaatgattgcatat 50  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  17436286 aatgaatggttgtaccaaaattattattgaataattgcatat 17436327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 282 - 423
Target Start/End: Complemental strand, 24327084 - 24326943
Alignment:
Q  282 ttttgtactaacgtgagttaagtcacgcaacatatgttaagtcacgttgtaatatgcactaacgcatgttaacatacgtaggggtattttggttatttac 381  Q
    |||||||||| ||||||||||||||| | |  | | ||||||||||| | | | |||||||||||| |||||   | ||| |||||     || |||||     
T  24327084 ttttgtactagcgtgagttaagtcacactatttgtcttaagtcacgtagcattttgcactaacgcaagttaagtcaagtaagggtaaaaatgtcatttat 24326985  T
Q  382 tttgagaatgagcgaattcatttgggtaatgagcagaattcc 423  Q
    |||| ||||||||||||||||||| |||||||||||||||||    
T  24326984 tttgggaatgagcgaattcatttgagtaatgagcagaattcc 24326943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 341 - 421
Target Start/End: Original strand, 4321735 - 4321815
Alignment:
Q  341 taacgcatgttaacatacgtaggggtattttggttatttactttgagaatgagcgaattcatttgggtaatgagcagaatt 421  Q
    |||||||||||||| | ||||| || |||||| | ||||||||||| ||||||||||   |||| ||||||||||||||||    
T  4321735 taacgcatgttaacttgcgtagaggcattttgatcatttactttgaaaatgagcgaaactatttaggtaatgagcagaatt 4321815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 349 - 422
Target Start/End: Complemental strand, 806618 - 806545
Alignment:
Q  349 gttaacatacgtaggggtattttggttatttactttgagaatgagcgaattcatttgggtaatgagcagaattc 422  Q
    ||||||||||||||| ||||||| |  ||||||||||||||||||| ||    ||||||||| |||||||||||    
T  806618 gttaacatacgtaggagtattttagacatttactttgagaatgagcaaaactgtttgggtaaagagcagaattc 806545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 238 - 306
Target Start/End: Original strand, 25403901 - 25403969
Alignment:
Q  238 ctagcgtggtttaagtcactcaacgtgacttaagttgcgttacattttgtactaacgtgagttaagtca 306  Q
    ||||||||  ||||||||  |||||||||||||||||||||  |||||| |||| ||||| ||||||||    
T  25403901 ctagcgtgacttaagtcaagcaacgtgacttaagttgcgtttaattttgaactagcgtgacttaagtca 25403969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 146 - 188
Target Start/End: Complemental strand, 24359185 - 24359144
Alignment:
Q  146 gagttaactcacactagtgttaaaactagcgtgacttaactca 188  Q
    |||||||||||||||||||||||| || |||||||||||||||    
T  24359185 gagttaactcacactagtgttaaatct-gcgtgacttaactca 24359144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 349 - 406
Target Start/End: Original strand, 7203956 - 7204013
Alignment:
Q  349 gttaacatacgtaggggtattttggttatttactttgagaatgagcgaattcatttgg 406  Q
    |||||||| ||||||||||||||| | |||||||||| ||| |||| || ||||||||    
T  7203956 gttaacatgcgtaggggtattttgatcatttactttgggaacgagcaaaatcatttgg 7204013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 4e-34; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 309 - 423
Target Start/End: Complemental strand, 8273358 - 8273244
Alignment:
Q  309 caacatatgttaagtcacgttgtaatatgcactaacgcatgttaacatacgtaggggtattttggttatttactttgagaatgagcgaattcatttgggt 408  Q
    |||||||| |||||| |||||||||| ||||| ||||||||||||||| |||||||| |||| ||| |||||||||| |||||||||||| |||||||||    
T  8273358 caacatatcttaagttacgttgtaatttgcacaaacgcatgttaacatgcgtaggggcatttcggtcatttactttgggaatgagcgaatccatttgggt 8273259  T
Q  409 aatgagcagaattcc 423  Q
    |||||||||||||||    
T  8273258 aatgagcagaattcc 8273244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 6 - 188
Target Start/End: Original strand, 942910 - 943090
Alignment:
Q  6 atcaatgaatggttgtaccaaaattattattgaatgattgcatattcactaaac-agtaacaaatggaacaaggcagcagcagctactgccactgccact 104  Q
    ||||||||||| || |||||||||||||||||||| ||||||| |||||||||| || ||  || ||||||| |  ||||||||||||||||||||||||    
T  942910 atcaatgaatgattttaccaaaattattattgaataattgcatgttcactaaacaaggaatgaa-ggaacaaag--gcagcagctactgccactgccact 943006  T
Q  105 gtcacgtaagtctgctgcgcatataacatcagcaccaacgcgagttaactcacactagtgttaaaactagcgtgacttaactca 188  Q
      ||     |||| | |||   ||| ||  ||||||| |  |||||||||||| || |||||||||||||||||||||||||||    
T  943007 accagtctggtctacagcgtgcatagcagaagcaccagcttgagttaactcacgctcgtgttaaaactagcgtgacttaactca 943090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 344 - 422
Target Start/End: Complemental strand, 12967349 - 12967270
Alignment:
Q  344 cgcatgttaacatacgtaggggtattttggt-tatttactttgagaatgagcgaattcatttgggtaatgagcagaattc 422  Q
    ||||||||||||| ||||||||||||||||  | ||||||||||||||||||| |  ||||| |||||||||||||||||    
T  12967349 cgcatgttaacatgcgtaggggtattttggactttttactttgagaatgagcggaaccatttaggtaatgagcagaattc 12967270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 357 - 423
Target Start/End: Original strand, 22787998 - 22788064
Alignment:
Q  357 acgtaggggtattttggttatttactttgagaatgagcgaattcatttgggtaatgagcagaattcc 423  Q
    |||||||||||||||||| |||||||||| |||||| | ||| ||||||||||| ||||||||||||    
T  22787998 acgtaggggtattttggtcatttactttgggaatgaacaaatccatttgggtaaagagcagaattcc 22788064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 135 - 188
Target Start/End: Original strand, 24929087 - 24929140
Alignment:
Q  135 agcaccaacgcgagttaactcacactagtgttaaaactagcgtgacttaactca 188  Q
    ||||||| || |||||||||||| ||||||||||||||||||||||||||||||    
T  24929087 agcaccagcgtgagttaactcacgctagtgttaaaactagcgtgacttaactca 24929140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 339 - 419
Target Start/End: Complemental strand, 11713041 - 11712961
Alignment:
Q  339 actaacgcatgttaacatacgtaggggtattttggttatttactttgagaatgagcgaattcatttgggtaatgagcagaa 419  Q
    |||| |||||||||||||||||||||| |||||||   ||||||||| |||||||||||  ||| | ||||||||||||||    
T  11713041 actagcgcatgttaacatacgtaggggcattttggacttttactttgggaatgagcgaaaccatctaggtaatgagcagaa 11712961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 336 - 422
Target Start/End: Complemental strand, 22727748 - 22727662
Alignment:
Q  336 tgcactaacgcatgttaacatacgtaggggtattttggttatttactttgagaatgagcgaattcatttgggtaatgagcagaattc 422  Q
    ||||||| |||||||||||  |||||||||||||| ||| |||||||||| |||| ||| |||  |||||||||| |||||| ||||    
T  22727748 tgcactagcgcatgttaactcacgtaggggtatttgggtcatttactttgggaataagcaaatctatttgggtaaagagcaggattc 22727662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 238 - 418
Target Start/End: Original strand, 25678782 - 25678962
Alignment:
Q  238 ctagcgtggtttaagtcactcaacgtgacttaagttgcgttacattttgtactaacgtgagttaagtcacgcaacatatgttaagtcacgttgtaatatg 337  Q
    ||||||||  ||||||||   ||||| |||||||||| ||| ||| ||| |||| ||||| ||||||||||| |||| | ||||||||||||  ||| ||    
T  25678782 ctagcgtgacttaagtcaagtaacgtaacttaagttgtgtttcatattgcactagcgtgacttaagtcacgctacatgtcttaagtcacgttccaatttg 25678881  T
Q  338 cactaacgcatgttaacatacgtaggggtattttggttatttactttgagaatgagcgaattcatttgggtaatgagcaga 418  Q
    ||| | ||||||||||  |  ||| |||||    |||  ||||||||| |||| ||||||  ||||| |||||||||||||    
T  25678882 cacaagcgcatgttaagttgtgtaagggtaaaaaggtcttttactttgggaatcagcgaaaccattttggtaatgagcaga 25678962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 238 - 329
Target Start/End: Original strand, 943138 - 943229
Alignment:
Q  238 ctagcgtggtttaagtcactcaacgtgacttaagttgcgttacattttgtactaacgtgagttaagtcacgcaacatatgttaagtcacgtt 329  Q
    ||||||||  ||||||||   |||||||||||||||||||| ||| ||| |||| ||||| ||||||||||| || | | ||||||||||||    
T  943138 ctagcgtgacttaagtcaagtaacgtgacttaagttgcgtttcatattgcactagcgtgacttaagtcacgctacctgtcttaagtcacgtt 943229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 343 - 422
Target Start/End: Complemental strand, 11573712 - 11573633
Alignment:
Q  343 acgcatgttaacatacgtaggggtattttggttatttactttgagaatgagcgaattcatttgggtaatgagcagaattc 422  Q
    ||||| ||||||||||||||||| ||||| |   ||||||||| ||||||||||  |  |||||||||||||||||||||    
T  11573712 acgcaagttaacatacgtaggggcatttttgacttttactttgggaatgagcgatattgtttgggtaatgagcagaattc 11573633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 343 - 422
Target Start/End: Complemental strand, 18387320 - 18387241
Alignment:
Q  343 acgcatgttaacatacgtaggggtattttggttatttactttgagaatgagcgaattcatttgggtaatgagcagaattc 422  Q
    |||||||||||||| |||| ||| ||||| | ||||||||||| ||||||||  |  |||||| ||||||||||||||||    
T  18387320 acgcatgttaacatgcgtaagggcatttttgatatttactttgggaatgagcagaaccatttgagtaatgagcagaattc 18387241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 367 - 422
Target Start/End: Original strand, 25389873 - 25389928
Alignment:
Q  367 attttggttatttactttgagaatgagcgaattcatttgggtaatgagcagaattc 422  Q
    |||||||| ||||||||||||||||||| ||| |||||| |||| |||||||||||    
T  25389873 attttggtcatttactttgagaatgagcaaatccatttgagtaaagagcagaattc 25389928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 377 - 422
Target Start/End: Complemental strand, 20685051 - 20685006
Alignment:
Q  377 tttactttgagaatgagcgaattcatttgggtaatgagcagaattc 422  Q
    ||||||||||||||||||| |  |||||||||||||||||||||||    
T  20685051 tttactttgagaatgagcggaaccatttgggtaatgagcagaattc 20685006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 349 - 422
Target Start/End: Original strand, 37893013 - 37893086
Alignment:
Q  349 gttaacatacgtaggggtattttggttatttactttgagaatgagcgaattcatttgggtaatgagcagaattc 422  Q
    |||||||| | |||||| |||||||   ||||||||| |||||||||||  |||||||||||| ||||||||||    
T  37893013 gttaacatgcataggggcattttggacttttactttgggaatgagcgaaaccatttgggtaattagcagaattc 37893086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 22 - 101
Target Start/End: Original strand, 24928982 - 24929059
Alignment:
Q  22 accaaaattattattgaatgattgcatattcactaaacagtaacaaatggaacaaggcagcagcagctactgccactgcc 101  Q
    ||||||||||||||||||| ||||||| ||||||||||||  |   | ||||||| |  |||||||||||||||||||||    
T  24928982 accaaaattattattgaataattgcatgttcactaaacagggaatgaaggaacaaag--gcagcagctactgccactgcc 24929059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 61
Target Start/End: Original strand, 25678596 - 25678635
Alignment:
Q  22 accaaaattattattgaatgattgcatattcactaaacag 61  Q
    ||||||||||||||||||| ||||||| ||||||||||||    
T  25678596 accaaaattattattgaataattgcatgttcactaaacag 25678635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 248 - 306
Target Start/End: Original strand, 24929186 - 24929244
Alignment:
Q  248 ttaagtcactcaacgtgacttaagttgcgttacattttgtactaacgtgagttaagtca 306  Q
    ||||||||  |||||||||||||||||||||  |||||| |||| ||||| ||||||||    
T  24929186 ttaagtcaagcaacgtgacttaagttgcgtttaattttgcactagcgtgacttaagtca 24929244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 135 - 181
Target Start/End: Original strand, 25678695 - 25678741
Alignment:
Q  135 agcaccaacgcgagttaactcacactagtgttaaaactagcgtgact 181  Q
    ||||||| || |||||||||||| || ||||||||||||||||||||    
T  25678695 agcaccagcgtgagttaactcacgctcgtgttaaaactagcgtgact 25678741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 338 - 423
Target Start/End: Complemental strand, 2154346 - 2154261
Alignment:
Q  338 cactaacgcatgttaacatacgtaggggtattttggttatttactttgagaatgagcgaattcatttgggtaatgagcagaattcc 423  Q
    |||||| |||||||||  | |||||||  |||||| |  ||||||||| ||||||||||  |  ||||||||||||||||||||||    
T  2154346 cactaatgcatgttaagttgcgtagggacattttgatcttttactttgggaatgagcgatattgtttgggtaatgagcagaattcc 2154261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 9e-29; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 298 - 419
Target Start/End: Original strand, 5126 - 5247
Alignment:
Q  298 gttaagtcacgcaacatatgttaagtcacgttgtaatatgcactaacgcatgttaacatacgtaggggtattttggttatttactttgagaatgagcgaa 397  Q
    ||||||||||||  | ||| |||||| ||||| |||| ||||||| ||||||||||||| |||||||| |||| ||| |||||||||| |||||||||||    
T  5126 gttaagtcacgctgcttatcttaagttacgttataatttgcactagcgcatgttaacatgcgtaggggcatttcggtcatttactttgggaatgagcgaa 5225  T
Q  398 ttcatttgggtaatgagcagaa 419  Q
    | ||||||||||||||||||||    
T  5226 tccatttgggtaatgagcagaa 5247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 306 - 423
Target Start/End: Original strand, 19365357 - 19365474
Alignment:
Q  306 acgcaacatatgttaagtcacgttgtaatatgcactaacgcatgttaacatacgtaggggtattttggttatttactttgagaatgagcgaattcatttg 405  Q
    ||||||||||| |||| | ||||| |||| ||||||| |||||||||| || ||||||||||||| ||| ||||  |||| |||||||||||| |||||     
T  19365357 acgcaacatatcttaaattacgttctaatttgcactagcgcatgttaaaatgcgtaggggtatttcggtcattttatttgggaatgagcgaatccattta 19365456  T
Q  406 ggtaatgagcagaattcc 423  Q
    ||||||||||||||||||    
T  19365457 ggtaatgagcagaattcc 19365474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 301 - 418
Target Start/End: Complemental strand, 38386295 - 38386178
Alignment:
Q  301 aagtcacgcaacatatgttaagtcacgttgtaatatgcactaacgcatgttaacatacgtaggggtattttggttatttactttgagaatgagcgaattc 400  Q
    ||||||||| || ||| |||||| ||||| |||| ||||||| ||||||||||||| |||||||| ||||   | ||||||||||  ||||||||||| |    
T  38386295 aagtcacgctacttatcttaagttacgttataatttgcactagcgcatgttaacatgcgtaggggcatttcaatcatttactttggaaatgagcgaatcc 38386196  T
Q  401 atttgggtaatgagcaga 418  Q
    |||||| |||||||||||    
T  38386195 atttggataatgagcaga 38386178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 286 - 422
Target Start/End: Original strand, 5061671 - 5061806
Alignment:
Q  286 gtactaacgtgagttaagtcacgcaacatatgttaagtcacgttgtaatatgcactaacgcatgttaacatacgtaggggtattttggttatttactttg 385  Q
    |||||| ||||||||||||||||| | ||||||||||| |||||||||| |||| || | ||||||||||| ||||  |  |||| | | ||||| ||||    
T  5061671 gtactagcgtgagttaagtcacgcga-atatgttaagttacgttgtaatttgcattagcacatgttaacatgcgtaacgacatttcgttcatttattttg 5061769  T
Q  386 agaatgagcgaattcatttgggtaatgagcagaattc 422  Q
      |||||| |||| |||||||||||||||||||||||    
T  5061770 gaaatgagtgaatccatttgggtaatgagcagaattc 5061806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 6 - 61
Target Start/End: Complemental strand, 41798961 - 41798906
Alignment:
Q  6 atcaatgaatggttgtaccaaaattattattgaatgattgcatattcactaaacag 61  Q
    ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||    
T  41798961 atcaatgaatggttgtaccaaaattattattgaataattgcatgttcactaaacag 41798906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 6 - 61
Target Start/End: Complemental strand, 44552473 - 44552418
Alignment:
Q  6 atcaatgaatggttgtaccaaaattattattgaatgattgcatattcactaaacag 61  Q
    ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||    
T  44552473 atcaatgaatggttgtaccaaaattattattgaataattgcatgttcactaaacag 44552418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 259 - 422
Target Start/End: Complemental strand, 44552189 - 44552026
Alignment:
Q  259 aacgtgacttaagttgcgttacattttgtactaacgtgagttaagtcacgcaacatatgttaagtcacgttgtaatatgcactaacgcatgttaacatac 358  Q
    |||||||||||||||||||| ||| ||| | || ||||| ||||||||||| || | | ||||||||||||  ||| ||||||| ||||||||||  | |    
T  44552189 aacgtgacttaagttgcgtttcatattgcattagcgtgacttaagtcacgctacctgtcttaagtcacgtttcaatttgcactagcgcatgttaagttgc 44552090  T
Q  359 gtaggggtattttggttatttactttgagaatgagcgaattcatttgggtaatgagcagaattc 422  Q
    ||| || ||    |||  |||| ||| ||||||||||||  ||||||| |||||||||||||||    
T  44552089 gtaaggataaaaaggtcttttattttaagaatgagcgaaaccatttggataatgagcagaattc 44552026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 361 - 422
Target Start/End: Complemental strand, 28138820 - 28138759
Alignment:
Q  361 aggggtattttggttatttactttgagaatgagcgaattcatttgggtaatgagcagaattc 422  Q
    |||||||||||||| |||||||||| |||||||| || |||||||||||| |||||||||||    
T  28138820 aggggtattttggtcatttactttgggaatgagcaaaatcatttgggtaaagagcagaattc 28138759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 345 - 422
Target Start/End: Complemental strand, 38790962 - 38790884
Alignment:
Q  345 gcatgttaacatacgtaggggtattttggttatttacttt-gagaatgagcgaattcatttgggtaatgagcagaattc 422  Q
    |||||||||||| ||||||||||||||||   |||||||| || ||||||||||  ||||||| |||||||||||||||    
T  38790962 gcatgttaacatgcgtaggggtattttggacttttactttggaaaatgagcgaaaccatttggataatgagcagaattc 38790884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 349 - 422
Target Start/End: Complemental strand, 26009442 - 26009369
Alignment:
Q  349 gttaacatacgtaggggtattttggttatttactttgagaatgagcgaattcatttgggtaatgagcagaattc 422  Q
    |||||||| ||||||  ||||||||| |||||||||| |||||||| || || ||||||||| |||||||||||    
T  26009442 gttaacatgcgtaggaatattttggtcatttactttgggaatgagcaaaatcgtttgggtaaagagcagaattc 26009369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 342 - 422
Target Start/End: Complemental strand, 31823669 - 31823589
Alignment:
Q  342 aacgcatgttaacatacgtaggggtattttggttatttactttgagaatgagcgaattcatttgggtaatgagcagaattc 422  Q
    |||||||||||||||  | ||||| ||||||| |||||| |||| ||||||||||  |  |||||||||||||||||||||    
T  31823669 aacgcatgttaacatgtgcaggggcattttggatatttattttgggaatgagcgatattgtttgggtaatgagcagaattc 31823589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 376 - 422
Target Start/End: Original strand, 33839474 - 33839520
Alignment:
Q  376 atttactttgagaatgagcgaattcatttgggtaatgagcagaattc 422  Q
    ||||||||||||||||||||||| ||||||| ||| |||||||||||    
T  33839474 atttactttgagaatgagcgaatccatttggataaagagcagaattc 33839520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 184
Target Start/End: Complemental strand, 41798829 - 41798791
Alignment:
Q  146 gagttaactcacactagtgttaaaactagcgtgacttaa 184  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  41798829 gagttaactcacgctagtgttaaaactagcgtgacttaa 41798791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 349 - 422
Target Start/End: Original strand, 26011958 - 26012031
Alignment:
Q  349 gttaacatacgtaggggtattttggttatttactttgagaatgagcgaattcatttgggtaatgagcagaattc 422  Q
    |||||||| | ||| ||||||||||| |||||||||||||||||   || || ||||||||| |||||||||||    
T  26011958 gttaacatgcatagaggtattttggtcatttactttgagaatgattaaaatcgtttgggtaaagagcagaattc 26012031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 188
Target Start/End: Complemental strand, 44552362 - 44552309
Alignment:
Q  135 agcaccaacgcgagttaactcacactagtgttaaaactagcgtgacttaactca 188  Q
    ||||||| || |||||||||||| || ||||||||||||| |||||||||||||    
T  44552362 agcaccatcgtgagttaactcacgctcgtgttaaaactagtgtgacttaactca 44552309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 338 - 422
Target Start/End: Original strand, 1537240 - 1537324
Alignment:
Q  338 cactaacgcatgttaacatacgtaggggtattttggttatttactttgagaatgagcgaattcatttgggtaatgagcagaattc 422  Q
    ||||| ||||||||||||| || ||||| ||||||   ||||||||||||||||| |||     |||||||||||||||||||||    
T  1537240 cactagcgcatgttaacatgcgcaggggcattttgaacatttactttgagaatgaacgatactgtttgggtaatgagcagaattc 1537324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 343 - 423
Target Start/End: Original strand, 44552701 - 44552781
Alignment:
Q  343 acgcatgttaacatacgtaggggtattttggttatttactttgagaatgagcgaattcatttgggtaatgagcagaattcc 423  Q
    ||||| |||||||| |||||| | ||||| |   ||||||||||||||||||||  |  ||||||||||||||||||||||    
T  44552701 acgcaagttaacatgcgtaggagcattttcgacttttactttgagaatgagcgatattgtttgggtaatgagcagaattcc 44552781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 361 - 422
Target Start/End: Original strand, 28139452 - 28139513
Alignment:
Q  361 aggggtattttggttatttactttgagaatgagcgaattcatttgggtaatgagcagaattc 422  Q
    ||||| |||||||| |||||||||| ||||| || ||| |||||||||||  ||||||||||    
T  28139452 aggggcattttggtcatttactttgggaatgggcaaatccatttgggtaaaaagcagaattc 28139513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 298 - 419
Target Start/End: Complemental strand, 38047770 - 38047649
Alignment:
Q  298 gttaagtcacgcaacatatgttaagtcacgttgtaatatgcactaacgcatgttaacatacgtaggggtattttggttatttactttgagaatgagcgaa 397  Q
    |||||||||||| || ||| |||||| ||||| |||| || |||| ||||||||||||| ||||| |  |||||| | ||||| ||| | ||| ||||||    
T  38047770 gttaagtcacgctacttatcttaagttacgttataatttgtactagcgcatgttaacatgcgtagagacattttgatcatttattttaaaaataagcgaa 38047671  T
Q  398 ttcatttgggtaatgagcagaa 419  Q
    |  |||| | |||| |||||||    
T  38047670 tctatttagataataagcagaa 38047649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 3e-28; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 298 - 422
Target Start/End: Original strand, 5967191 - 5967315
Alignment:
Q  298 gttaagtcacgcaacatatgttaagtcacgttgtaatatgcactaacgcatgttaacatacgtaggggtattttggttatttactttgagaatgagcgaa 397  Q
    |||||||||| | || ||| |||||| ||||| |||| ||||||| ||||||||||||| |||||||| |||| | | |||||||||| |||||||||||    
T  5967191 gttaagtcacactacttatcttaagttacgttataatttgcactagcgcatgttaacatgcgtaggggcatttcgatcatttactttgggaatgagcgaa 5967290  T
Q  398 ttcatttgggtaatgagcagaattc 422  Q
    | |||||||||||||||||||||||    
T  5967291 tccatttgggtaatgagcagaattc 5967315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 206 - 422
Target Start/End: Complemental strand, 9418803 - 9418587
Alignment:
Q  206 gttttggtgcttgctttgtacctgttttatgcctagcgtggtttaagtcactcaacgtgacttaagttgcgttacattttgtactaacgtgagttaagtc 305  Q
    |||||||||| ||||||||||| | ||||   | ||||||  ||||||||   ||| |||||||||||||||  ||||||| |||| ||||| |||||||    
T  9418803 gttttggtgcatgctttgtaccagatttagaaccagcgtgacttaagtcaagtaacatgacttaagttgcgtgtcattttgcactagcgtgacttaagtc 9418704  T
Q  306 acgcaacatatgttaagtcacgttgtaatatgcactaacgcatgttaacatacgtaggggtattttggttatttactttgagaatgagcgaattcatttg 405  Q
    |||| || | | ||||||||||||  ||| ||||||  ||||||||||  | |||| |||||   ||||  ||||||||| |||||||||||  ||||||    
T  9418703 acgctacctgtcttaagtcacgttccaatttgcacttgcgcatgttaagttgcgtaagggtaaaatggtcttttactttgggaatgagcgaaaccatttg 9418604  T
Q  406 ggtaatgagcagaattc 422  Q
    |||||||||||||||||    
T  9418603 ggtaatgagcagaattc 9418587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 298 - 422
Target Start/End: Original strand, 34279515 - 34279639
Alignment:
Q  298 gttaagtcacgcaacatatgttaagtcacgttgtaatatgcactaacgcatgttaacatacgtaggggtattttggttatttactttgagaatgagcgaa 397  Q
    |||||||||||| || ||| |||||| ||||| |||| |||||||||||||||||||||  ||||||| |||| | | |||||||||  |||||||||||    
T  34279515 gttaagtcacgctacttatcttaagttacgttataatttgcactaacgcatgttaacatgtgtaggggcatttcgatcatttactttaggaatgagcgaa 34279614  T
Q  398 ttcatttgggtaatgagcagaattc 422  Q
    | |||||  ||||||||||||||||    
T  34279615 tccatttaagtaatgagcagaattc 34279639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 6 - 188
Target Start/End: Original strand, 9387545 - 9387725
Alignment:
Q  6 atcaatgaatggttgtaccaaaattattattgaatgattgcatattcactaaacagtaacaaatggaacaaggcagcagcagctactgccactgccactg 105  Q
    |||||| |||||||||||||||||||||||||||| ||||||| |||||||||||| ||   | ||||||| |  |||||| ||||||||||||||| ||    
T  9387545 atcaattaatggttgtaccaaaattattattgaataattgcatgttcactaaacaggaaatgaaggaacaaag--gcagcaactactgccactgccattg 9387642  T
Q  106 tcacgtaagtctgctgcgcatataacatcagcaccaacgcgagttaactcacactagtgttaaaactagcgtgacttaactca 188  Q
     ||     |||| | |||   |||  |  ||||||| || |||||||||||  |||||||||| |||||||||||||||||||    
T  9387643 ccagtctggtctacagcgtgcatagtagaagcaccagcgtgagttaactcatgctagtgttaagactagcgtgacttaactca 9387725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 331 - 422
Target Start/End: Complemental strand, 31762332 - 31762241
Alignment:
Q  331 taatatgcactaacgcatgttaacatacgtaggggtattttggttatttactttgagaatgagcgaattcatttgggtaatgagcagaattc 422  Q
    |||| |||||||  |||||||||||| | ||||| ||||| | |||||||||||| |||||||||||| ||||||  |||||||||||||||    
T  31762332 taatttgcactagtgcatgttaacatgcatagggatatttcgtttatttactttgggaatgagcgaatccatttgaataatgagcagaattc 31762241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 339 - 422
Target Start/End: Original strand, 33220782 - 33220865
Alignment:
Q  339 actaacgcatgttaacatacgtaggggtattttggttatttactttgagaatgagcgaattcatttgggtaatgagcagaattc 422  Q
    |||||||||||||||||| |||||||| ||||||    ||||||||| ||||||| |||  |||||||||||||||||||||||    
T  33220782 actaacgcatgttaacatgcgtaggggcattttgaacttttactttgggaatgagtgaaaccatttgggtaatgagcagaattc 33220865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 238 - 353
Target Start/End: Original strand, 9387824 - 9387939
Alignment:
Q  238 ctagcgtggtttaagtcactcaacgtgacttaagttgcgttacattttgtactaacgtgagttaagtcacgcaacatatgttaagtcacgttgtaatatg 337  Q
    ||||||||  ||||||||   ||||||||||||||||| || ||| ||| |||| ||||| |||||||| || || | | ||||||||||||  ||| ||    
T  9387824 ctagcgtgacttaagtcaagtaacgtgacttaagttgcatttcatattgcactagcgtgacttaagtcatgctacctgtcttaagtcacgttccaatttg 9387923  T
Q  338 cactaacgcatgttaa 353  Q
    ||||||||||||||||    
T  9387924 cactaacgcatgttaa 9387939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 361 - 422
Target Start/End: Original strand, 3588562 - 3588623
Alignment:
Q  361 aggggtattttggttatttactttgagaatgagcgaattcatttgggtaatgagcagaattc 422  Q
    ||||| |||||||| ||||| |||| |||||||| ||||||||||||||| ||| |||||||    
T  3588562 aggggcattttggtcatttaatttgggaatgagcaaattcatttgggtaaagagtagaattc 3588623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 349 - 422
Target Start/End: Original strand, 43640978 - 43641051
Alignment:
Q  349 gttaacatacgtaggggtattttggttatttactttgagaatgagcgaattcatttgggtaatgagcagaattc 422  Q
    |||||||| |||||||| | |||| | ||||||||||  ||||||| ||  |||||||||||||||||||||||    
T  43640978 gttaacatgcgtaggggcaatttgatcatttactttggaaatgagccaaaccatttgggtaatgagcagaattc 43641051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 238 - 306
Target Start/End: Original strand, 9387773 - 9387841
Alignment:
Q  238 ctagcgtggtttaagtcactcaacgtgacttaagttgcgttacattttgtactaacgtgagttaagtca 306  Q
    ||||||||  ||||||||  |||||||||||||||||||||  |||||| |||| ||||| ||||||||    
T  9387773 ctagcgtgacttaagtcaagcaacgtgacttaagttgcgtttaattttgcactagcgtgacttaagtca 9387841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 360 - 422
Target Start/End: Complemental strand, 3588402 - 3588340
Alignment:
Q  360 taggggtattttggttatttactttgagaatgagcgaattcatttgggtaatgagcagaattc 422  Q
    ||||| ||||||||| ||||||||||||||||| | ||| || |||| ||| |||||||||||    
T  3588402 tagggttattttggtcatttactttgagaatgatcaaatccaattggataaagagcagaattc 3588340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 6 - 60
Target Start/End: Complemental strand, 23883 - 23829
Alignment:
Q  6 atcaatgaatggttgtaccaaaattattattgaatgattgcatattcactaaaca 60  Q
    ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  23883 atcaatgaatggttgtaccaaaattattattgaataattgcatgttcactaaaca 23829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 135 - 422
Target Start/End: Complemental strand, 23772 - 23487
Alignment:
Q  135 agcaccaacgcgagttaactcacactagtgttaaaactagcgtgacttaactcagacgctagtaaaattctgttttggtgcttgctttgtacctgtttta 234  Q
    ||||||| || |||||||||||  || ||||||||||||||||||||||||||  |||||| | |       ||||||||| ||||||||||| |    |    
T  23772 agcaccagcgtgagttaactcaagctcgtgttaaaactagcgtgacttaactc--acgctactcattgaagtttttggtgcatgctttgtaccagagaca 23675  T
Q  235 tgcctagcgtggtttaagtcactcaacgtgacttaagttgcgttacattttgtactaacgtgagttaagtcacgcaacatatgttaagtcacgttgtaat 334  Q
       ||||||||  ||||||||   ||||||||||||||||| ||  |||||| |||| ||||| |||||| |||| || | | ||||||||||||  |||    
T  23674 gaactagcgtgacttaagtcaaataacgtgacttaagttgcatttaattttgcactagcgtgacttaagtgacgctacctgtcttaagtcacgttccaat 23575  T
Q  335 atgcactaacgcatgttaacatacgtaggggtattttggttatttactttgagaatgagcgaattcatttgggtaatgagcagaattc 422  Q
     ||||||| ||||||||||  |  ||| |||||    |||  |||||||||||||||||| ||  ||||||  |||||||||||||||    
T  23574 ttgcactagcgcatgttaagttgtgtaagggtaaaaaggtcttttactttgagaatgagcaaaaccatttgaataatgagcagaattc 23487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 46; Significance: 7e-17; HSPs: 3)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 6 - 102
Target Start/End: Original strand, 2493 - 2587
Alignment:
Q  6 atcaatgaatggttgtaccaaaattattattgaatgattgcatattcactaaacagtaacaaatggaacaaggcagcagcagctactgccactgcca 102  Q
    ||||||||||||||||||||||||||||||||||| ||||||| || |||||||||  |   | ||||||| |  ||||||||||||||||||||||    
T  2493 atcaatgaatggttgtaccaaaattattattgaataattgcatgtttactaaacagggaatgaaggaacaaag--gcagcagctactgccactgcca 2587  T

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Target: scaffold0246; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 238 - 422
Target Start/End: Original strand, 2747 - 2931
Alignment:
Q  238 ctagcgtggtttaagtcactcaacgtgacttaagttgcgttacattttgtactaacgtgagttaagtcacgcaacatatgttaagtcacgttgtaatatg 337  Q
    ||||||||  ||||||||   |||||| ||||||||||||| | | ||| |||| ||||| |||||||| || || | | ||||||||  ||  ||| ||    
T  2747 ctagcgtgacttaagtcaagtaacgtggcttaagttgcgtttcttattgcactagcgtgacttaagtcatgctacctgtcttaagtcattttccaatttg 2846  T
Q  338 cactaacgcatgttaacatacgtaggggtattttggttatttactttgagaatgagcgaattcatttgggtaatgagcagaattc 422  Q
    ||||| ||||||||||  | | || |||||    |||  |||| ||||||||||||||||  |||||||||||||||||||||||    
T  2847 cactagcgcatgttaagttgcataagggtaaaaaggtcttttattttgagaatgagcgaaaccatttgggtaatgagcagaattc 2931  T

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Target: scaffold0246; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 146 - 188
Target Start/End: Original strand, 2625 - 2667
Alignment:
Q  146 gagttaactcacactagtgttaaaactagcgtgacttaactca 188  Q
    |||||||||||| || ||||||||||||| |||||||||||||    
T  2625 gagttaactcacgctcgtgttaaaactagtgtgacttaactca 2667  T

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Target: scaffold1063 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold1063
Description:

Target: scaffold1063; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 341 - 422
Target Start/End: Complemental strand, 1556 - 1475
Alignment:
Q  341 taacgcatgttaacatacgtaggggtattttggttatttactttgagaatgagcgaattcatttgggtaatgagcagaattc 422  Q
    |||||||||||||||| || ||||| |||||||   |||||||| | |||||||| |  |||||||||||||||||||||||    
T  1556 taacgcatgttaacatgcgcaggggcattttggacttttactttaaaaatgagcggaaccatttgggtaatgagcagaattc 1475  T

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